GCF_001516895.1_ASM151689v1_genomic - 8 region(s)

Identified primary metabolite regions

NZ_LDYG01000003 (original name was: NZ_LDYG01000003.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 3.1	Pyruvate2acetate-formate	SCFA	31,703	54,681	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

NZ_LDYG01000010 (original name was: NZ_LDYG01000010.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 10.1	histidine2glutamate_hutHGIU_operon	Other	1	23,797	Histidine to glutamate K. pneumoniae	GLU	60%

NZ_LDYG01000017 (original name was: NZ_LDYG01000017.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 17.1	fatty_acids-unassigned	Putative	16,599	45,016	Acetate to butyrate C. sporogenes	BUT	33%

NZ_LDYG01000030 (original name was: NZ_LDYG01000030.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 30.1	succinate2propionate	SCFA	13,860	53,793	Succinate to propionate V. parvulla	PRO	50%

NZ_LDYG01000032 (original name was: NZ_LDYG01000032.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 32.1	Fumarate2succinate	SCFA	119,868	142,395

NZ_LDYG01000042 (original name was: NZ_LDYG01000042.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 42.1	fatty_acids-unassigned	Putative	2,570	28,051	Acetate to butyrate C. sporogenes	BUT	33%

NZ_LDYG01000054 (original name was: NZ_LDYG01000054.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 54.1	acetate2butyrate	SCFA	1	13,930	Acetate to butyrate C. sporogenes	BUT	50%

NZ_LDYG01000055 (original name was: NZ_LDYG01000055.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 55.1	Putrescine2spermidine	Aliphatic_amine	1	14,672	Arginine2putrescine R. gnavus	PUTR	40%

No primary metabolite regions were found in these records:: NZ_LDYG01000001 (original name was: NZ_LDYG01000001.1); NZ_LDYG01000002 (original name was: NZ_LDYG01000002.1); NZ_LDYG01000004 (original name was: NZ_LDYG01000004.1); NZ_LDYG01000005 (original name was: NZ_LDYG01000005.1); NZ_LDYG01000006 (original name was: NZ_LDYG01000006.1); NZ_LDYG01000007 (original name was: NZ_LDYG01000007.1); NZ_LDYG01000008 (original name was: NZ_LDYG01000008.1); NZ_LDYG01000009 (original name was: NZ_LDYG01000009.1); NZ_LDYG01000011 (original name was: NZ_LDYG01000011.1); NZ_LDYG01000012 (original name was: NZ_LDYG01000012.1); NZ_LDYG01000013 (original name was: NZ_LDYG01000013.1); NZ_LDYG01000014 (original name was: NZ_LDYG01000014.1); NZ_LDYG01000015 (original name was: NZ_LDYG01000015.1); NZ_LDYG01000016 (original name was: NZ_LDYG01000016.1); NZ_LDYG01000018 (original name was: NZ_LDYG01000018.1); NZ_LDYG01000019 (original name was: NZ_LDYG01000019.1); NZ_LDYG01000020 (original name was: NZ_LDYG01000020.1); NZ_LDYG01000021 (original name was: NZ_LDYG01000021.1); NZ_LDYG01000022 (original name was: NZ_LDYG01000022.1); NZ_LDYG01000023 (original name was: NZ_LDYG01000023.1); NZ_LDYG01000024 (original name was: NZ_LDYG01000024.1); NZ_LDYG01000025 (original name was: NZ_LDYG01000025.1); NZ_LDYG01000026 (original name was: NZ_LDYG01000026.1); NZ_LDYG01000027 (original name was: NZ_LDYG01000027.1); NZ_LDYG01000028 (original name was: NZ_LDYG01000028.1); NZ_LDYG01000029 (original name was: NZ_LDYG01000029.1); NZ_LDYG01000031 (original name was: NZ_LDYG01000031.1); NZ_LDYG01000033 (original name was: NZ_LDYG01000033.1); NZ_LDYG01000034 (original name was: NZ_LDYG01000034.1); NZ_LDYG01000035 (original name was: NZ_LDYG01000035.1); NZ_LDYG01000036 (original name was: NZ_LDYG01000036.1); NZ_LDYG01000037 (original name was: NZ_LDYG01000037.1); NZ_LDYG01000038 (original name was: NZ_LDYG01000038.1); NZ_LDYG01000039 (original name was: NZ_LDYG01000039.1); NZ_LDYG01000040 (original name was: NZ_LDYG01000040.1); NZ_LDYG01000041 (original name was: NZ_LDYG01000041.1); NZ_LDYG01000043 (original name was: NZ_LDYG01000043.1); NZ_LDYG01000044 (original name was: NZ_LDYG01000044.1); NZ_LDYG01000045 (original name was: NZ_LDYG01000045.1); NZ_LDYG01000046 (original name was: NZ_LDYG01000046.1); NZ_LDYG01000047 (original name was: NZ_LDYG01000047.1); NZ_LDYG01000048 (original name was: NZ_LDYG01000048.1); NZ_LDYG01000049 (original name was: NZ_LDYG01000049.1); NZ_LDYG01000050 (original name was: NZ_LDYG01000050.1); NZ_LDYG01000051 (original name was: NZ_LDYG01000051.1); NZ_LDYG01000052 (original name was: NZ_LDYG01000052.1); NZ_LDYG01000053 (original name was: NZ_LDYG01000053.1); NZ_LDYG01000056 (original name was: NZ_LDYG01000056.1); NZ_LDYG01000057 (original name was: NZ_LDYG01000057.1); NZ_LDYG01000058 (original name was: NZ_LDYG01000058.1); NZ_LDYG01000059 (original name was: NZ_LDYG01000059.1)

Compact view

c00003_NZ_LDYG.. - Region 1 - Pyruvate2acetate-formate

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Location: 31,703 - 54,681 nt. (total: 22,979 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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c00010_NZ_LDYG.. - Region 1 - histidine2glutamate_hutHGIU_operon

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Location: 1 - 23,797 nt. (total: 23,797 nt) Show pHMM detection rules used

Region on contig edge.

histidine2glutamate_hutHGIU_operon: (minimum(3, [Amidohydro_1, Amidohydro_3, Arginase, FGase, Urocanase]) and Lyase_aromatic and Urocanase_C)

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c00017_NZ_LDYG.. - Region 1 - fatty_acids-unassigned

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Location: 16,599 - 45,016 nt. (total: 28,418 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

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c00030_NZ_LDYG.. - Region 1 - succinate2propionate

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Location: 13,860 - 53,793 nt. (total: 39,934 nt) Show pHMM detection rules used

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

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c00032_NZ_LDYG.. - Region 1 - Fumarate2succinate

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Location: 119,868 - 142,395 nt. (total: 22,528 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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No matches found.

c00042_NZ_LDYG.. - Region 1 - fatty_acids-unassigned

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Location: 2,570 - 28,051 nt. (total: 25,482 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

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c00054_NZ_LDYG.. - Region 1 - acetate2butyrate

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Location: 1 - 13,930 nt. (total: 13,930 nt) Show pHMM detection rules used

Region on contig edge.

acetate2butyrate: (not (POR or POR_N or PFOR_II) and minimum(4, [Acyl-CoA_dh_1, Acyl-CoA_dh_2, ECH_2, ETF, ETF_alpha, HCDH_N, Thiolase_N, ketoacyl-synt]) and HCDH and minimum(1, [EC1_2-faecali, ECH1_Enoyl_CoA_DH1, ECH1_Enoyl_CoA_DH2, ECH1_Enoyl_CoA_DH3, ECH1_Enoyl_CoA_DH4, Thiolase_C]))

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c00055_NZ_LDYG.. - Region 1 - Putrescine2spermidine

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Location: 1 - 14,672 nt. (total: 14,672 nt) Show pHMM detection rules used

Region on contig edge.

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

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core biosynthetic genes

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