GCF_000468015.1_ASM46801v1_genomic - 6 region(s)

Identified primary metabolite regions

NZ_KI260286.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 2.1	TPP_AA_metabolism	Putative	35,411	68,340

NZ_KI260291.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 6.1	Pyruvate2acetate-formate	SCFA	1	17,983	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

NZ_KI260308.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 23.1	Others_HGD_unassigned	Putative	1	7,895

NZ_KI260314.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 29.1	porA	SCFA	1	19,821	porA C. sporogenes	POR	60%

NZ_KI260397.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 96.1	Rnf_complex	E-MGC	1	15,255	Rnf complex C. sporogenes	RNF	66%

NZ_KI260408.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 106.1	Putrescine2spermidine	Aliphatic_amine	151,524	178,162	Arginine2putrescine R. gnavus	PUTR	80%

Region	Type	Class	From	To	Most similar known cluster	Similarity
Region 2.1	TPP_AA_metabolism	Putative	35,411	68,340
Region 6.1	Pyruvate2acetate-formate	SCFA	1	17,983	Pyruvate to acetate-formate E. coli	PFL_acetate	100%
Region 23.1	Others_HGD_unassigned	Putative	1	7,895
Region 29.1	porA	SCFA	1	19,821	porA C. sporogenes	POR	60%
Region 96.1	Rnf_complex	E-MGC	1	15,255	Rnf complex C. sporogenes	RNF	66%
Region 106.1	Putrescine2spermidine	Aliphatic_amine	151,524	178,162	Arginine2putrescine R. gnavus	PUTR	80%

No primary metabolite regions were found in these records:: NZ_KI260285.1; NZ_KI260288.1; NZ_KI260289.1; NZ_KI260290.1; NZ_KI260292.1; NZ_KI260293.1; NZ_KI260294.1; NZ_KI260295.1; NZ_KI260296.1; NZ_KI260297.1; NZ_KI260298.1; NZ_KI260299.1; NZ_KI260300.1; NZ_KI260301.1; NZ_KI260302.1; NZ_KI260303.1; NZ_KI260304.1; NZ_KI260305.1; NZ_KI260306.1; NZ_KI260307.1; NZ_KI260309.1; NZ_KI260310.1; NZ_KI260311.1; NZ_KI260312.1; NZ_KI260313.1; NZ_KI260315.1; NZ_KI260316.1; NZ_KI260317.1; NZ_KI260318.1; NZ_KI260319.1; NZ_KI260321.1; NZ_KI260322.1; NZ_KI260323.1; NZ_KI260324.1; NZ_KI260325.1; NZ_KI260326.1; NZ_KI260328.1; NZ_KI260329.1; NZ_KI260330.1; NZ_KI260331.1; NZ_KI260332.1; NZ_KI260334.1; NZ_KI260335.1; NZ_KI260336.1; NZ_KI260337.1; NZ_KI260338.1; NZ_KI260339.1; NZ_KI260340.1; NZ_KI260341.1; NZ_KI260344.1; NZ_KI260345.1; NZ_KI260346.1; NZ_KI260347.1; NZ_KI260349.1; NZ_KI260351.1; NZ_KI260352.1; NZ_KI260353.1; NZ_KI260354.1; NZ_KI260355.1; NZ_KI260356.1; NZ_KI260358.1; NZ_KI260359.1; NZ_KI260360.1; NZ_KI260361.1; NZ_KI260362.1; NZ_KI260363.1; NZ_KI260365.1; NZ_KI260367.1; NZ_KI260369.1; NZ_KI260370.1; NZ_KI260371.1; NZ_KI260372.1; NZ_KI260373.1; NZ_KI260374.1; NZ_KI260375.1; NZ_KI260376.1; NZ_KI260377.1; NZ_KI260378.1; NZ_KI260379.1; NZ_KI260380.1; NZ_KI260381.1; NZ_KI260382.1; NZ_KI260385.1; NZ_KI260386.1; NZ_KI260387.1; NZ_KI260388.1; NZ_KI260389.1; NZ_KI260392.1; NZ_KI260393.1; NZ_KI260395.1; NZ_KI260396.1; NZ_KI260398.1; NZ_KI260400.1; NZ_KI260401.1; NZ_KI260402.1; NZ_KI260403.1; NZ_KI260404.1; NZ_KI260405.1; NZ_KI260406.1; NZ_KI260407.1; NZ_KI260409.1; NZ_KI260410.1; NZ_KI260411.1; NZ_KI260412.1; NZ_KI260413.1; NZ_KI260414.1; NZ_KI260415.1; NZ_KI260417.1; NZ_KI260418.1; NZ_KI260419.1; NZ_KI260420.1; NZ_KI260421.1; NZ_KI260422.1; NZ_KI260423.1; NZ_KI260424.1; NZ_KI260425.1; NZ_KI260426.1; NZ_KI260429.1; NZ_KI260431.1; NZ_KI260432.1; NZ_KI260433.1; NZ_KI260434.1; NZ_KI260435.1; NZ_KI260436.1; NZ_KI260437.1; NZ_KI260438.1; NZ_KI260439.1; NZ_KI260440.1; NZ_KI260441.1; NZ_KI260442.1; NZ_KI260443.1; NZ_KI260444.1; NZ_KI260445.1; NZ_KI260446.1; NZ_KI260447.1; NZ_KI260448.1; NZ_KI260449.1; NZ_KI260450.1; NZ_KI260451.1; NZ_KI260452.1; NZ_KI260453.1; NZ_KI260455.1; NZ_KI260457.1; NZ_KI260458.1; NZ_KI260459.1; NZ_KI260460.1; NZ_KI260462.1; NZ_KI260464.1; NZ_KI260465.1; NZ_KI260466.1; NZ_KI260467.1; NZ_KI260468.1; NZ_KI260469.1; NZ_KI260471.1; NZ_KI260472.1; NZ_KI260473.1; NZ_KI260474.1; NZ_KI260475.1; NZ_KI260476.1; NZ_KI260477.1; NZ_KI260478.1; NZ_KI260480.1; NZ_KI260481.1; NZ_KI260482.1; NZ_KI260483.1; NZ_KI260484.1; NZ_KI260485.1; NZ_KI260486.1; NZ_KI260487.1; NZ_KI260488.1; NZ_KI260489.1; NZ_KI260490.1; NZ_KI260492.1; NZ_KI260493.1; NZ_KI260494.1; NZ_KI260495.1; NZ_KI260496.1; NZ_KI260497.1; NZ_KI260498.1; NZ_KI260499.1; NZ_KI260500.1; NZ_KI260501.1; NZ_KI260502.1; NZ_KI260503.1; NZ_KI260504.1; NZ_KI260506.1; NZ_KI260507.1; NZ_KI260508.1; NZ_KI260509.1; NZ_KI260510.1

Compact view

NZ_KI260286.1 - Region 1 - TPP_AA_metabolism

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Location: 35,411 - 68,340 nt. (total: 32,930 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

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electron transport genes

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No matches found.

NZ_KI260291.1 - Region 1 - Pyruvate2acetate-formate

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Location: 1 - 17,983 nt. (total: 17,983 nt) Show pHMM detection rules used

Region on contig edge.

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

Legend:

core biosynthetic genes

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transport-related genes

regulatory genes

resistance genes

encapsulation genes

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NZ_KI260308.1 - Region 1 - Others_HGD_unassigned

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Location: 1 - 7,895 nt. (total: 7,895 nt) Show pHMM detection rules used

Region on contig edge.

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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KnownClusterBlast

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No matches found.

NZ_KI260314.1 - Region 1 - porA

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Location: 1 - 19,821 nt. (total: 19,821 nt) Show pHMM detection rules used

Region on contig edge.

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

Legend:

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NZ_KI260397.1 - Region 1 - Rnf_complex

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Location: 1 - 15,255 nt. (total: 15,255 nt) Show pHMM detection rules used

Region on contig edge.

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

Legend:

core biosynthetic genes

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regulatory genes

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NZ_KI260408.1 - Region 1 - Putrescine2spermidine

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Location: 151,524 - 178,162 nt. (total: 26,639 nt) Show pHMM detection rules used

Region on contig edge.

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

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