GCF_022179445.1_ASM2217944v1_genomic - 8 region(s)

Identified primary metabolite regions

NZ_BPQU01000002 (original name was: NZ_BPQU01000002.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 2.1	fatty_acids-unassigned,acetate2butyrate	SCFA	51,105	79,293
Region 2.2	Formate_dehydrogenase	E-MGC	82,105	107,159	Formate dehydrogenase E. coli	FORM	100%

NZ_BPQU01000003 (original name was: NZ_BPQU01000003.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 3.1	TPP_AA_metabolism	Putative	192,464	221,211

NZ_BPQU01000008 (original name was: NZ_BPQU01000008.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 8.1	Fumarate2succinate	SCFA	7,095	31,855

NZ_BPQU01000012 (original name was: NZ_BPQU01000012.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 12.1	Fumarate2succinate	SCFA	94,670	117,991	Fumarate2succinate suc dh E. coli	SUC	100%

NZ_BPQU01000022 (original name was: NZ_BPQU01000022.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 22.1	NADH_dehydrogenase_I	E-MGC	1	30,088	NADH dehydrogenase I Bacteroides sp.	NADHD	38%

NZ_BPQU01000026 (original name was: NZ_BPQU01000026.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 26.1	TPP_fatty_acids	Putative	6,187	33,013

NZ_BPQU01000028 (original name was: NZ_BPQU01000028.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 28.1	TPP_AA_metabolism	Putative	1	19,657

Region	Type	Class	From	To	Most similar known cluster	Similarity
Region 2.1	fatty_acids-unassigned,acetate2butyrate	SCFA	51,105	79,293
Region 2.2	Formate_dehydrogenase	E-MGC	82,105	107,159	Formate dehydrogenase E. coli	FORM	100%
Region 3.1	TPP_AA_metabolism	Putative	192,464	221,211
Region 8.1	Fumarate2succinate	SCFA	7,095	31,855
Region 12.1	Fumarate2succinate	SCFA	94,670	117,991	Fumarate2succinate suc dh E. coli	SUC	100%
Region 22.1	NADH_dehydrogenase_I	E-MGC	1	30,088	NADH dehydrogenase I Bacteroides sp.	NADHD	38%
Region 26.1	TPP_fatty_acids	Putative	6,187	33,013
Region 28.1	TPP_AA_metabolism	Putative	1	19,657

No primary metabolite regions were found in these records:: NZ_BPQU01000001 (original name was: NZ_BPQU01000001.1); NZ_BPQU01000004 (original name was: NZ_BPQU01000004.1); NZ_BPQU01000005 (original name was: NZ_BPQU01000005.1); NZ_BPQU01000006 (original name was: NZ_BPQU01000006.1); NZ_BPQU01000007 (original name was: NZ_BPQU01000007.1); NZ_BPQU01000009 (original name was: NZ_BPQU01000009.1); NZ_BPQU01000010 (original name was: NZ_BPQU01000010.1); NZ_BPQU01000011 (original name was: NZ_BPQU01000011.1); NZ_BPQU01000013 (original name was: NZ_BPQU01000013.1); NZ_BPQU01000014 (original name was: NZ_BPQU01000014.1); NZ_BPQU01000015 (original name was: NZ_BPQU01000015.1); NZ_BPQU01000016 (original name was: NZ_BPQU01000016.1); NZ_BPQU01000017 (original name was: NZ_BPQU01000017.1); NZ_BPQU01000018 (original name was: NZ_BPQU01000018.1); NZ_BPQU01000019 (original name was: NZ_BPQU01000019.1); NZ_BPQU01000020 (original name was: NZ_BPQU01000020.1); NZ_BPQU01000021 (original name was: NZ_BPQU01000021.1); NZ_BPQU01000023 (original name was: NZ_BPQU01000023.1); NZ_BPQU01000024 (original name was: NZ_BPQU01000024.1); NZ_BPQU01000025 (original name was: NZ_BPQU01000025.1); NZ_BPQU01000027 (original name was: NZ_BPQU01000027.1); NZ_BPQU01000029 (original name was: NZ_BPQU01000029.1); NZ_BPQU01000030 (original name was: NZ_BPQU01000030.1); NZ_BPQU01000031 (original name was: NZ_BPQU01000031.1); NZ_BPQU01000032 (original name was: NZ_BPQU01000032.1); NZ_BPQU01000033 (original name was: NZ_BPQU01000033.1); NZ_BPQU01000034 (original name was: NZ_BPQU01000034.1); NZ_BPQU01000035 (original name was: NZ_BPQU01000035.1); NZ_BPQU01000036 (original name was: NZ_BPQU01000036.1); NZ_BPQU01000037 (original name was: NZ_BPQU01000037.1); NZ_BPQU01000038 (original name was: NZ_BPQU01000038.1); NZ_BPQU01000039 (original name was: NZ_BPQU01000039.1); NZ_BPQU01000040 (original name was: NZ_BPQU01000040.1); NZ_BPQU01000041 (original name was: NZ_BPQU01000041.1); NZ_BPQU01000042 (original name was: NZ_BPQU01000042.1); NZ_BPQU01000043 (original name was: NZ_BPQU01000043.1); NZ_BPQU01000044 (original name was: NZ_BPQU01000044.1); NZ_BPQU01000045 (original name was: NZ_BPQU01000045.1); NZ_BPQU01000046 (original name was: NZ_BPQU01000046.1); NZ_BPQU01000047 (original name was: NZ_BPQU01000047.1); NZ_BPQU01000048 (original name was: NZ_BPQU01000048.1); NZ_BPQU01000049 (original name was: NZ_BPQU01000049.1); NZ_BPQU01000050 (original name was: NZ_BPQU01000050.1); NZ_BPQU01000051 (original name was: NZ_BPQU01000051.1); NZ_BPQU01000052 (original name was: NZ_BPQU01000052.1); NZ_BPQU01000053 (original name was: NZ_BPQU01000053.1); NZ_BPQU01000054 (original name was: NZ_BPQU01000054.1); NZ_BPQU01000055 (original name was: NZ_BPQU01000055.1); NZ_BPQU01000056 (original name was: NZ_BPQU01000056.1); NZ_BPQU01000057 (original name was: NZ_BPQU01000057.1); NZ_BPQU01000058 (original name was: NZ_BPQU01000058.1); NZ_BPQU01000059 (original name was: NZ_BPQU01000059.1); NZ_BPQU01000060 (original name was: NZ_BPQU01000060.1); NZ_BPQU01000061 (original name was: NZ_BPQU01000061.1); NZ_BPQU01000062 (original name was: NZ_BPQU01000062.1); NZ_BPQU01000063 (original name was: NZ_BPQU01000063.1); NZ_BPQU01000064 (original name was: NZ_BPQU01000064.1); NZ_BPQU01000065 (original name was: NZ_BPQU01000065.1); NZ_BPQU01000066 (original name was: NZ_BPQU01000066.1); NZ_BPQU01000067 (original name was: NZ_BPQU01000067.1); NZ_BPQU01000068 (original name was: NZ_BPQU01000068.1); NZ_BPQU01000069 (original name was: NZ_BPQU01000069.1); NZ_BPQU01000070 (original name was: NZ_BPQU01000070.1); NZ_BPQU01000071 (original name was: NZ_BPQU01000071.1); NZ_BPQU01000072 (original name was: NZ_BPQU01000072.1); NZ_BPQU01000073 (original name was: NZ_BPQU01000073.1); NZ_BPQU01000074 (original name was: NZ_BPQU01000074.1); NZ_BPQU01000075 (original name was: NZ_BPQU01000075.1); NZ_BPQU01000076 (original name was: NZ_BPQU01000076.1); NZ_BPQU01000077 (original name was: NZ_BPQU01000077.1); NZ_BPQU01000078 (original name was: NZ_BPQU01000078.1); NZ_BPQU01000079 (original name was: NZ_BPQU01000079.1); NZ_BPQU01000080 (original name was: NZ_BPQU01000080.1); NZ_BPQU01000081 (original name was: NZ_BPQU01000081.1); NZ_BPQU01000082 (original name was: NZ_BPQU01000082.1); NZ_BPQU01000083 (original name was: NZ_BPQU01000083.1); NZ_BPQU01000084 (original name was: NZ_BPQU01000084.1)

Compact view

c00002_NZ_BPQU.. - Region 1 - acetate2butyrate,fatty_acids-unassigned

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Location: 51,105 - 79,293 nt. (total: 28,189 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))
acetate2butyrate: (not (POR or POR_N or PFOR_II) and minimum(4, [Acyl-CoA_dh_1, Acyl-CoA_dh_2, ECH_2, ETF, ETF_alpha, HCDH_N, Thiolase_N, ketoacyl-synt]) and HCDH and minimum(1, [EC1_2-faecali, ECH1_Enoyl_CoA_DH1, ECH1_Enoyl_CoA_DH2, ECH1_Enoyl_CoA_DH3, ECH1_Enoyl_CoA_DH4, Thiolase_C]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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c00002_NZ_BPQU.. - Region 2 - Formate_dehydrogenase

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Location: 82,105 - 107,159 nt. (total: 25,055 nt) Show pHMM detection rules used

Formate_dehydrogenase: (Molybdopterin and Form-deh_trans and not (Nitr_red_bet_C or Nitr_red_alph_N) and minimum(3, [Fer4_11, Fer4_4, Molybdop_Fe4S4, Molydop_binding, Ni_hydr_CYTB]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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c00003_NZ_BPQU.. - Region 1 - TPP_AA_metabolism

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Location: 192,464 - 221,211 nt. (total: 28,748 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

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regulatory genes

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No matches found.

c00008_NZ_BPQU.. - Region 1 - Fumarate2succinate

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Location: 7,095 - 31,855 nt. (total: 24,761 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

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regulatory genes

resistance genes

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c00012_NZ_BPQU.. - Region 1 - Fumarate2succinate

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Location: 94,670 - 117,991 nt. (total: 23,322 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

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c00022_NZ_BPQU.. - Region 1 - NADH_dehydrogenase_I

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Location: 1 - 30,088 nt. (total: 30,088 nt) Show pHMM detection rules used

Region on contig edge.

NADH_dehydrogenase_I: (Oxidored_q4 and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and NADHdh and Oxidored_q3 and Oxidored_q2 and minimum(4, [Fe-2S_thioredx, Fer2_4, Fer4_7, Molybdop_Fe4S4, Molydop_binding, NADH-G_4Fe-4S_3, NADH_4Fe-4S, Proton_antipo_M, Proton_antipo_N, SLBB]))

Legend:

core biosynthetic genes

additional biosynthetic genes

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regulatory genes

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c00026_NZ_BPQU.. - Region 1 - TPP_fatty_acids

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Location: 6,187 - 33,013 nt. (total: 26,827 nt) Show pHMM detection rules used

TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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c00028_NZ_BPQU.. - Region 1 - TPP_AA_metabolism

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Location: 1 - 19,657 nt. (total: 19,657 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

TTA codons

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Gene details

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