GCF_001406295.1_13414_6_75_genomic - 11 region(s)

Identified primary metabolite regions

NZ_CYYA01000001 (original name was: NZ_CYYA01000001.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 1.1	PFOR_II_pathway	SCFA	124,231	147,767	PFOR II pathway B. thetaiotaomicron	PFORII	100%
Region 1.2	Others_HGD_unassigned	Putative	234,048	258,307

NZ_CYYA01000002 (original name was: NZ_CYYA01000002.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 2.1	Rnf_complex	E-MGC	50,189	75,250	Rnf complex C. sporogenes	RNF	83%

NZ_CYYA01000003 (original name was: NZ_CYYA01000003.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 3.1	Others_HGD_unassigned	Putative	85,446	108,582

NZ_CYYA01000005 (original name was: NZ_CYYA01000005.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 5.1	succinate2propionate	SCFA	46,830	71,789	Succinate to propionate A. sp. KLE1797	SUC	28%

NZ_CYYA01000006 (original name was: NZ_CYYA01000006.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 6.1	porA	SCFA	110,352	132,963	porA C. sporogenes	POR	60%

NZ_CYYA01000014 (original name was: NZ_CYYA01000014.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 14.1	Lysine_degradation	SCFA	26,239	52,846	Lysine degradation C. sticklandii	LYS	61%

NZ_CYYA01000016 (original name was: NZ_CYYA01000016.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 16.1	Others_HGD_unassigned	Putative	17,173	39,277

NZ_CYYA01000017 (original name was: NZ_CYYA01000017.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 17.1	fatty_acids-unassigned	Putative	1	12,908	Acetate to butyrate C. sporogenes	BUT	50%

NZ_CYYA01000020 (original name was: NZ_CYYA01000020.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 20.1	Pyruvate2acetate-formate	SCFA	36,580	59,577	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

NZ_CYYA01000034 (original name was: NZ_CYYA01000034.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 34.1	Fumarate2succinate	SCFA	1	13,725

No primary metabolite regions were found in these records:: NZ_CYYA01000004 (original name was: NZ_CYYA01000004.1); NZ_CYYA01000007 (original name was: NZ_CYYA01000007.1); NZ_CYYA01000008 (original name was: NZ_CYYA01000008.1); NZ_CYYA01000009 (original name was: NZ_CYYA01000009.1); NZ_CYYA01000010 (original name was: NZ_CYYA01000010.1); NZ_CYYA01000011 (original name was: NZ_CYYA01000011.1); NZ_CYYA01000012 (original name was: NZ_CYYA01000012.1); NZ_CYYA01000013 (original name was: NZ_CYYA01000013.1); NZ_CYYA01000015 (original name was: NZ_CYYA01000015.1); NZ_CYYA01000018 (original name was: NZ_CYYA01000018.1); NZ_CYYA01000019 (original name was: NZ_CYYA01000019.1); NZ_CYYA01000021 (original name was: NZ_CYYA01000021.1); NZ_CYYA01000022 (original name was: NZ_CYYA01000022.1); NZ_CYYA01000023 (original name was: NZ_CYYA01000023.1); NZ_CYYA01000024 (original name was: NZ_CYYA01000024.1); NZ_CYYA01000025 (original name was: NZ_CYYA01000025.1); NZ_CYYA01000026 (original name was: NZ_CYYA01000026.1); NZ_CYYA01000027 (original name was: NZ_CYYA01000027.1); NZ_CYYA01000028 (original name was: NZ_CYYA01000028.1); NZ_CYYA01000029 (original name was: NZ_CYYA01000029.1); NZ_CYYA01000030 (original name was: NZ_CYYA01000030.1); NZ_CYYA01000031 (original name was: NZ_CYYA01000031.1); NZ_CYYA01000032 (original name was: NZ_CYYA01000032.1); NZ_CYYA01000033 (original name was: NZ_CYYA01000033.1); NZ_CYYA01000035 (original name was: NZ_CYYA01000035.1); NZ_CYYA01000036 (original name was: NZ_CYYA01000036.1); NZ_CYYA01000037 (original name was: NZ_CYYA01000037.1); NZ_CYYA01000038 (original name was: NZ_CYYA01000038.1); NZ_CYYA01000039 (original name was: NZ_CYYA01000039.1); NZ_CYYA01000040 (original name was: NZ_CYYA01000040.1); NZ_CYYA01000041 (original name was: NZ_CYYA01000041.1); NZ_CYYA01000042 (original name was: NZ_CYYA01000042.1); NZ_CYYA01000043 (original name was: NZ_CYYA01000043.1); NZ_CYYA01000044 (original name was: NZ_CYYA01000044.1); NZ_CYYA01000045 (original name was: NZ_CYYA01000045.1); NZ_CYYA01000046 (original name was: NZ_CYYA01000046.1); NZ_CYYA01000047 (original name was: NZ_CYYA01000047.1)

Compact view

c00001_NZ_CYYA.. - Region 1 - PFOR_II_pathway

Download region GenBank file

Location: 124,231 - 147,767 nt. (total: 23,537 nt) Show pHMM detection rules used

PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

c00001_NZ_CYYA.. - Region 2 - Others_HGD_unassigned

Download region GenBank file

Location: 234,048 - 258,307 nt. (total: 24,260 nt) Show pHMM detection rules used

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.

c00002_NZ_CYYA.. - Region 1 - Rnf_complex

Download region GenBank file

Location: 50,189 - 75,250 nt. (total: 25,062 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

c00003_NZ_CYYA.. - Region 1 - Others_HGD_unassigned

Download region GenBank file

Location: 85,446 - 108,582 nt. (total: 23,137 nt) Show pHMM detection rules used

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.

c00005_NZ_CYYA.. - Region 1 - succinate2propionate

Download region GenBank file

Location: 46,830 - 71,789 nt. (total: 24,960 nt) Show pHMM detection rules used

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

c00006_NZ_CYYA.. - Region 1 - porA

Download region GenBank file

Location: 110,352 - 132,963 nt. (total: 22,612 nt) Show pHMM detection rules used

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

c00014_NZ_CYYA.. - Region 1 - Lysine_degradation

Download region GenBank file

Location: 26,239 - 52,846 nt. (total: 26,608 nt) Show pHMM detection rules used

Lysine_degradation: (minimum(1, [AcetylCoA_hydro, CoA_trans, HBT, Lys-AminoMut_A]) and BKACE and LAM_C and Radical_SAM and B12-binding and OAM_dimer)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

c00016_NZ_CYYA.. - Region 1 - Others_HGD_unassigned

Download region GenBank file

Location: 17,173 - 39,277 nt. (total: 22,105 nt) Show pHMM detection rules used

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.

c00017_NZ_CYYA.. - Region 1 - fatty_acids-unassigned

Download region GenBank file

Location: 1 - 12,908 nt. (total: 12,908 nt) Show pHMM detection rules used

Region on contig edge.

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

c00020_NZ_CYYA.. - Region 1 - Pyruvate2acetate-formate

Download region GenBank file

Location: 36,580 - 59,577 nt. (total: 22,998 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

c00034_NZ_CYYA.. - Region 1 - Fumarate2succinate

Download region GenBank file

Location: 1 - 13,725 nt. (total: 13,725 nt) Show pHMM detection rules used

Region on contig edge.

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.