GCF_028321995.1_ASM2832199v1_genomic - 6 region(s)

Identified primary metabolite regions

c00004_NZ_JAQL.. (original name was: NZ_JAQLXG010000013.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 4.1	acetate2butyrate	SCFA	1	21,928	Acetate to butyrate C. sporogenes	BUT	100%

c00033_NZ_JAQL.. (original name was: NZ_JAQLXG010000003.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 33.1	Ech_complex	E-MGC	79,529	104,146	Ech complex T. phaeum	ECH	57%
Region 33.2	Pyruvate2acetate-formate	SCFA	126,980	150,003	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

c00035_NZ_JAQL.. (original name was: NZ_JAQLXG010000005.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 35.1	Others_HGD_unassigned	Putative	66,546	90,716
Region 35.2	Rnf_complex	E-MGC	98,799	119,685	Rnf complex C. sporogenes	RNF	66%

c00037_NZ_JAQL.. (original name was: NZ_JAQLXG010000007.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 37.1	TPP_AA_metabolism	Putative	1,041	28,345

No primary metabolite regions were found in these records:: c00001_NZ_JAQL.. (original name was: NZ_JAQLXG010000010.1); c00002_NZ_JAQL.. (original name was: NZ_JAQLXG010000011.1); c00003_NZ_JAQL.. (original name was: NZ_JAQLXG010000012.1); c00005_NZ_JAQL.. (original name was: NZ_JAQLXG010000014.1); c00006_NZ_JAQL.. (original name was: NZ_JAQLXG010000015.1); c00007_NZ_JAQL.. (original name was: NZ_JAQLXG010000016.1); c00008_NZ_JAQL.. (original name was: NZ_JAQLXG010000017.1); c00009_NZ_JAQL.. (original name was: NZ_JAQLXG010000018.1); c00010_NZ_JAQL.. (original name was: NZ_JAQLXG010000019.1); c00011_NZ_JAQL.. (original name was: NZ_JAQLXG010000001.1); c00012_NZ_JAQL.. (original name was: NZ_JAQLXG010000020.1); c00013_NZ_JAQL.. (original name was: NZ_JAQLXG010000021.1); c00014_NZ_JAQL.. (original name was: NZ_JAQLXG010000022.1); c00015_NZ_JAQL.. (original name was: NZ_JAQLXG010000023.1); c00016_NZ_JAQL.. (original name was: NZ_JAQLXG010000024.1); c00017_NZ_JAQL.. (original name was: NZ_JAQLXG010000025.1); c00018_NZ_JAQL.. (original name was: NZ_JAQLXG010000026.1); c00019_NZ_JAQL.. (original name was: NZ_JAQLXG010000027.1); c00020_NZ_JAQL.. (original name was: NZ_JAQLXG010000028.1); c00021_NZ_JAQL.. (original name was: NZ_JAQLXG010000029.1); c00022_NZ_JAQL.. (original name was: NZ_JAQLXG010000002.1); c00023_NZ_JAQL.. (original name was: NZ_JAQLXG010000030.1); c00024_NZ_JAQL.. (original name was: NZ_JAQLXG010000031.1); c00025_NZ_JAQL.. (original name was: NZ_JAQLXG010000032.1); c00026_NZ_JAQL.. (original name was: NZ_JAQLXG010000033.1); c00027_NZ_JAQL.. (original name was: NZ_JAQLXG010000034.1); c00028_NZ_JAQL.. (original name was: NZ_JAQLXG010000035.1); c00029_NZ_JAQL.. (original name was: NZ_JAQLXG010000036.1); c00030_NZ_JAQL.. (original name was: NZ_JAQLXG010000037.1); c00031_NZ_JAQL.. (original name was: NZ_JAQLXG010000038.1); c00032_NZ_JAQL.. (original name was: NZ_JAQLXG010000039.1); c00034_NZ_JAQL.. (original name was: NZ_JAQLXG010000004.1); c00036_NZ_JAQL.. (original name was: NZ_JAQLXG010000006.1); c00038_NZ_JAQL.. (original name was: NZ_JAQLXG010000008.1); c00039_NZ_JAQL.. (original name was: NZ_JAQLXG010000009.1)

Compact view

c00004_NZ_JAQL.. - Region 1 - acetate2butyrate

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Location: 1 - 21,928 nt. (total: 21,928 nt) Show pHMM detection rules used

Region on contig edge.

acetate2butyrate: (not (POR or POR_N or PFOR_II) and minimum(4, [Acyl-CoA_dh_1, Acyl-CoA_dh_2, ECH_2, ETF, ETF_alpha, HCDH_N, Thiolase_N, ketoacyl-synt]) and HCDH and minimum(1, [EC1_2-faecali, ECH1_Enoyl_CoA_DH1, ECH1_Enoyl_CoA_DH2, ECH1_Enoyl_CoA_DH3, ECH1_Enoyl_CoA_DH4, Thiolase_C]))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

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electron transport genes

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KnownClusterBlast

Similar known gene clusters

c00033_NZ_JAQL.. - Region 1 - Ech_complex

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Location: 79,529 - 104,146 nt. (total: 24,618 nt) Show pHMM detection rules used

Ech_complex: (NADHdh and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and Proton_antipo_M and Proton_antipo_N and not (Oxidored_q4 or Oxidored_q3 or Molybdopterin or Molydop_binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00033_NZ_JAQL.. - Region 2 - Pyruvate2acetate-formate

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Location: 126,980 - 150,003 nt. (total: 23,024 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00035_NZ_JAQL.. - Region 1 - Others_HGD_unassigned

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Location: 66,546 - 90,716 nt. (total: 24,171 nt) Show pHMM detection rules used

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00035_NZ_JAQL.. - Region 2 - Rnf_complex

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Location: 98,799 - 119,685 nt. (total: 20,887 nt) Show pHMM detection rules used

Region on contig edge.

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00037_NZ_JAQL.. - Region 1 - TPP_AA_metabolism

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Location: 1,041 - 28,345 nt. (total: 27,305 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.