GCF_000378425.1_ASM37842v1_genomic - 6 region(s)

Identified primary metabolite regions

NZ_KB899809.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 2.1	fatty_acids-unassigned,acetate2butyrate	SCFA	99,811	132,301	Acetate to butyrate C. sporogenes	BUT	66%

NZ_KB899815.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 8.1	TPP_AA_metabolism	Putative	118,806	133,783

NZ_KB899819.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 12.1	Fumarate2succinate	SCFA	4,037	27,246

NZ_KB899820.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 13.1	Pyruvate2acetate-formate	SCFA	1	15,514	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

NZ_KB899823.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 16.1	Putrescine2spermidine	Aliphatic_amine	72,118	84,198	Arginine degradation C. sticklandii	ARG	22%

NZ_KB899836.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 29.1	NADH_dehydrogenase_I	E-MGC	1	25,716	NADH dehydrogenase I Bacteroides sp.	NADHD	38%

No primary metabolite regions were found in these records:: NZ_KB899808.1; NZ_KB899810.1; NZ_KB899811.1; NZ_KB899812.1; NZ_KB899813.1; NZ_KB899814.1; NZ_KB899816.1; NZ_KB899817.1; NZ_KB899818.1; NZ_KB899821.1; NZ_KB899822.1; NZ_KB899824.1; NZ_KB899825.1; NZ_KB899826.1; NZ_KB899827.1; NZ_KB899828.1; NZ_KB899829.1; NZ_KB899830.1; NZ_KB899831.1; NZ_KB899832.1; NZ_KB899833.1; NZ_KB899834.1; NZ_KB899835.1; NZ_KB899837.1; NZ_KB899838.1; NZ_KB899839.1; NZ_KB899840.1; NZ_KB899841.1; NZ_KB899842.1; NZ_KB899843.1; NZ_KB899844.1; NZ_KB899845.1; NZ_KB899846.1; NZ_KB899847.1; NZ_KB899848.1; NZ_KB899849.1; NZ_KB899850.1; NZ_KB899851.1; NZ_KB899852.1; NZ_KB899853.1; NZ_KB899854.1; NZ_KB899855.1; NZ_KB899856.1; NZ_KB899857.1; NZ_KB899858.1; NZ_KB899859.1; NZ_KB899860.1; NZ_KB899861.1; NZ_KB899862.1; NZ_KB899863.1; NZ_KB899864.1; NZ_KB899865.1; NZ_KB899866.1; NZ_KB899867.1; NZ_KB899868.1; NZ_KB899869.1; NZ_KB899870.1; NZ_KB899871.1; NZ_KB899872.1; NZ_KB899873.1; NZ_KB899874.1; NZ_KB899875.1; NZ_KB899876.1; NZ_KB899877.1; NZ_KB899878.1; NZ_KB899879.1; NZ_KB899880.1; NZ_KB899881.1; NZ_KB899882.1; NZ_KB899883.1; NZ_KB899884.1; NZ_KB899885.1; NZ_KB899886.1; NZ_KB899887.1; NZ_KB899888.1; NZ_KB899889.1; NZ_KB899890.1; NZ_KB899891.1; NZ_KB899892.1; NZ_KB899893.1; NZ_KB899894.1; NZ_KB899895.1; NZ_KB899896.1; NZ_KB899897.1; NZ_KB899898.1; NZ_KB899899.1; NZ_KB899900.1; NZ_KB899901.1; NZ_KB899902.1; NZ_KB899903.1; NZ_KB899904.1; NZ_KB899905.1; NZ_KB899906.1; NZ_KB899907.1; NZ_KB899908.1; NZ_KB899909.1

Compact view

NZ_KB899809.1 - Region 1 - acetate2butyrate,fatty_acids-unassigned

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Location: 99,811 - 132,301 nt. (total: 32,491 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))
acetate2butyrate: (not (POR or POR_N or PFOR_II) and minimum(4, [Acyl-CoA_dh_1, Acyl-CoA_dh_2, ECH_2, ETF, ETF_alpha, HCDH_N, Thiolase_N, ketoacyl-synt]) and HCDH and minimum(1, [EC1_2-faecali, ECH1_Enoyl_CoA_DH1, ECH1_Enoyl_CoA_DH2, ECH1_Enoyl_CoA_DH3, ECH1_Enoyl_CoA_DH4, Thiolase_C]))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

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KnownClusterBlast

Similar known gene clusters

NZ_KB899815.1 - Region 1 - TPP_AA_metabolism

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Location: 118,806 - 133,783 nt. (total: 14,978 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

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regulatory genes

resistance genes

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KnownClusterBlast

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No matches found.

NZ_KB899819.1 - Region 1 - Fumarate2succinate

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Location: 4,037 - 27,246 nt. (total: 23,210 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

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KnownClusterBlast

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No matches found.

NZ_KB899820.1 - Region 1 - Pyruvate2acetate-formate

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Location: 1 - 15,514 nt. (total: 15,514 nt) Show pHMM detection rules used

Region on contig edge.

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

Legend:

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NZ_KB899823.1 - Region 1 - Putrescine2spermidine

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Location: 72,118 - 84,198 nt. (total: 12,081 nt) Show pHMM detection rules used

Region on contig edge.

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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KnownClusterBlast

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NZ_KB899836.1 - Region 1 - NADH_dehydrogenase_I

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Location: 1 - 25,716 nt. (total: 25,716 nt) Show pHMM detection rules used

Region on contig edge.

NADH_dehydrogenase_I: (Oxidored_q4 and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and NADHdh and Oxidored_q3 and Oxidored_q2 and minimum(4, [Fe-2S_thioredx, Fer2_4, Fer4_7, Molybdop_Fe4S4, Molydop_binding, NADH-G_4Fe-4S_3, NADH_4Fe-4S, Proton_antipo_M, Proton_antipo_N, SLBB]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters