GCF_000189275.1_ASM18927v1_genomic - 11 region(s)

Identified primary metabolite regions

NZ_AEVT01000106 (original name was: NZ_AEVT01000106.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 17.1	fatty_acids-unassigned	Putative	29,786	53,216

NZ_AEVT01000099 (original name was: NZ_AEVT01000099.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 22.1	Glycine_cleavage	Other	17,978	45,061	Glycine cleavage C. sticklandii	GLY	60%

NZ_AEVT01000090 (original name was: NZ_AEVT01000090.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 29.1	Arginine2_Hcarbonate	Other	1	16,940	Arginine to hydrogen carbonate P. aeruginosa	ARG	100%

NZ_AEVT01000084 (original name was: NZ_AEVT01000084.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 35.1	Fumarate2succinate	SCFA	21,526	44,021	Fumarate2succinate suc dh E. coli	SUC	100%

NZ_AEVT01000072 (original name was: NZ_AEVT01000072.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 43.1	Fumarate2succinate	SCFA	2,759	25,340	Fumarate2succinate fum red E. coli	SUC	100%

NZ_AEVT01000061 (original name was: NZ_AEVT01000061.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 53.1	Putrescine2spermidine	Aliphatic_amine	1	18,165	Putrescine2spermidine E. rectale	SPRM	40%

NZ_AEVT01000058 (original name was: NZ_AEVT01000058.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 56.1	histidine2glutamate_hutHGIU_operon	Other	104,542	130,116	Histidine to glutamate K. pneumoniae	GLU	100%

NZ_AEVT01000056 (original name was: NZ_AEVT01000056.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 58.1	fatty_acids-unassigned	Putative	1	30,770	Acetate to butyrate C. sporogenes	BUT	50%

NZ_AEVT01000048 (original name was: NZ_AEVT01000048.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 61.1	fatty_acids-unassigned	Putative	1	16,682
Region 61.2	TPP_AA_metabolism	Putative	37,410	63,706

NZ_AEVT01000018 (original name was: NZ_AEVT01000018.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 74.1	Arginine2putrescine	Aliphatic_amine	235,306	258,143	Arginine2putrescine E. coli	PUTR	50%

Region	Type	Class	From	To	Most similar known cluster	Similarity
Region 17.1	fatty_acids-unassigned	Putative	29,786	53,216
Region 22.1	Glycine_cleavage	Other	17,978	45,061	Glycine cleavage C. sticklandii	GLY	60%
Region 29.1	Arginine2_Hcarbonate	Other	1	16,940	Arginine to hydrogen carbonate P. aeruginosa	ARG	100%
Region 35.1	Fumarate2succinate	SCFA	21,526	44,021	Fumarate2succinate suc dh E. coli	SUC	100%
Region 43.1	Fumarate2succinate	SCFA	2,759	25,340	Fumarate2succinate fum red E. coli	SUC	100%
Region 53.1	Putrescine2spermidine	Aliphatic_amine	1	18,165	Putrescine2spermidine E. rectale	SPRM	40%
Region 56.1	histidine2glutamate_hutHGIU_operon	Other	104,542	130,116	Histidine to glutamate K. pneumoniae	GLU	100%
Region 58.1	fatty_acids-unassigned	Putative	1	30,770	Acetate to butyrate C. sporogenes	BUT	50%
Region 61.1	fatty_acids-unassigned	Putative	1	16,682
Region 61.2	TPP_AA_metabolism	Putative	37,410	63,706
Region 74.1	Arginine2putrescine	Aliphatic_amine	235,306	258,143	Arginine2putrescine E. coli	PUTR	50%

No primary metabolite regions were found in these records:: NZ_AEVT01000134 (original name was: NZ_AEVT01000134.1); NZ_AEVT01000133 (original name was: NZ_AEVT01000133.1); NZ_AEVT01000132 (original name was: NZ_AEVT01000132.1); NZ_AEVT01000131 (original name was: NZ_AEVT01000131.1); NZ_AEVT01000130 (original name was: NZ_AEVT01000130.1); NZ_AEVT01000127 (original name was: NZ_AEVT01000127.1); NZ_AEVT01000126 (original name was: NZ_AEVT01000126.1); NZ_AEVT01000123 (original name was: NZ_AEVT01000123.1); NZ_AEVT01000122 (original name was: NZ_AEVT01000122.1); NZ_AEVT01000120 (original name was: NZ_AEVT01000120.1); NZ_AEVT01000118 (original name was: NZ_AEVT01000118.1); NZ_AEVT01000117 (original name was: NZ_AEVT01000117.1); NZ_AEVT01000112 (original name was: NZ_AEVT01000112.1); NZ_AEVT01000110 (original name was: NZ_AEVT01000110.1); NZ_AEVT01000108 (original name was: NZ_AEVT01000108.1); NZ_AEVT01000107 (original name was: NZ_AEVT01000107.1); NZ_AEVT01000105 (original name was: NZ_AEVT01000105.1); NZ_AEVT01000104 (original name was: NZ_AEVT01000104.1); NZ_AEVT01000101 (original name was: NZ_AEVT01000101.1); NZ_AEVT01000100 (original name was: NZ_AEVT01000100.1); NZ_AEVT01000098 (original name was: NZ_AEVT01000098.1); NZ_AEVT01000097 (original name was: NZ_AEVT01000097.1); NZ_AEVT01000096 (original name was: NZ_AEVT01000096.1); NZ_AEVT01000094 (original name was: NZ_AEVT01000094.1); NZ_AEVT01000093 (original name was: NZ_AEVT01000093.1); NZ_AEVT01000092 (original name was: NZ_AEVT01000092.1); NZ_AEVT01000089 (original name was: NZ_AEVT01000089.1); NZ_AEVT01000088 (original name was: NZ_AEVT01000088.1); NZ_AEVT01000087 (original name was: NZ_AEVT01000087.1); NZ_AEVT01000086 (original name was: NZ_AEVT01000086.1); NZ_AEVT01000085 (original name was: NZ_AEVT01000085.1); NZ_AEVT01000083 (original name was: NZ_AEVT01000083.1); NZ_AEVT01000082 (original name was: NZ_AEVT01000082.1); NZ_AEVT01000080 (original name was: NZ_AEVT01000080.1); NZ_AEVT01000079 (original name was: NZ_AEVT01000079.1); NZ_AEVT01000076 (original name was: NZ_AEVT01000076.1); NZ_AEVT01000074 (original name was: NZ_AEVT01000074.1); NZ_AEVT01000073 (original name was: NZ_AEVT01000073.1); NZ_AEVT01000071 (original name was: NZ_AEVT01000071.1); NZ_AEVT01000070 (original name was: NZ_AEVT01000070.1); NZ_AEVT01000069 (original name was: NZ_AEVT01000069.1); NZ_AEVT01000068 (original name was: NZ_AEVT01000068.1); NZ_AEVT01000067 (original name was: NZ_AEVT01000067.1); NZ_AEVT01000065 (original name was: NZ_AEVT01000065.1); NZ_AEVT01000064 (original name was: NZ_AEVT01000064.1); NZ_AEVT01000063 (original name was: NZ_AEVT01000063.1); NZ_AEVT01000062 (original name was: NZ_AEVT01000062.1); NZ_AEVT01000060 (original name was: NZ_AEVT01000060.1); NZ_AEVT01000059 (original name was: NZ_AEVT01000059.1); NZ_AEVT01000057 (original name was: NZ_AEVT01000057.1); NZ_AEVT01000053 (original name was: NZ_AEVT01000053.1); NZ_AEVT01000050 (original name was: NZ_AEVT01000050.1); NZ_AEVT01000044 (original name was: NZ_AEVT01000044.1); NZ_AEVT01000039 (original name was: NZ_AEVT01000039.1); NZ_AEVT01000038 (original name was: NZ_AEVT01000038.1); NZ_AEVT01000034 (original name was: NZ_AEVT01000034.1); NZ_AEVT01000033 (original name was: NZ_AEVT01000033.1); NZ_AEVT01000031 (original name was: NZ_AEVT01000031.1); NZ_AEVT01000028 (original name was: NZ_AEVT01000028.1); NZ_AEVT01000025 (original name was: NZ_AEVT01000025.1); NZ_AEVT01000024 (original name was: NZ_AEVT01000024.1); NZ_AEVT01000023 (original name was: NZ_AEVT01000023.1); NZ_AEVT01000022 (original name was: NZ_AEVT01000022.1); NZ_AEVT01000019 (original name was: NZ_AEVT01000019.1); NZ_AEVT01000017 (original name was: NZ_AEVT01000017.1); NZ_AEVT01000016 (original name was: NZ_AEVT01000016.1); NZ_AEVT01000015 (original name was: NZ_AEVT01000015.1); NZ_AEVT01000013 (original name was: NZ_AEVT01000013.1); NZ_AEVT01000012 (original name was: NZ_AEVT01000012.1); NZ_AEVT01000010 (original name was: NZ_AEVT01000010.1); NZ_AEVT01000009 (original name was: NZ_AEVT01000009.1); NZ_AEVT01000008 (original name was: NZ_AEVT01000008.1); NZ_AEVT01000007 (original name was: NZ_AEVT01000007.1); NZ_AEVT01000006 (original name was: NZ_AEVT01000006.1); NZ_AEVT01000005 (original name was: NZ_AEVT01000005.1); NZ_AEVT01000004 (original name was: NZ_AEVT01000004.1); NZ_AEVT01000003 (original name was: NZ_AEVT01000003.1); NZ_AEVT01000002 (original name was: NZ_AEVT01000002.1); NZ_AEVT01000001 (original name was: NZ_AEVT01000001.1)

Compact view

c00017_NZ_AEVT.. - Region 1 - fatty_acids-unassigned

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Location: 29,786 - 53,216 nt. (total: 23,431 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

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No matches found.

c00022_NZ_AEVT.. - Region 1 - Glycine_cleavage

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Location: 17,978 - 45,061 nt. (total: 27,084 nt) Show pHMM detection rules used

Glycine_cleavage: (minimum(2, [Aminotran_5, GCV_H, GCV_T, GDC-P, SoxG]) and GCV_H and GCV_T_C)

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c00029_NZ_AEVT.. - Region 1 - Arginine2_Hcarbonate

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Location: 1 - 16,940 nt. (total: 16,940 nt) Show pHMM detection rules used

Region on contig edge.

Arginine2_Hcarbonate: (Amidinotransf and OTCace and OTCace_N and AA_kinase)

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c00035_NZ_AEVT.. - Region 1 - Fumarate2succinate

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Location: 21,526 - 44,021 nt. (total: 22,496 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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c00043_NZ_AEVT.. - Region 1 - Fumarate2succinate

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Location: 2,759 - 25,340 nt. (total: 22,582 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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c00053_NZ_AEVT.. - Region 1 - Putrescine2spermidine

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Location: 1 - 18,165 nt. (total: 18,165 nt) Show pHMM detection rules used

Region on contig edge.

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

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c00056_NZ_AEVT.. - Region 1 - histidine2glutamate_hutHGIU_operon

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Location: 104,542 - 130,116 nt. (total: 25,575 nt) Show pHMM detection rules used

histidine2glutamate_hutHGIU_operon: (minimum(3, [Amidohydro_1, Amidohydro_3, Arginase, FGase, Urocanase]) and Lyase_aromatic and Urocanase_C)

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c00058_NZ_AEVT.. - Region 1 - fatty_acids-unassigned

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Location: 1 - 30,770 nt. (total: 30,770 nt) Show pHMM detection rules used

Region on contig edge.

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

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c00061_NZ_AEVT.. - Region 1 - fatty_acids-unassigned

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Location: 1 - 16,682 nt. (total: 16,682 nt) Show pHMM detection rules used

Region on contig edge.

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

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resistance genes

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c00061_NZ_AEVT.. - Region 2 - TPP_AA_metabolism

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Location: 37,410 - 63,706 nt. (total: 26,297 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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c00074_NZ_AEVT.. - Region 1 - Arginine2putrescine

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Location: 235,306 - 258,143 nt. (total: 22,838 nt) Show pHMM detection rules used

Arginine2putrescine: (minimum(3, [AdoMet_dc, Amidinotransf, Arginase, OKR_DC_1, OKR_DC_1_7_arginine, OTCace]) or ((OKR_DC_1_5_ornithine or OKR_DC_1 or Orn_Arg_deC_N) and minimum(1, [Arginase, OTCace, OTCace_N, PAD_porph])))

Legend:

core biosynthetic genes

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transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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