GCF_000374365.1_ASM37436v1_genomic - 8 region(s)

Identified primary metabolite regions

NZ_KB894115.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 1.1	Fumarate2succinate	SCFA	326,892	350,367	Fumarate to succinate B. thetaiotaomicron	SUC	100%

NZ_KB894116.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 2.1	PFOR_II_pathway	SCFA	108,545	132,102	PFOR II pathway B. thetaiotaomicron	PFORII	100%

NZ_KB894119.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 5.1	NADH_dehydrogenase_I	E-MGC	121,723	145,676	NADH dehydrogenase I Bacteroides sp.	NADHD	61%

NZ_KB894120.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 6.1	TPP_AA_metabolism	Putative	15,838	41,930

NZ_KB894130.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 16.1	Respiratory_glycerol	E-MGC	78,049	102,156	GlycerolP to glyceroneP E. coli	GLYP	100%

NZ_KB894133.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 19.1	porA	SCFA	72,022	94,557	porA C. sporogenes	POR	60%

NZ_KB894151.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 37.1	Rnf_complex	E-MGC	9,951	35,246	Rnf complex C. sporogenes	RNF	66%

NZ_KB894194.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 80.1	succinate2propionate	SCFA	1	10,131	Succinate to propionate B. theta	PRO	50%

No primary metabolite regions were found in these records:: NZ_KB894117.1; NZ_KB894118.1; NZ_KB894121.1; NZ_KB894122.1; NZ_KB894123.1; NZ_KB894124.1; NZ_KB894125.1; NZ_KB894126.1; NZ_KB894127.1; NZ_KB894128.1; NZ_KB894129.1; NZ_KB894131.1; NZ_KB894132.1; NZ_KB894134.1; NZ_KB894135.1; NZ_KB894136.1; NZ_KB894137.1; NZ_KB894138.1; NZ_KB894139.1; NZ_KB894140.1; NZ_KB894141.1; NZ_KB894142.1; NZ_KB894143.1; NZ_KB894144.1; NZ_KB894145.1; NZ_KB894146.1; NZ_KB894147.1; NZ_KB894148.1; NZ_KB894149.1; NZ_KB894150.1; NZ_KB894152.1; NZ_KB894153.1; NZ_KB894154.1; NZ_KB894155.1; NZ_KB894156.1; NZ_KB894157.1; NZ_KB894158.1; NZ_KB894159.1; NZ_KB894160.1; NZ_KB894161.1; NZ_KB894162.1; NZ_KB894163.1; NZ_KB894164.1; NZ_KB894165.1; NZ_KB894166.1; NZ_KB894167.1; NZ_KB894168.1; NZ_KB894169.1; NZ_KB894170.1; NZ_KB894171.1; NZ_KB894172.1; NZ_KB894173.1; NZ_KB894174.1; NZ_KB894175.1; NZ_KB894176.1; NZ_KB894177.1; NZ_KB894178.1; NZ_KB894179.1; NZ_KB894180.1; NZ_KB894181.1; NZ_KB894182.1; NZ_KB894183.1; NZ_KB894184.1; NZ_KB894185.1; NZ_KB894186.1; NZ_KB894187.1; NZ_KB894188.1; NZ_KB894189.1; NZ_KB894190.1; NZ_KB894191.1; NZ_KB894192.1; NZ_KB894193.1; NZ_KB894195.1; NZ_KB894196.1; NZ_KB894197.1; NZ_KB894198.1; NZ_KB894199.1; NZ_KB894200.1; NZ_KB894201.1; NZ_KB894202.1; NZ_KB894203.1; NZ_KB894204.1; NZ_KB894205.1; NZ_KB894206.1; NZ_KB894207.1; NZ_KB894208.1; NZ_KB894209.1; NZ_KB894210.1; NZ_KB894211.1; NZ_KB894212.1; NZ_KB894213.1; NZ_KB894214.1; NZ_KB894215.1; NZ_KB894216.1

Compact view

NZ_KB894115.1 - Region 1 - Fumarate2succinate

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Location: 326,892 - 350,367 nt. (total: 23,476 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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NZ_KB894116.1 - Region 1 - PFOR_II_pathway

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Location: 108,545 - 132,102 nt. (total: 23,558 nt) Show pHMM detection rules used

PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

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NZ_KB894119.1 - Region 1 - NADH_dehydrogenase_I

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Location: 121,723 - 145,676 nt. (total: 23,954 nt) Show pHMM detection rules used

Region on contig edge.

NADH_dehydrogenase_I: (Oxidored_q4 and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and NADHdh and Oxidored_q3 and Oxidored_q2 and minimum(4, [Fe-2S_thioredx, Fer2_4, Fer4_7, Molybdop_Fe4S4, Molydop_binding, NADH-G_4Fe-4S_3, NADH_4Fe-4S, Proton_antipo_M, Proton_antipo_N, SLBB]))

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NZ_KB894120.1 - Region 1 - TPP_AA_metabolism

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Location: 15,838 - 41,930 nt. (total: 26,093 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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No matches found.

NZ_KB894130.1 - Region 1 - Respiratory_glycerol

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Location: 78,049 - 102,156 nt. (total: 24,108 nt) Show pHMM detection rules used

Respiratory_glycerol: (DAO and Fer2_BFD and FAD_binding_2 and Fer4_8)

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NZ_KB894133.1 - Region 1 - porA

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Location: 72,022 - 94,557 nt. (total: 22,536 nt) Show pHMM detection rules used

Region on contig edge.

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

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NZ_KB894151.1 - Region 1 - Rnf_complex

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Location: 9,951 - 35,246 nt. (total: 25,296 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

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NZ_KB894194.1 - Region 1 - succinate2propionate

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Location: 1 - 10,131 nt. (total: 10,131 nt) Show pHMM detection rules used

Region on contig edge.

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

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