GCF_021412605.1_ASM2141260v1_genomic - 6 region(s)

Identified primary metabolite regions

c00004_NZ_JAJK.. (original name was: NZ_JAJKGM010000010.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 4.1	TPP_AA_metabolism	Putative	756	40,861
Region 4.2	acetate2butyrate	SCFA	70,399	91,679	Acetate to butyrate C. sporogenes	BUT	83%

c00008_NZ_JAJK.. (original name was: NZ_JAJKGM010000014.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 8.1	PFOR_II_pathway	SCFA	54	35,091

c00011_NZ_JAJK.. (original name was: NZ_JAJKGM010000017.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 11.1	Ech_complex	E-MGC	35,119	63,506	Ech complex T. phaeum	ECH	28%

c00024_NZ_JAJK.. (original name was: NZ_JAJKGM010000029.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 24.1	Others_HGD_unassigned	Putative	10,130	34,449

c00091_NZ_JAJK.. (original name was: NZ_JAJKGM010000008.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 91.1	Ech_complex	E-MGC	18,324	43,025	Ech complex T. phaeum	ECH	71%

Region	Type	Class	From	To	Most similar known cluster	Similarity
Region 4.1	TPP_AA_metabolism	Putative	756	40,861
Region 4.2	acetate2butyrate	SCFA	70,399	91,679	Acetate to butyrate C. sporogenes	BUT	83%
Region 8.1	PFOR_II_pathway	SCFA	54	35,091
Region 11.1	Ech_complex	E-MGC	35,119	63,506	Ech complex T. phaeum	ECH	28%
Region 24.1	Others_HGD_unassigned	Putative	10,130	34,449
Region 91.1	Ech_complex	E-MGC	18,324	43,025	Ech complex T. phaeum	ECH	71%

No primary metabolite regions were found in these records:: c00001_NZ_JAJK.. (original name was: NZ_JAJKGM010000100.1); c00002_NZ_JAJK.. (original name was: NZ_JAJKGM010000101.1); c00003_NZ_JAJK.. (original name was: NZ_JAJKGM010000102.1); c00005_NZ_JAJK.. (original name was: NZ_JAJKGM010000011.1); c00006_NZ_JAJK.. (original name was: NZ_JAJKGM010000012.1); c00007_NZ_JAJK.. (original name was: NZ_JAJKGM010000013.1); c00009_NZ_JAJK.. (original name was: NZ_JAJKGM010000015.1); c00010_NZ_JAJK.. (original name was: NZ_JAJKGM010000016.1); c00012_NZ_JAJK.. (original name was: NZ_JAJKGM010000018.1); c00013_NZ_JAJK.. (original name was: NZ_JAJKGM010000019.1); c00014_NZ_JAJK.. (original name was: NZ_JAJKGM010000001.1); c00015_NZ_JAJK.. (original name was: NZ_JAJKGM010000020.1); c00016_NZ_JAJK.. (original name was: NZ_JAJKGM010000021.1); c00017_NZ_JAJK.. (original name was: NZ_JAJKGM010000022.1); c00018_NZ_JAJK.. (original name was: NZ_JAJKGM010000023.1); c00019_NZ_JAJK.. (original name was: NZ_JAJKGM010000024.1); c00020_NZ_JAJK.. (original name was: NZ_JAJKGM010000025.1); c00021_NZ_JAJK.. (original name was: NZ_JAJKGM010000026.1); c00022_NZ_JAJK.. (original name was: NZ_JAJKGM010000027.1); c00023_NZ_JAJK.. (original name was: NZ_JAJKGM010000028.1); c00025_NZ_JAJK.. (original name was: NZ_JAJKGM010000002.1); c00026_NZ_JAJK.. (original name was: NZ_JAJKGM010000030.1); c00027_NZ_JAJK.. (original name was: NZ_JAJKGM010000031.1); c00028_NZ_JAJK.. (original name was: NZ_JAJKGM010000032.1); c00029_NZ_JAJK.. (original name was: NZ_JAJKGM010000033.1); c00030_NZ_JAJK.. (original name was: NZ_JAJKGM010000034.1); c00031_NZ_JAJK.. (original name was: NZ_JAJKGM010000035.1); c00032_NZ_JAJK.. (original name was: NZ_JAJKGM010000036.1); c00033_NZ_JAJK.. (original name was: NZ_JAJKGM010000037.1); c00034_NZ_JAJK.. (original name was: NZ_JAJKGM010000038.1); c00035_NZ_JAJK.. (original name was: NZ_JAJKGM010000039.1); c00036_NZ_JAJK.. (original name was: NZ_JAJKGM010000003.1); c00037_NZ_JAJK.. (original name was: NZ_JAJKGM010000040.1); c00038_NZ_JAJK.. (original name was: NZ_JAJKGM010000041.1); c00039_NZ_JAJK.. (original name was: NZ_JAJKGM010000042.1); c00040_NZ_JAJK.. (original name was: NZ_JAJKGM010000043.1); c00041_NZ_JAJK.. (original name was: NZ_JAJKGM010000044.1); c00042_NZ_JAJK.. (original name was: NZ_JAJKGM010000045.1); c00043_NZ_JAJK.. (original name was: NZ_JAJKGM010000046.1); c00044_NZ_JAJK.. (original name was: NZ_JAJKGM010000047.1); c00045_NZ_JAJK.. (original name was: NZ_JAJKGM010000048.1); c00046_NZ_JAJK.. (original name was: NZ_JAJKGM010000049.1); c00047_NZ_JAJK.. (original name was: NZ_JAJKGM010000004.1); c00048_NZ_JAJK.. (original name was: NZ_JAJKGM010000050.1); c00049_NZ_JAJK.. (original name was: NZ_JAJKGM010000051.1); c00050_NZ_JAJK.. (original name was: NZ_JAJKGM010000052.1); c00051_NZ_JAJK.. (original name was: NZ_JAJKGM010000053.1); c00052_NZ_JAJK.. (original name was: NZ_JAJKGM010000054.1); c00053_NZ_JAJK.. (original name was: NZ_JAJKGM010000055.1); c00054_NZ_JAJK.. (original name was: NZ_JAJKGM010000056.1); c00055_NZ_JAJK.. (original name was: NZ_JAJKGM010000057.1); c00056_NZ_JAJK.. (original name was: NZ_JAJKGM010000058.1); c00057_NZ_JAJK.. (original name was: NZ_JAJKGM010000059.1); c00058_NZ_JAJK.. (original name was: NZ_JAJKGM010000005.1); c00059_NZ_JAJK.. (original name was: NZ_JAJKGM010000060.1); c00060_NZ_JAJK.. (original name was: NZ_JAJKGM010000061.1); c00061_NZ_JAJK.. (original name was: NZ_JAJKGM010000062.1); c00062_NZ_JAJK.. (original name was: NZ_JAJKGM010000063.1); c00063_NZ_JAJK.. (original name was: NZ_JAJKGM010000064.1); c00064_NZ_JAJK.. (original name was: NZ_JAJKGM010000065.1); c00065_NZ_JAJK.. (original name was: NZ_JAJKGM010000066.1); c00066_NZ_JAJK.. (original name was: NZ_JAJKGM010000067.1); c00067_NZ_JAJK.. (original name was: NZ_JAJKGM010000068.1); c00068_NZ_JAJK.. (original name was: NZ_JAJKGM010000069.1); c00069_NZ_JAJK.. (original name was: NZ_JAJKGM010000006.1); c00070_NZ_JAJK.. (original name was: NZ_JAJKGM010000070.1); c00071_NZ_JAJK.. (original name was: NZ_JAJKGM010000071.1); c00072_NZ_JAJK.. (original name was: NZ_JAJKGM010000072.1); c00073_NZ_JAJK.. (original name was: NZ_JAJKGM010000073.1); c00074_NZ_JAJK.. (original name was: NZ_JAJKGM010000074.1); c00075_NZ_JAJK.. (original name was: NZ_JAJKGM010000075.1); c00076_NZ_JAJK.. (original name was: NZ_JAJKGM010000076.1); c00077_NZ_JAJK.. (original name was: NZ_JAJKGM010000077.1); c00078_NZ_JAJK.. (original name was: NZ_JAJKGM010000078.1); c00079_NZ_JAJK.. (original name was: NZ_JAJKGM010000079.1); c00080_NZ_JAJK.. (original name was: NZ_JAJKGM010000007.1); c00081_NZ_JAJK.. (original name was: NZ_JAJKGM010000080.1); c00082_NZ_JAJK.. (original name was: NZ_JAJKGM010000081.1); c00083_NZ_JAJK.. (original name was: NZ_JAJKGM010000082.1); c00084_NZ_JAJK.. (original name was: NZ_JAJKGM010000083.1); c00085_NZ_JAJK.. (original name was: NZ_JAJKGM010000084.1); c00086_NZ_JAJK.. (original name was: NZ_JAJKGM010000085.1); c00087_NZ_JAJK.. (original name was: NZ_JAJKGM010000086.1); c00088_NZ_JAJK.. (original name was: NZ_JAJKGM010000087.1); c00089_NZ_JAJK.. (original name was: NZ_JAJKGM010000088.1); c00090_NZ_JAJK.. (original name was: NZ_JAJKGM010000089.1); c00092_NZ_JAJK.. (original name was: NZ_JAJKGM010000090.1); c00093_NZ_JAJK.. (original name was: NZ_JAJKGM010000091.1); c00094_NZ_JAJK.. (original name was: NZ_JAJKGM010000092.1); c00095_NZ_JAJK.. (original name was: NZ_JAJKGM010000093.1); c00096_NZ_JAJK.. (original name was: NZ_JAJKGM010000094.1); c00097_NZ_JAJK.. (original name was: NZ_JAJKGM010000095.1); c00098_NZ_JAJK.. (original name was: NZ_JAJKGM010000096.1); c00099_NZ_JAJK.. (original name was: NZ_JAJKGM010000097.1); c00100_NZ_JAJK.. (original name was: NZ_JAJKGM010000098.1); c00101_NZ_JAJK.. (original name was: NZ_JAJKGM010000099.1); c00102_NZ_JAJK.. (original name was: NZ_JAJKGM010000009.1)

Compact view

c00004_NZ_JAJK.. - Region 1 - TPP_AA_metabolism

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Location: 756 - 40,861 nt. (total: 40,106 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00004_NZ_JAJK.. - Region 2 - acetate2butyrate

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Location: 70,399 - 91,679 nt. (total: 21,281 nt) Show pHMM detection rules used

Region on contig edge.

acetate2butyrate: (not (POR or POR_N or PFOR_II) and minimum(4, [Acyl-CoA_dh_1, Acyl-CoA_dh_2, ECH_2, ETF, ETF_alpha, HCDH_N, Thiolase_N, ketoacyl-synt]) and HCDH and minimum(1, [EC1_2-faecali, ECH1_Enoyl_CoA_DH1, ECH1_Enoyl_CoA_DH2, ECH1_Enoyl_CoA_DH3, ECH1_Enoyl_CoA_DH4, Thiolase_C]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

c00008_NZ_JAJK.. - Region 1 - PFOR_II_pathway

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Location: 54 - 35,091 nt. (total: 35,038 nt) Show pHMM detection rules used

PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.

c00011_NZ_JAJK.. - Region 1 - Ech_complex

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Location: 35,119 - 63,506 nt. (total: 28,388 nt) Show pHMM detection rules used

Ech_complex: (NADHdh and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and Proton_antipo_M and Proton_antipo_N and not (Oxidored_q4 or Oxidored_q3 or Molybdopterin or Molydop_binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

c00024_NZ_JAJK.. - Region 1 - Others_HGD_unassigned

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Location: 10,130 - 34,449 nt. (total: 24,320 nt) Show pHMM detection rules used

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.

c00091_NZ_JAJK.. - Region 1 - Ech_complex

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Location: 18,324 - 43,025 nt. (total: 24,702 nt) Show pHMM detection rules used

Ech_complex: (NADHdh and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and Proton_antipo_M and Proton_antipo_N and not (Oxidored_q4 or Oxidored_q3 or Molybdopterin or Molydop_binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters