GCF_000235885.1_ASM23588v1_genomic - 5 region(s)

Identified primary metabolite regions

NZ_JH379375.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 39.1	NADH_dehydrogenase_I	E-MGC	1	22,698	NADH dehydrogenase I Bacteroides sp.	NADHD	42%

NZ_JH379380.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 42.1	PFOR_II_pathway	SCFA	17,305	36,475	PFOR II pathway B. thetaiotaomicron	PFORII	100%

NZ_JH379381.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 43.1	TPP_AA_metabolism	Putative	1	25,902	NADH dehydrogenase I Bacteroides sp.	NADHD	14%

NZ_JH379438.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 88.1	Fumarate2succinate	SCFA	1	11,819	Fumarate to succinate B. thetaiotaomicron	SUC	100%

NZ_JH379474.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 116.1	Glycine_cleavage	Other	793	25,230	Glycine cleavage C. sticklandii	GLY	80%

No primary metabolite regions were found in these records:: NZ_JH379330.1; NZ_JH379331.1; NZ_JH379332.1; NZ_JH379334.1; NZ_JH379335.1; NZ_JH379338.1; NZ_JH379339.1; NZ_JH379340.1; NZ_JH379341.1; NZ_JH379342.1; NZ_JH379343.1; NZ_JH379344.1; NZ_JH379345.1; NZ_JH379346.1; NZ_JH379347.1; NZ_JH379348.1; NZ_JH379350.1; NZ_JH379351.1; NZ_JH379352.1; NZ_JH379355.1; NZ_JH379356.1; NZ_JH379357.1; NZ_JH379358.1; NZ_JH379359.1; NZ_JH379360.1; NZ_JH379361.1; NZ_JH379362.1; NZ_JH379363.1; NZ_JH379364.1; NZ_JH379365.1; NZ_JH379366.1; NZ_JH379367.1; NZ_JH379368.1; NZ_JH379370.1; NZ_JH379371.1; NZ_JH379372.1; NZ_JH379373.1; NZ_JH379374.1; NZ_JH379377.1; NZ_JH379378.1; NZ_JH379383.1; NZ_JH379384.1; NZ_JH379385.1; NZ_JH379386.1; NZ_JH379387.1; NZ_JH379391.1; NZ_JH379394.1; NZ_JH379395.1; NZ_JH379396.1; NZ_JH379397.1; NZ_JH379398.1; NZ_JH379399.1; NZ_JH379400.1; NZ_JH379401.1; NZ_JH379403.1; NZ_JH379404.1; NZ_JH379405.1; NZ_JH379406.1; NZ_JH379407.1; NZ_JH379408.1; NZ_JH379409.1; NZ_JH379410.1; NZ_JH379411.1; NZ_JH379412.1; NZ_JH379413.1; NZ_JH379414.1; NZ_JH379415.1; NZ_JH379416.1; NZ_JH379417.1; NZ_JH379418.1; NZ_JH379419.1; NZ_JH379420.1; NZ_JH379423.1; NZ_JH379424.1; NZ_JH379425.1; NZ_JH379426.1; NZ_JH379427.1; NZ_JH379428.1; NZ_JH379430.1; NZ_JH379433.1; NZ_JH379434.1; NZ_JH379435.1; NZ_JH379436.1; NZ_JH379437.1; NZ_JH379439.1; NZ_JH379441.1; NZ_JH379442.1; NZ_JH379443.1; NZ_JH379444.1; NZ_JH379445.1; NZ_JH379446.1; NZ_JH379448.1; NZ_JH379449.1; NZ_JH379450.1; NZ_JH379452.1; NZ_JH379456.1; NZ_JH379457.1; NZ_JH379458.1; NZ_JH379459.1; NZ_JH379460.1; NZ_JH379461.1; NZ_JH379462.1; NZ_JH379463.1; NZ_JH379464.1; NZ_JH379465.1; NZ_JH379466.1; NZ_JH379469.1; NZ_JH379470.1; NZ_JH379471.1; NZ_JH379472.1; NZ_JH379473.1; NZ_JH379475.1; NZ_JH379476.1; NZ_JH379477.1

Compact view

NZ_JH379375.1 - Region 1 - NADH_dehydrogenase_I

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Location: 1 - 22,698 nt. (total: 22,698 nt) Show pHMM detection rules used

Region on contig edge.

NADH_dehydrogenase_I: (Oxidored_q4 and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and NADHdh and Oxidored_q3 and Oxidored_q2 and minimum(4, [Fe-2S_thioredx, Fer2_4, Fer4_7, Molybdop_Fe4S4, Molydop_binding, NADH-G_4Fe-4S_3, NADH_4Fe-4S, Proton_antipo_M, Proton_antipo_N, SLBB]))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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KnownClusterBlast

Similar known gene clusters

NZ_JH379380.1 - Region 1 - PFOR_II_pathway

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Location: 17,305 - 36,475 nt. (total: 19,171 nt) Show pHMM detection rules used

Region on contig edge.

PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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KnownClusterBlast

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NZ_JH379381.1 - Region 1 - TPP_AA_metabolism

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Location: 1 - 25,902 nt. (total: 25,902 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

NZ_JH379438.1 - Region 1 - Fumarate2succinate

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Location: 1 - 11,819 nt. (total: 11,819 nt) Show pHMM detection rules used

Region on contig edge.

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

NZ_JH379474.1 - Region 1 - Glycine_cleavage

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Location: 793 - 25,230 nt. (total: 24,438 nt) Show pHMM detection rules used

Glycine_cleavage: (minimum(2, [Aminotran_5, GCV_H, GCV_T, GDC-P, SoxG]) and GCV_H and GCV_T_C)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters