GCF_000147675.1_ASM14767v1_genomic - 6 region(s)

Identified primary metabolite regions

NZ_ADGQ01000072 (original name was: NZ_ADGQ01000072.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 3.1	Others_HGD_unassigned	Putative	3,541	31,555	Leucine reductive branch C. sporogenes	LEU	75%

NZ_ADGQ01000050 (original name was: NZ_ADGQ01000050.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 21.1	PFOR_II_pathway	SCFA	6,961	30,494	PFOR II pathway B. thetaiotaomicron	PFORII	100%

NZ_ADGQ01000046 (original name was: NZ_ADGQ01000046.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 24.1	Others_HGD_unassigned,porA	SCFA	1	27,815	porA C. sporogenes	POR	80%

NZ_ADGQ01000032 (original name was: NZ_ADGQ01000032.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 31.1	Leucine_reduction	SCFA	1	24,431	Aromatic amino acid reductive branch C. sporogenes	AAA	58%

NZ_ADGQ01000027 (original name was: NZ_ADGQ01000027.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 35.1	Others_HGD_unassigned	Putative	9,154	33,458

NZ_ADGQ01000001 (original name was: NZ_ADGQ01000001.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 52.1	Rnf_complex	E-MGC	2,971	27,958	Rnf complex C. sporogenes	RNF	100%

No primary metabolite regions were found in these records:: NZ_ADGQ01000074 (original name was: NZ_ADGQ01000074.1); NZ_ADGQ01000073 (original name was: NZ_ADGQ01000073.1); NZ_ADGQ01000071 (original name was: NZ_ADGQ01000071.1); NZ_ADGQ01000070 (original name was: NZ_ADGQ01000070.1); NZ_ADGQ01000069 (original name was: NZ_ADGQ01000069.1); NZ_ADGQ01000068 (original name was: NZ_ADGQ01000068.1); NZ_ADGQ01000066 (original name was: NZ_ADGQ01000066.1); NZ_ADGQ01000065 (original name was: NZ_ADGQ01000065.1); NZ_ADGQ01000064 (original name was: NZ_ADGQ01000064.1); NZ_ADGQ01000063 (original name was: NZ_ADGQ01000063.1); NZ_ADGQ01000062 (original name was: NZ_ADGQ01000062.1); NZ_ADGQ01000061 (original name was: NZ_ADGQ01000061.1); NZ_ADGQ01000060 (original name was: NZ_ADGQ01000060.1); NZ_ADGQ01000059 (original name was: NZ_ADGQ01000059.1); NZ_ADGQ01000057 (original name was: NZ_ADGQ01000057.1); NZ_ADGQ01000056 (original name was: NZ_ADGQ01000056.1); NZ_ADGQ01000055 (original name was: NZ_ADGQ01000055.1); NZ_ADGQ01000054 (original name was: NZ_ADGQ01000054.1); NZ_ADGQ01000051 (original name was: NZ_ADGQ01000051.1); NZ_ADGQ01000048 (original name was: NZ_ADGQ01000048.1); NZ_ADGQ01000047 (original name was: NZ_ADGQ01000047.1); NZ_ADGQ01000044 (original name was: NZ_ADGQ01000044.1); NZ_ADGQ01000043 (original name was: NZ_ADGQ01000043.1); NZ_ADGQ01000041 (original name was: NZ_ADGQ01000041.1); NZ_ADGQ01000038 (original name was: NZ_ADGQ01000038.1); NZ_ADGQ01000035 (original name was: NZ_ADGQ01000035.1); NZ_ADGQ01000034 (original name was: NZ_ADGQ01000034.1); NZ_ADGQ01000030 (original name was: NZ_ADGQ01000030.1); NZ_ADGQ01000029 (original name was: NZ_ADGQ01000029.1); NZ_ADGQ01000028 (original name was: NZ_ADGQ01000028.1); NZ_ADGQ01000026 (original name was: NZ_ADGQ01000026.1); NZ_ADGQ01000025 (original name was: NZ_ADGQ01000025.1); NZ_ADGQ01000024 (original name was: NZ_ADGQ01000024.1); NZ_ADGQ01000022 (original name was: NZ_ADGQ01000022.1); NZ_ADGQ01000019 (original name was: NZ_ADGQ01000019.1); NZ_ADGQ01000018 (original name was: NZ_ADGQ01000018.1); NZ_ADGQ01000016 (original name was: NZ_ADGQ01000016.1); NZ_ADGQ01000015 (original name was: NZ_ADGQ01000015.1); NZ_ADGQ01000014 (original name was: NZ_ADGQ01000014.1); NZ_ADGQ01000013 (original name was: NZ_ADGQ01000013.1); NZ_ADGQ01000011 (original name was: NZ_ADGQ01000011.1); NZ_ADGQ01000010 (original name was: NZ_ADGQ01000010.1); NZ_ADGQ01000009 (original name was: NZ_ADGQ01000009.1); NZ_ADGQ01000008 (original name was: NZ_ADGQ01000008.1); NZ_ADGQ01000004 (original name was: NZ_ADGQ01000004.1); NZ_ADGQ01000002 (original name was: NZ_ADGQ01000002.1)

Compact view

c00003_NZ_ADGQ.. - Region 1 - Others_HGD_unassigned

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Location: 3,541 - 31,555 nt. (total: 28,015 nt) Show pHMM detection rules used

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

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c00021_NZ_ADGQ.. - Region 1 - PFOR_II_pathway

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Location: 6,961 - 30,494 nt. (total: 23,534 nt) Show pHMM detection rules used

PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

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c00024_NZ_ADGQ.. - Region 1 - Others_HGD_unassigned,porA

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Location: 1 - 27,815 nt. (total: 27,815 nt) Show pHMM detection rules used

Region on contig edge.

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))
porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

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c00031_NZ_ADGQ.. - Region 1 - Leucine_reduction

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Location: 1 - 24,431 nt. (total: 24,431 nt) Show pHMM detection rules used

Region on contig edge.

Leucine_reduction: (minimum(3, [Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, CoA_transf_3, ETF, ETF_alpha, FGGY_C, HCDH, Hacid_dh_C, Lactoyl-CoA1, Lactoyl-CoA2, MreB_Mbl, NAD_binding_2, Peptidase_M22, UDPG_MGDP_dh_N]) and minimum(1, [HleuD1, HleuD2, HleuS1, HleuS2]))

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c00035_NZ_ADGQ.. - Region 1 - Others_HGD_unassigned

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Location: 9,154 - 33,458 nt. (total: 24,305 nt) Show pHMM detection rules used

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

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resistance genes

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c00052_NZ_ADGQ.. - Region 1 - Rnf_complex

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Location: 2,971 - 27,958 nt. (total: 24,988 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

Legend:

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