GCF_008571395.1_ASM857139v1_genomic - 9 region(s)

Identified primary metabolite regions

NZ_VWAM01000016 (original name was: NZ_VWAM01000016.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 26.1	Rnf_complex	E-MGC	16,507	41,675	Rnf complex C. sporogenes	RNF	66%

NZ_VWAM01000028 (original name was: NZ_VWAM01000028.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 39.1	Pyruvate2acetate-formate	SCFA	1,374	24,346	Pyruvate to acetate-formate B. thetaiotaomicron	PFL_acetate	100%

NZ_VWAM01000002 (original name was: NZ_VWAM01000002.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 41.1	TPP_AA_metabolism	Putative	114,921	140,948

NZ_VWAM01000034 (original name was: NZ_VWAM01000034.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 46.1	succinate2propionate	SCFA	1	22,796	Succinate to propionate B. theta	PRO	91%

NZ_VWAM01000036 (original name was: NZ_VWAM01000036.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 48.1	TPP_fatty_acids	Putative	1	23,314
Region 48.2	porA	SCFA	26,800	40,795	porA C. sporogenes	POR	60%

NZ_VWAM01000042 (original name was: NZ_VWAM01000042.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 55.1	PFOR_II_pathway	SCFA	17,997	34,833	PFOR II pathway B. thetaiotaomicron	PFORII	100%

NZ_VWAM01000004 (original name was: NZ_VWAM01000004.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 63.1	Fumarate2succinate	SCFA	233,661	247,549	Fumarate to succinate B. thetaiotaomicron	SUC	100%

NZ_VWAM01000008 (original name was: NZ_VWAM01000008.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 107.1	NADH_dehydrogenase_I	E-MGC	16,995	46,928	NADH dehydrogenase I Bacteroides sp.	NADHD	76%

No primary metabolite regions were found in these records:: NZ_VWAM01000100 (original name was: NZ_VWAM01000100.1); NZ_VWAM01000101 (original name was: NZ_VWAM01000101.1); NZ_VWAM01000102 (original name was: NZ_VWAM01000102.1); NZ_VWAM01000103 (original name was: NZ_VWAM01000103.1); NZ_VWAM01000104 (original name was: NZ_VWAM01000104.1); NZ_VWAM01000105 (original name was: NZ_VWAM01000105.1); NZ_VWAM01000106 (original name was: NZ_VWAM01000106.1); NZ_VWAM01000107 (original name was: NZ_VWAM01000107.1); NZ_VWAM01000108 (original name was: NZ_VWAM01000108.1); NZ_VWAM01000109 (original name was: NZ_VWAM01000109.1); NZ_VWAM01000010 (original name was: NZ_VWAM01000010.1); NZ_VWAM01000110 (original name was: NZ_VWAM01000110.1); NZ_VWAM01000111 (original name was: NZ_VWAM01000111.1); NZ_VWAM01000112 (original name was: NZ_VWAM01000112.1); NZ_VWAM01000113 (original name was: NZ_VWAM01000113.1); NZ_VWAM01000114 (original name was: NZ_VWAM01000114.1); NZ_VWAM01000115 (original name was: NZ_VWAM01000115.1); NZ_VWAM01000011 (original name was: NZ_VWAM01000011.1); NZ_VWAM01000116 (original name was: NZ_VWAM01000116.1); NZ_VWAM01000012 (original name was: NZ_VWAM01000012.1); NZ_VWAM01000117 (original name was: NZ_VWAM01000117.1); NZ_VWAM01000013 (original name was: NZ_VWAM01000013.1); NZ_VWAM01000118 (original name was: NZ_VWAM01000118.1); NZ_VWAM01000014 (original name was: NZ_VWAM01000014.1); NZ_VWAM01000015 (original name was: NZ_VWAM01000015.1); NZ_VWAM01000017 (original name was: NZ_VWAM01000017.1); NZ_VWAM01000018 (original name was: NZ_VWAM01000018.1); NZ_VWAM01000019 (original name was: NZ_VWAM01000019.1); NZ_VWAM01000001 (original name was: NZ_VWAM01000001.1); NZ_VWAM01000020 (original name was: NZ_VWAM01000020.1); NZ_VWAM01000021 (original name was: NZ_VWAM01000021.1); NZ_VWAM01000022 (original name was: NZ_VWAM01000022.1); NZ_VWAM01000023 (original name was: NZ_VWAM01000023.1); NZ_VWAM01000024 (original name was: NZ_VWAM01000024.1); NZ_VWAM01000025 (original name was: NZ_VWAM01000025.1); NZ_VWAM01000026 (original name was: NZ_VWAM01000026.1); NZ_VWAM01000027 (original name was: NZ_VWAM01000027.1); NZ_VWAM01000029 (original name was: NZ_VWAM01000029.1); NZ_VWAM01000030 (original name was: NZ_VWAM01000030.1); NZ_VWAM01000031 (original name was: NZ_VWAM01000031.1); NZ_VWAM01000032 (original name was: NZ_VWAM01000032.1); NZ_VWAM01000033 (original name was: NZ_VWAM01000033.1); NZ_VWAM01000035 (original name was: NZ_VWAM01000035.1); NZ_VWAM01000037 (original name was: NZ_VWAM01000037.1); NZ_VWAM01000038 (original name was: NZ_VWAM01000038.1); NZ_VWAM01000039 (original name was: NZ_VWAM01000039.1); NZ_VWAM01000003 (original name was: NZ_VWAM01000003.1); NZ_VWAM01000040 (original name was: NZ_VWAM01000040.1); NZ_VWAM01000041 (original name was: NZ_VWAM01000041.1); NZ_VWAM01000043 (original name was: NZ_VWAM01000043.1); NZ_VWAM01000044 (original name was: NZ_VWAM01000044.1); NZ_VWAM01000045 (original name was: NZ_VWAM01000045.1); NZ_VWAM01000046 (original name was: NZ_VWAM01000046.1); NZ_VWAM01000047 (original name was: NZ_VWAM01000047.1); NZ_VWAM01000048 (original name was: NZ_VWAM01000048.1); NZ_VWAM01000049 (original name was: NZ_VWAM01000049.1); NZ_VWAM01000050 (original name was: NZ_VWAM01000050.1); NZ_VWAM01000051 (original name was: NZ_VWAM01000051.1); NZ_VWAM01000052 (original name was: NZ_VWAM01000052.1); NZ_VWAM01000053 (original name was: NZ_VWAM01000053.1); NZ_VWAM01000054 (original name was: NZ_VWAM01000054.1); NZ_VWAM01000055 (original name was: NZ_VWAM01000055.1); NZ_VWAM01000056 (original name was: NZ_VWAM01000056.1); NZ_VWAM01000057 (original name was: NZ_VWAM01000057.1); NZ_VWAM01000058 (original name was: NZ_VWAM01000058.1); NZ_VWAM01000059 (original name was: NZ_VWAM01000059.1); NZ_VWAM01000005 (original name was: NZ_VWAM01000005.1); NZ_VWAM01000060 (original name was: NZ_VWAM01000060.1); NZ_VWAM01000061 (original name was: NZ_VWAM01000061.1); NZ_VWAM01000062 (original name was: NZ_VWAM01000062.1); NZ_VWAM01000063 (original name was: NZ_VWAM01000063.1); NZ_VWAM01000064 (original name was: NZ_VWAM01000064.1); NZ_VWAM01000065 (original name was: NZ_VWAM01000065.1); NZ_VWAM01000066 (original name was: NZ_VWAM01000066.1); NZ_VWAM01000067 (original name was: NZ_VWAM01000067.1); NZ_VWAM01000068 (original name was: NZ_VWAM01000068.1); NZ_VWAM01000069 (original name was: NZ_VWAM01000069.1); NZ_VWAM01000006 (original name was: NZ_VWAM01000006.1); NZ_VWAM01000070 (original name was: NZ_VWAM01000070.1); NZ_VWAM01000071 (original name was: NZ_VWAM01000071.1); NZ_VWAM01000072 (original name was: NZ_VWAM01000072.1); NZ_VWAM01000073 (original name was: NZ_VWAM01000073.1); NZ_VWAM01000074 (original name was: NZ_VWAM01000074.1); NZ_VWAM01000075 (original name was: NZ_VWAM01000075.1); NZ_VWAM01000076 (original name was: NZ_VWAM01000076.1); NZ_VWAM01000077 (original name was: NZ_VWAM01000077.1); NZ_VWAM01000078 (original name was: NZ_VWAM01000078.1); NZ_VWAM01000079 (original name was: NZ_VWAM01000079.1); NZ_VWAM01000007 (original name was: NZ_VWAM01000007.1); NZ_VWAM01000080 (original name was: NZ_VWAM01000080.1); NZ_VWAM01000081 (original name was: NZ_VWAM01000081.1); NZ_VWAM01000082 (original name was: NZ_VWAM01000082.1); NZ_VWAM01000083 (original name was: NZ_VWAM01000083.1); NZ_VWAM01000084 (original name was: NZ_VWAM01000084.1); NZ_VWAM01000085 (original name was: NZ_VWAM01000085.1); NZ_VWAM01000086 (original name was: NZ_VWAM01000086.1); NZ_VWAM01000087 (original name was: NZ_VWAM01000087.1); NZ_VWAM01000088 (original name was: NZ_VWAM01000088.1); NZ_VWAM01000089 (original name was: NZ_VWAM01000089.1); NZ_VWAM01000090 (original name was: NZ_VWAM01000090.1); NZ_VWAM01000091 (original name was: NZ_VWAM01000091.1); NZ_VWAM01000092 (original name was: NZ_VWAM01000092.1); NZ_VWAM01000093 (original name was: NZ_VWAM01000093.1); NZ_VWAM01000094 (original name was: NZ_VWAM01000094.1); NZ_VWAM01000095 (original name was: NZ_VWAM01000095.1); NZ_VWAM01000096 (original name was: NZ_VWAM01000096.1); NZ_VWAM01000097 (original name was: NZ_VWAM01000097.1); NZ_VWAM01000098 (original name was: NZ_VWAM01000098.1); NZ_VWAM01000099 (original name was: NZ_VWAM01000099.1); NZ_VWAM01000009 (original name was: NZ_VWAM01000009.1)

Compact view

c00026_NZ_VWAM.. - Region 1 - Rnf_complex

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Location: 16,507 - 41,675 nt. (total: 25,169 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

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c00039_NZ_VWAM.. - Region 1 - Pyruvate2acetate-formate

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Location: 1,374 - 24,346 nt. (total: 22,973 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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c00041_NZ_VWAM.. - Region 1 - TPP_AA_metabolism

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Location: 114,921 - 140,948 nt. (total: 26,028 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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No matches found.

c00046_NZ_VWAM.. - Region 1 - succinate2propionate

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Location: 1 - 22,796 nt. (total: 22,796 nt) Show pHMM detection rules used

Region on contig edge.

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

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c00048_NZ_VWAM.. - Region 1 - TPP_fatty_acids

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Location: 1 - 23,314 nt. (total: 23,314 nt) Show pHMM detection rules used

Region on contig edge.

TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))

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c00048_NZ_VWAM.. - Region 2 - porA

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Location: 26,800 - 40,795 nt. (total: 13,996 nt) Show pHMM detection rules used

Region on contig edge.

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

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c00055_NZ_VWAM.. - Region 1 - PFOR_II_pathway

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Location: 17,997 - 34,833 nt. (total: 16,837 nt) Show pHMM detection rules used

Region on contig edge.

PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

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c00063_NZ_VWAM.. - Region 1 - Fumarate2succinate

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Location: 233,661 - 247,549 nt. (total: 13,889 nt) Show pHMM detection rules used

Region on contig edge.

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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c00107_NZ_VWAM.. - Region 1 - NADH_dehydrogenase_I

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Location: 16,995 - 46,928 nt. (total: 29,934 nt) Show pHMM detection rules used

NADH_dehydrogenase_I: (Oxidored_q4 and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and NADHdh and Oxidored_q3 and Oxidored_q2 and minimum(4, [Fe-2S_thioredx, Fer2_4, Fer4_7, Molybdop_Fe4S4, Molydop_binding, NADH-G_4Fe-4S_3, NADH_4Fe-4S, Proton_antipo_M, Proton_antipo_N, SLBB]))

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