GCF_003470435.1_ASM347043v1_genomic - 8 region(s)

Identified primary metabolite regions

NZ_QRIH01000012 (original name was: NZ_QRIH01000012.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 4.1	succinate2propionate,Rnf_complex	E-MGC	22,514	66,678	Rnf complex C. sporogenes	RNF	100%

NZ_QRIH01000015 (original name was: NZ_QRIH01000015.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 7.1	TPP_AA_metabolism	Putative	30,833	59,090

NZ_QRIH01000021 (original name was: NZ_QRIH01000021.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 14.1	Flavoenzyme_sugar_catabolism	Putative	24,137	48,879

NZ_QRIH01000026 (original name was: NZ_QRIH01000026.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 19.1	Others_HGD_unassigned	Putative	3,518	27,774

NZ_QRIH01000031 (original name was: NZ_QRIH01000031.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 25.1	Flavoenzyme_sugar_catabolism	Putative	1	25,383

NZ_QRIH01000035 (original name was: NZ_QRIH01000035.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 29.1	PFOR_II_pathway	SCFA	1	13,938	PFOR II pathway B. thetaiotaomicron	PFORII	100%

NZ_QRIH01000005 (original name was: NZ_QRIH01000005.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 45.1	Pyruvate2acetate-formate	SCFA	72,337	95,548	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

NZ_QRIH01000006 (original name was: NZ_QRIH01000006.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 56.1	Rnf_complex	E-MGC	54,637	81,235	Acetyl-CoA pathway B. hydrogenotrophica	Acetate	19%

No primary metabolite regions were found in these records:: NZ_QRIH01000001 (original name was: NZ_QRIH01000001.1); NZ_QRIH01000010 (original name was: NZ_QRIH01000010.1); NZ_QRIH01000011 (original name was: NZ_QRIH01000011.1); NZ_QRIH01000013 (original name was: NZ_QRIH01000013.1); NZ_QRIH01000014 (original name was: NZ_QRIH01000014.1); NZ_QRIH01000016 (original name was: NZ_QRIH01000016.1); NZ_QRIH01000017 (original name was: NZ_QRIH01000017.1); NZ_QRIH01000018 (original name was: NZ_QRIH01000018.1); NZ_QRIH01000019 (original name was: NZ_QRIH01000019.1); NZ_QRIH01000002 (original name was: NZ_QRIH01000002.1); NZ_QRIH01000020 (original name was: NZ_QRIH01000020.1); NZ_QRIH01000022 (original name was: NZ_QRIH01000022.1); NZ_QRIH01000023 (original name was: NZ_QRIH01000023.1); NZ_QRIH01000024 (original name was: NZ_QRIH01000024.1); NZ_QRIH01000025 (original name was: NZ_QRIH01000025.1); NZ_QRIH01000027 (original name was: NZ_QRIH01000027.1); NZ_QRIH01000028 (original name was: NZ_QRIH01000028.1); NZ_QRIH01000029 (original name was: NZ_QRIH01000029.1); NZ_QRIH01000003 (original name was: NZ_QRIH01000003.1); NZ_QRIH01000030 (original name was: NZ_QRIH01000030.1); NZ_QRIH01000032 (original name was: NZ_QRIH01000032.1); NZ_QRIH01000033 (original name was: NZ_QRIH01000033.1); NZ_QRIH01000034 (original name was: NZ_QRIH01000034.1); NZ_QRIH01000036 (original name was: NZ_QRIH01000036.1); NZ_QRIH01000037 (original name was: NZ_QRIH01000037.1); NZ_QRIH01000038 (original name was: NZ_QRIH01000038.1); NZ_QRIH01000039 (original name was: NZ_QRIH01000039.1); NZ_QRIH01000004 (original name was: NZ_QRIH01000004.1); NZ_QRIH01000040 (original name was: NZ_QRIH01000040.1); NZ_QRIH01000041 (original name was: NZ_QRIH01000041.1); NZ_QRIH01000042 (original name was: NZ_QRIH01000042.1); NZ_QRIH01000043 (original name was: NZ_QRIH01000043.1); NZ_QRIH01000044 (original name was: NZ_QRIH01000044.1); NZ_QRIH01000045 (original name was: NZ_QRIH01000045.1); NZ_QRIH01000046 (original name was: NZ_QRIH01000046.1); NZ_QRIH01000047 (original name was: NZ_QRIH01000047.1); NZ_QRIH01000048 (original name was: NZ_QRIH01000048.1); NZ_QRIH01000049 (original name was: NZ_QRIH01000049.1); NZ_QRIH01000050 (original name was: NZ_QRIH01000050.1); NZ_QRIH01000051 (original name was: NZ_QRIH01000051.1); NZ_QRIH01000052 (original name was: NZ_QRIH01000052.1); NZ_QRIH01000053 (original name was: NZ_QRIH01000053.1); NZ_QRIH01000054 (original name was: NZ_QRIH01000054.1); NZ_QRIH01000055 (original name was: NZ_QRIH01000055.1); NZ_QRIH01000056 (original name was: NZ_QRIH01000056.1); NZ_QRIH01000057 (original name was: NZ_QRIH01000057.1); NZ_QRIH01000058 (original name was: NZ_QRIH01000058.1); NZ_QRIH01000059 (original name was: NZ_QRIH01000059.1); NZ_QRIH01000060 (original name was: NZ_QRIH01000060.1); NZ_QRIH01000061 (original name was: NZ_QRIH01000061.1); NZ_QRIH01000062 (original name was: NZ_QRIH01000062.1); NZ_QRIH01000063 (original name was: NZ_QRIH01000063.1); NZ_QRIH01000064 (original name was: NZ_QRIH01000064.1); NZ_QRIH01000065 (original name was: NZ_QRIH01000065.1); NZ_QRIH01000066 (original name was: NZ_QRIH01000066.1); NZ_QRIH01000067 (original name was: NZ_QRIH01000067.1); NZ_QRIH01000068 (original name was: NZ_QRIH01000068.1); NZ_QRIH01000069 (original name was: NZ_QRIH01000069.1); NZ_QRIH01000007 (original name was: NZ_QRIH01000007.1); NZ_QRIH01000070 (original name was: NZ_QRIH01000070.1); NZ_QRIH01000071 (original name was: NZ_QRIH01000071.1); NZ_QRIH01000072 (original name was: NZ_QRIH01000072.1); NZ_QRIH01000008 (original name was: NZ_QRIH01000008.1); NZ_QRIH01000009 (original name was: NZ_QRIH01000009.1)

Compact view

c00004_NZ_QRIH.. - Region 1 - Rnf_complex,succinate2propionate

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Location: 22,514 - 66,678 nt. (total: 44,165 nt) Show pHMM detection rules used

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)
Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

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c00007_NZ_QRIH.. - Region 1 - TPP_AA_metabolism

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Location: 30,833 - 59,090 nt. (total: 28,258 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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c00014_NZ_QRIH.. - Region 1 - Flavoenzyme_sugar_catabolism

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Location: 24,137 - 48,879 nt. (total: 24,743 nt) Show pHMM detection rules used

Flavoenzyme_sugar_catabolism: ((cds(Pyr_redox_2 and Oxidored_FMN) or baiCD or baiH) and minimum(2, [Alpha-amylase, Glyco_hydro_1, Glyco_hydro_25, Glyco_hydro_36, Glycos_transf_3, PTS_EIIC, Polysacc_deac_1]))

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c00019_NZ_QRIH.. - Region 1 - Others_HGD_unassigned

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Location: 3,518 - 27,774 nt. (total: 24,257 nt) Show pHMM detection rules used

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

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c00025_NZ_QRIH.. - Region 1 - Flavoenzyme_sugar_catabolism

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Location: 1 - 25,383 nt. (total: 25,383 nt) Show pHMM detection rules used

Region on contig edge.

Flavoenzyme_sugar_catabolism: ((cds(Pyr_redox_2 and Oxidored_FMN) or baiCD or baiH) and minimum(2, [Alpha-amylase, Glyco_hydro_1, Glyco_hydro_25, Glyco_hydro_36, Glycos_transf_3, PTS_EIIC, Polysacc_deac_1]))

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c00029_NZ_QRIH.. - Region 1 - PFOR_II_pathway

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Location: 1 - 13,938 nt. (total: 13,938 nt) Show pHMM detection rules used

Region on contig edge.

PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

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c00045_NZ_QRIH.. - Region 1 - Pyruvate2acetate-formate

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Location: 72,337 - 95,548 nt. (total: 23,212 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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c00056_NZ_QRIH.. - Region 1 - Rnf_complex

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Location: 54,637 - 81,235 nt. (total: 26,599 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

Legend:

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