GCF_015558405.1_ASM1555840v1_genomic - 9 region(s)

Identified primary metabolite regions

c00001_NZ_JADM.. (original name was: NZ_JADMNV010000010.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 1.1	Fumarate2succinate	SCFA	40,095	63,510	Fumarate to succinate B. thetaiotaomicron	SUC	100%

c00007_NZ_JADM.. (original name was: NZ_JADMNV010000016.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 7.1	porA	SCFA	5,906	28,552	porA C. sporogenes	POR	60%

c00017_NZ_JADM.. (original name was: NZ_JADMNV010000025.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 17.1	Pyruvate2acetate-formate	SCFA	6,581	27,199	Pyruvate to acetate-formate B. thetaiotaomicron	PFL_acetate	100%

c00022_NZ_JADM.. (original name was: NZ_JADMNV010000002.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 22.1	TPP_AA_metabolism	Putative	388,145	416,477

c00044_NZ_JADM.. (original name was: NZ_JADMNV010000004.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 44.1	OD_fatty_acids	Putative	102,516	127,315

c00052_NZ_JADM.. (original name was: NZ_JADMNV010000006.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 52.1	Rnf_complex	E-MGC	58,031	83,358	Rnf complex C. sporogenes	RNF	100%

c00053_NZ_JADM.. (original name was: NZ_JADMNV010000007.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 53.1	Putrescine2spermidine	Aliphatic_amine	63,131	86,432	Arginine2putrescine R. gnavus	PUTR	40%
Region 53.2	succinate2propionate	SCFA	151,557	169,838	Succinate to propionate A. sp. KLE1797	SUC	57%

c00055_NZ_JADM.. (original name was: NZ_JADMNV010000009.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 55.1	NADH_dehydrogenase_I	E-MGC	86,297	116,292	NADH dehydrogenase I Bacteroides sp.	NADHD	47%

No primary metabolite regions were found in these records:: c00002_NZ_JADM.. (original name was: NZ_JADMNV010000011.1); c00003_NZ_JADM.. (original name was: NZ_JADMNV010000012.1); c00004_NZ_JADM.. (original name was: NZ_JADMNV010000013.1); c00005_NZ_JADM.. (original name was: NZ_JADMNV010000014.1); c00006_NZ_JADM.. (original name was: NZ_JADMNV010000015.1); c00008_NZ_JADM.. (original name was: NZ_JADMNV010000017.1); c00009_NZ_JADM.. (original name was: NZ_JADMNV010000018.1); c00010_NZ_JADM.. (original name was: NZ_JADMNV010000019.1); c00011_NZ_JADM.. (original name was: NZ_JADMNV010000001.1); c00012_NZ_JADM.. (original name was: NZ_JADMNV010000020.1); c00013_NZ_JADM.. (original name was: NZ_JADMNV010000021.1); c00014_NZ_JADM.. (original name was: NZ_JADMNV010000022.1); c00015_NZ_JADM.. (original name was: NZ_JADMNV010000023.1); c00016_NZ_JADM.. (original name was: NZ_JADMNV010000024.1); c00018_NZ_JADM.. (original name was: NZ_JADMNV010000026.1); c00019_NZ_JADM.. (original name was: NZ_JADMNV010000027.1); c00020_NZ_JADM.. (original name was: NZ_JADMNV010000028.1); c00021_NZ_JADM.. (original name was: NZ_JADMNV010000029.1); c00023_NZ_JADM.. (original name was: NZ_JADMNV010000030.1); c00024_NZ_JADM.. (original name was: NZ_JADMNV010000031.1); c00025_NZ_JADM.. (original name was: NZ_JADMNV010000032.1); c00026_NZ_JADM.. (original name was: NZ_JADMNV010000033.1); c00027_NZ_JADM.. (original name was: NZ_JADMNV010000034.1); c00028_NZ_JADM.. (original name was: NZ_JADMNV010000035.1); c00029_NZ_JADM.. (original name was: NZ_JADMNV010000036.1); c00030_NZ_JADM.. (original name was: NZ_JADMNV010000037.1); c00031_NZ_JADM.. (original name was: NZ_JADMNV010000038.1); c00032_NZ_JADM.. (original name was: NZ_JADMNV010000039.1); c00033_NZ_JADM.. (original name was: NZ_JADMNV010000003.1); c00034_NZ_JADM.. (original name was: NZ_JADMNV010000040.1); c00035_NZ_JADM.. (original name was: NZ_JADMNV010000041.1); c00036_NZ_JADM.. (original name was: NZ_JADMNV010000042.1); c00037_NZ_JADM.. (original name was: NZ_JADMNV010000043.1); c00038_NZ_JADM.. (original name was: NZ_JADMNV010000044.1); c00039_NZ_JADM.. (original name was: NZ_JADMNV010000045.1); c00040_NZ_JADM.. (original name was: NZ_JADMNV010000046.1); c00041_NZ_JADM.. (original name was: NZ_JADMNV010000047.1); c00042_NZ_JADM.. (original name was: NZ_JADMNV010000048.1); c00043_NZ_JADM.. (original name was: NZ_JADMNV010000049.1); c00045_NZ_JADM.. (original name was: NZ_JADMNV010000050.1); c00046_NZ_JADM.. (original name was: NZ_JADMNV010000051.1); c00047_NZ_JADM.. (original name was: NZ_JADMNV010000052.1); c00048_NZ_JADM.. (original name was: NZ_JADMNV010000053.1); c00049_NZ_JADM.. (original name was: NZ_JADMNV010000054.1); c00050_NZ_JADM.. (original name was: NZ_JADMNV010000055.1); c00051_NZ_JADM.. (original name was: NZ_JADMNV010000005.1); c00054_NZ_JADM.. (original name was: NZ_JADMNV010000008.1)

Compact view

c00001_NZ_JADM.. - Region 1 - Fumarate2succinate

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Location: 40,095 - 63,510 nt. (total: 23,416 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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c00007_NZ_JADM.. - Region 1 - porA

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Location: 5,906 - 28,552 nt. (total: 22,647 nt) Show pHMM detection rules used

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

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c00017_NZ_JADM.. - Region 1 - Pyruvate2acetate-formate

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Location: 6,581 - 27,199 nt. (total: 20,619 nt) Show pHMM detection rules used

Region on contig edge.

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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c00022_NZ_JADM.. - Region 1 - TPP_AA_metabolism

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Location: 388,145 - 416,477 nt. (total: 28,333 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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No matches found.

c00044_NZ_JADM.. - Region 1 - OD_fatty_acids

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Location: 102,516 - 127,315 nt. (total: 24,800 nt) Show pHMM detection rules used

OD_fatty_acids: (minimum(1, [PFOR_II, POR, POR_N]) and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (Gly_radical_scatole or Gly_radical or Gly_430_pcre or Gly_8-9_TMA))

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c00052_NZ_JADM.. - Region 1 - Rnf_complex

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Location: 58,031 - 83,358 nt. (total: 25,328 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

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c00053_NZ_JADM.. - Region 1 - Putrescine2spermidine

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Location: 63,131 - 86,432 nt. (total: 23,302 nt) Show pHMM detection rules used

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

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c00053_NZ_JADM.. - Region 2 - succinate2propionate

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Location: 151,557 - 169,838 nt. (total: 18,282 nt) Show pHMM detection rules used

Region on contig edge.

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

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c00055_NZ_JADM.. - Region 1 - NADH_dehydrogenase_I

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Location: 86,297 - 116,292 nt. (total: 29,996 nt) Show pHMM detection rules used

NADH_dehydrogenase_I: (Oxidored_q4 and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and NADHdh and Oxidored_q3 and Oxidored_q2 and minimum(4, [Fe-2S_thioredx, Fer2_4, Fer4_7, Molybdop_Fe4S4, Molydop_binding, NADH-G_4Fe-4S_3, NADH_4Fe-4S, Proton_antipo_M, Proton_antipo_N, SLBB]))

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