GCF_020172065.1_ASM2017206v1_genomic - 5 region(s)

Identified primary metabolite regions

c00001_NZ_JAIV.. (original name was: NZ_JAIVAO010000001.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 1.1	Putrescine2spermidine,acetate2butyrate	SCFA	327,961	362,761	Acetate to butyrate C. sporogenes	BUT	50%
Region 1.2	NADH_dehydrogenase_I	E-MGC	389,541	420,432	NADH dehydrogenase I Bacteroides sp.	NADHD	33%

c00007_NZ_JAIV.. (original name was: NZ_JAIVAO010000007.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 7.1	succinate2propionate	SCFA	80,495	104,954	Succinate to propionate V. parvulla	PRO	66%

c00008_NZ_JAIV.. (original name was: NZ_JAIVAO010000008.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 8.1	TPP_AA_metabolism,Fumarate2succinate	SCFA	288,981	325,539	Acetate to butyrate C. sporogenes	BUT	50%

c00009_NZ_JAIV.. (original name was: NZ_JAIVAO010000009.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 9.1	fatty_acids-unassigned	Putative	209,188	232,093	Acetate to butyrate C. sporogenes	BUT	33%

No primary metabolite regions were found in these records:: c00002_NZ_JAIV.. (original name was: NZ_JAIVAO010000002.1); c00003_NZ_JAIV.. (original name was: NZ_JAIVAO010000003.1); c00004_NZ_JAIV.. (original name was: NZ_JAIVAO010000004.1); c00005_NZ_JAIV.. (original name was: NZ_JAIVAO010000005.1); c00006_NZ_JAIV.. (original name was: NZ_JAIVAO010000006.1); c00010_NZ_JAIV.. (original name was: NZ_JAIVAO010000011.1); c00011_NZ_JAIV.. (original name was: NZ_JAIVAO010000012.1); c00012_NZ_JAIV.. (original name was: NZ_JAIVAO010000013.1); c00013_NZ_JAIV.. (original name was: NZ_JAIVAO010000014.1); c00014_NZ_JAIV.. (original name was: NZ_JAIVAO010000015.1); c00015_NZ_JAIV.. (original name was: NZ_JAIVAO010000016.1); c00016_NZ_JAIV.. (original name was: NZ_JAIVAO010000017.1); c00017_NZ_JAIV.. (original name was: NZ_JAIVAO010000018.1); c00018_NZ_JAIV.. (original name was: NZ_JAIVAO010000019.1); c00019_NZ_JAIV.. (original name was: NZ_JAIVAO010000020.1); c00020_NZ_JAIV.. (original name was: NZ_JAIVAO010000021.1); c00021_NZ_JAIV.. (original name was: NZ_JAIVAO010000022.1); c00022_NZ_JAIV.. (original name was: NZ_JAIVAO010000023.1); c00023_NZ_JAIV.. (original name was: NZ_JAIVAO010000024.1); c00024_NZ_JAIV.. (original name was: NZ_JAIVAO010000025.1); c00025_NZ_JAIV.. (original name was: NZ_JAIVAO010000026.1)

Compact view

c00001_NZ_JAIV.. - Region 1 - Putrescine2spermidine,acetate2butyrate

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Location: 327,961 - 362,761 nt. (total: 34,801 nt) Show pHMM detection rules used

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))
acetate2butyrate: (not (POR or POR_N or PFOR_II) and minimum(4, [Acyl-CoA_dh_1, Acyl-CoA_dh_2, ECH_2, ETF, ETF_alpha, HCDH_N, Thiolase_N, ketoacyl-synt]) and HCDH and minimum(1, [EC1_2-faecali, ECH1_Enoyl_CoA_DH1, ECH1_Enoyl_CoA_DH2, ECH1_Enoyl_CoA_DH3, ECH1_Enoyl_CoA_DH4, Thiolase_C]))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

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c00001_NZ_JAIV.. - Region 2 - NADH_dehydrogenase_I

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Location: 389,541 - 420,432 nt. (total: 30,892 nt) Show pHMM detection rules used

NADH_dehydrogenase_I: (Oxidored_q4 and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and NADHdh and Oxidored_q3 and Oxidored_q2 and minimum(4, [Fe-2S_thioredx, Fer2_4, Fer4_7, Molybdop_Fe4S4, Molydop_binding, NADH-G_4Fe-4S_3, NADH_4Fe-4S, Proton_antipo_M, Proton_antipo_N, SLBB]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

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c00007_NZ_JAIV.. - Region 1 - succinate2propionate

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Location: 80,495 - 104,954 nt. (total: 24,460 nt) Show pHMM detection rules used

Region on contig edge.

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Similar known gene clusters

c00008_NZ_JAIV.. - Region 1 - Fumarate2succinate,TPP_AA_metabolism

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Location: 288,981 - 325,539 nt. (total: 36,559 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))
Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00009_NZ_JAIV.. - Region 1 - fatty_acids-unassigned

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Location: 209,188 - 232,093 nt. (total: 22,906 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters