GCF_001571065.1_ASM157106v1_genomic - 10 region(s)

Identified primary metabolite regions

NZ_BCSW01000001 (original name was: NZ_BCSW01000001.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 1.1	fatty_acids-unassigned	Putative	7,027	54,853
Region 1.2	OD_fatty_acids	Putative	157,637	190,530

NZ_BCSW01000002 (original name was: NZ_BCSW01000002.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 2.1	fatty_acids-unassigned	Putative	1	27,274	Acetate to butyrate C. sporogenes	BUT	33%

NZ_BCSW01000003 (original name was: NZ_BCSW01000003.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 3.1	Fumarate2succinate	SCFA	101,580	124,296	Fumarate to succinate B. thetaiotaomicron	SUC	66%

NZ_BCSW01000004 (original name was: NZ_BCSW01000004.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 4.1	Nitrate_reductase	E-MGC	10,658	37,562	Nitrate reductase E. coli	NIR	40%

NZ_BCSW01000006 (original name was: NZ_BCSW01000006.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 6.1	Fumarate2succinate	SCFA	79,657	102,220	Fumarate2succinate suc dh E. coli	SUC	100%

NZ_BCSW01000009 (original name was: NZ_BCSW01000009.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 9.1	fatty_acids-unassigned	Putative	379	34,847

NZ_BCSW01000023 (original name was: NZ_BCSW01000023.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 23.1	OD_fatty_acids,OD_AA_metabolism,OD_unknown	Putative	8,195	51,285	Aromatic amino acid reductive branch C. sporogenes	AAA	16%

NZ_BCSW01000045 (original name was: NZ_BCSW01000045.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 45.1	Molybdopterin_dependent_oxidoreductase	E-MGC	1	15,903	Formate dehydrogenase E. coli	FORM	66%

NZ_BCSW01000049 (original name was: NZ_BCSW01000049.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 49.1	TPP_AA_metabolism	Putative	1	19,627

Region	Type	Class	From	To	Most similar known cluster	Similarity
Region 1.1	fatty_acids-unassigned	Putative	7,027	54,853
Region 1.2	OD_fatty_acids	Putative	157,637	190,530
Region 2.1	fatty_acids-unassigned	Putative	1	27,274	Acetate to butyrate C. sporogenes	BUT	33%
Region 3.1	Fumarate2succinate	SCFA	101,580	124,296	Fumarate to succinate B. thetaiotaomicron	SUC	66%
Region 4.1	Nitrate_reductase	E-MGC	10,658	37,562	Nitrate reductase E. coli	NIR	40%
Region 6.1	Fumarate2succinate	SCFA	79,657	102,220	Fumarate2succinate suc dh E. coli	SUC	100%
Region 9.1	fatty_acids-unassigned	Putative	379	34,847
Region 23.1	OD_fatty_acids,OD_AA_metabolism,OD_unknown	Putative	8,195	51,285	Aromatic amino acid reductive branch C. sporogenes	AAA	16%
Region 45.1	Molybdopterin_dependent_oxidoreductase	E-MGC	1	15,903	Formate dehydrogenase E. coli	FORM	66%
Region 49.1	TPP_AA_metabolism	Putative	1	19,627

No primary metabolite regions were found in these records:: NZ_BCSW01000005 (original name was: NZ_BCSW01000005.1); NZ_BCSW01000007 (original name was: NZ_BCSW01000007.1); NZ_BCSW01000008 (original name was: NZ_BCSW01000008.1); NZ_BCSW01000010 (original name was: NZ_BCSW01000010.1); NZ_BCSW01000011 (original name was: NZ_BCSW01000011.1); NZ_BCSW01000012 (original name was: NZ_BCSW01000012.1); NZ_BCSW01000013 (original name was: NZ_BCSW01000013.1); NZ_BCSW01000014 (original name was: NZ_BCSW01000014.1); NZ_BCSW01000015 (original name was: NZ_BCSW01000015.1); NZ_BCSW01000016 (original name was: NZ_BCSW01000016.1); NZ_BCSW01000017 (original name was: NZ_BCSW01000017.1); NZ_BCSW01000018 (original name was: NZ_BCSW01000018.1); NZ_BCSW01000019 (original name was: NZ_BCSW01000019.1); NZ_BCSW01000020 (original name was: NZ_BCSW01000020.1); NZ_BCSW01000021 (original name was: NZ_BCSW01000021.1); NZ_BCSW01000022 (original name was: NZ_BCSW01000022.1); NZ_BCSW01000024 (original name was: NZ_BCSW01000024.1); NZ_BCSW01000025 (original name was: NZ_BCSW01000025.1); NZ_BCSW01000026 (original name was: NZ_BCSW01000026.1); NZ_BCSW01000027 (original name was: NZ_BCSW01000027.1); NZ_BCSW01000028 (original name was: NZ_BCSW01000028.1); NZ_BCSW01000029 (original name was: NZ_BCSW01000029.1); NZ_BCSW01000030 (original name was: NZ_BCSW01000030.1); NZ_BCSW01000031 (original name was: NZ_BCSW01000031.1); NZ_BCSW01000032 (original name was: NZ_BCSW01000032.1); NZ_BCSW01000033 (original name was: NZ_BCSW01000033.1); NZ_BCSW01000034 (original name was: NZ_BCSW01000034.1); NZ_BCSW01000035 (original name was: NZ_BCSW01000035.1); NZ_BCSW01000036 (original name was: NZ_BCSW01000036.1); NZ_BCSW01000037 (original name was: NZ_BCSW01000037.1); NZ_BCSW01000038 (original name was: NZ_BCSW01000038.1); NZ_BCSW01000039 (original name was: NZ_BCSW01000039.1); NZ_BCSW01000040 (original name was: NZ_BCSW01000040.1); NZ_BCSW01000041 (original name was: NZ_BCSW01000041.1); NZ_BCSW01000042 (original name was: NZ_BCSW01000042.1); NZ_BCSW01000043 (original name was: NZ_BCSW01000043.1); NZ_BCSW01000044 (original name was: NZ_BCSW01000044.1); NZ_BCSW01000046 (original name was: NZ_BCSW01000046.1); NZ_BCSW01000047 (original name was: NZ_BCSW01000047.1); NZ_BCSW01000048 (original name was: NZ_BCSW01000048.1); NZ_BCSW01000050 (original name was: NZ_BCSW01000050.1); NZ_BCSW01000051 (original name was: NZ_BCSW01000051.1); NZ_BCSW01000052 (original name was: NZ_BCSW01000052.1); NZ_BCSW01000053 (original name was: NZ_BCSW01000053.1); NZ_BCSW01000054 (original name was: NZ_BCSW01000054.1); NZ_BCSW01000055 (original name was: NZ_BCSW01000055.1); NZ_BCSW01000056 (original name was: NZ_BCSW01000056.1); NZ_BCSW01000057 (original name was: NZ_BCSW01000057.1); NZ_BCSW01000058 (original name was: NZ_BCSW01000058.1); NZ_BCSW01000059 (original name was: NZ_BCSW01000059.1); NZ_BCSW01000060 (original name was: NZ_BCSW01000060.1); NZ_BCSW01000061 (original name was: NZ_BCSW01000061.1); NZ_BCSW01000062 (original name was: NZ_BCSW01000062.1); NZ_BCSW01000063 (original name was: NZ_BCSW01000063.1); NZ_BCSW01000064 (original name was: NZ_BCSW01000064.1); NZ_BCSW01000065 (original name was: NZ_BCSW01000065.1); NZ_BCSW01000066 (original name was: NZ_BCSW01000066.1); NZ_BCSW01000067 (original name was: NZ_BCSW01000067.1); NZ_BCSW01000068 (original name was: NZ_BCSW01000068.1); NZ_BCSW01000069 (original name was: NZ_BCSW01000069.1); NZ_BCSW01000070 (original name was: NZ_BCSW01000070.1); NZ_BCSW01000071 (original name was: NZ_BCSW01000071.1); NZ_BCSW01000072 (original name was: NZ_BCSW01000072.1); NZ_BCSW01000073 (original name was: NZ_BCSW01000073.1); NZ_BCSW01000074 (original name was: NZ_BCSW01000074.1); NZ_BCSW01000075 (original name was: NZ_BCSW01000075.1); NZ_BCSW01000076 (original name was: NZ_BCSW01000076.1); NZ_BCSW01000077 (original name was: NZ_BCSW01000077.1); NZ_BCSW01000078 (original name was: NZ_BCSW01000078.1); NZ_BCSW01000079 (original name was: NZ_BCSW01000079.1); NZ_BCSW01000080 (original name was: NZ_BCSW01000080.1); NZ_BCSW01000081 (original name was: NZ_BCSW01000081.1); NZ_BCSW01000082 (original name was: NZ_BCSW01000082.1); NZ_BCSW01000083 (original name was: NZ_BCSW01000083.1); NZ_BCSW01000084 (original name was: NZ_BCSW01000084.1); NZ_BCSW01000085 (original name was: NZ_BCSW01000085.1); NZ_BCSW01000086 (original name was: NZ_BCSW01000086.1); NZ_BCSW01000087 (original name was: NZ_BCSW01000087.1); NZ_BCSW01000088 (original name was: NZ_BCSW01000088.1); NZ_BCSW01000089 (original name was: NZ_BCSW01000089.1); NZ_BCSW01000090 (original name was: NZ_BCSW01000090.1); NZ_BCSW01000091 (original name was: NZ_BCSW01000091.1); NZ_BCSW01000092 (original name was: NZ_BCSW01000092.1); NZ_BCSW01000093 (original name was: NZ_BCSW01000093.1); NZ_BCSW01000094 (original name was: NZ_BCSW01000094.1); NZ_BCSW01000095 (original name was: NZ_BCSW01000095.1); NZ_BCSW01000096 (original name was: NZ_BCSW01000096.1); NZ_BCSW01000097 (original name was: NZ_BCSW01000097.1); NZ_BCSW01000098 (original name was: NZ_BCSW01000098.1); NZ_BCSW01000099 (original name was: NZ_BCSW01000099.1); NZ_BCSW01000100 (original name was: NZ_BCSW01000100.1); NZ_BCSW01000101 (original name was: NZ_BCSW01000101.1); NZ_BCSW01000102 (original name was: NZ_BCSW01000102.1); NZ_BCSW01000103 (original name was: NZ_BCSW01000103.1); NZ_BCSW01000104 (original name was: NZ_BCSW01000104.1); NZ_BCSW01000105 (original name was: NZ_BCSW01000105.1); NZ_BCSW01000106 (original name was: NZ_BCSW01000106.1); NZ_BCSW01000107 (original name was: NZ_BCSW01000107.1); NZ_BCSW01000108 (original name was: NZ_BCSW01000108.1); NZ_BCSW01000109 (original name was: NZ_BCSW01000109.1); NZ_BCSW01000110 (original name was: NZ_BCSW01000110.1); NZ_BCSW01000111 (original name was: NZ_BCSW01000111.1); NZ_BCSW01000112 (original name was: NZ_BCSW01000112.1); NZ_BCSW01000113 (original name was: NZ_BCSW01000113.1); NZ_BCSW01000114 (original name was: NZ_BCSW01000114.1); NZ_BCSW01000115 (original name was: NZ_BCSW01000115.1); NZ_BCSW01000116 (original name was: NZ_BCSW01000116.1); NZ_BCSW01000117 (original name was: NZ_BCSW01000117.1); NZ_BCSW01000118 (original name was: NZ_BCSW01000118.1); NZ_BCSW01000119 (original name was: NZ_BCSW01000119.1); NZ_BCSW01000120 (original name was: NZ_BCSW01000120.1); NZ_BCSW01000121 (original name was: NZ_BCSW01000121.1); NZ_BCSW01000122 (original name was: NZ_BCSW01000122.1); NZ_BCSW01000123 (original name was: NZ_BCSW01000123.1); NZ_BCSW01000124 (original name was: NZ_BCSW01000124.1); NZ_BCSW01000125 (original name was: NZ_BCSW01000125.1); NZ_BCSW01000126 (original name was: NZ_BCSW01000126.1); NZ_BCSW01000127 (original name was: NZ_BCSW01000127.1); NZ_BCSW01000128 (original name was: NZ_BCSW01000128.1); NZ_BCSW01000129 (original name was: NZ_BCSW01000129.1); NZ_BCSW01000130 (original name was: NZ_BCSW01000130.1); NZ_BCSW01000131 (original name was: NZ_BCSW01000131.1); NZ_BCSW01000132 (original name was: NZ_BCSW01000132.1); NZ_BCSW01000133 (original name was: NZ_BCSW01000133.1); NZ_BCSW01000134 (original name was: NZ_BCSW01000134.1); NZ_BCSW01000135 (original name was: NZ_BCSW01000135.1); NZ_BCSW01000136 (original name was: NZ_BCSW01000136.1); NZ_BCSW01000137 (original name was: NZ_BCSW01000137.1)

Compact view

c00001_NZ_BCSW.. - Region 1 - fatty_acids-unassigned

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Location: 7,027 - 54,853 nt. (total: 47,827 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

TTA codons

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00001_NZ_BCSW.. - Region 2 - OD_fatty_acids

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Location: 157,637 - 190,530 nt. (total: 32,894 nt) Show pHMM detection rules used

OD_fatty_acids: (minimum(1, [PFOR_II, POR, POR_N]) and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (Gly_radical_scatole or Gly_radical or Gly_430_pcre or Gly_8-9_TMA))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

TTA codons

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00002_NZ_BCSW.. - Region 1 - fatty_acids-unassigned

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Location: 1 - 27,274 nt. (total: 27,274 nt) Show pHMM detection rules used

Region on contig edge.

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

TTA codons

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00003_NZ_BCSW.. - Region 1 - Fumarate2succinate

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Location: 101,580 - 124,296 nt. (total: 22,717 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

TTA codons

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00004_NZ_BCSW.. - Region 1 - Nitrate_reductase

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Location: 10,658 - 37,562 nt. (total: 26,905 nt) Show pHMM detection rules used

Nitrate_reductase: (Nitr_red_bet_C and Nitrate_red_del and Nitrate_red_gam and Molybdopterin and minimum(2, [Fer4_11, Molybdopterin, Molydop_binding, Nitr_red_alph_N]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

TTA codons

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00006_NZ_BCSW.. - Region 1 - Fumarate2succinate

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Location: 79,657 - 102,220 nt. (total: 22,564 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

TTA codons

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Gene details

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c00009_NZ_BCSW.. - Region 1 - fatty_acids-unassigned

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Location: 379 - 34,847 nt. (total: 34,469 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

TTA codons

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00023_NZ_BCSW.. - Region 1 - OD_AA_metabolism,OD_fatty_acids,OD_unknown

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Location: 8,195 - 51,285 nt. (total: 43,091 nt) Show pHMM detection rules used

Region on contig edge.

OD_fatty_acids: (minimum(1, [PFOR_II, POR, POR_N]) and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (Gly_radical_scatole or Gly_radical or Gly_430_pcre or Gly_8-9_TMA))
OD_AA_metabolism: (minimum(1, [PFOR_II, POR, POR_N]) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (Gly_radical_scatole or Gly_radical or Gly_430_pcre or Gly_8-9_TMA))
OD_unknown: (minimum(1, [PFOR_II, POR, POR_N]) and minimum(2, [CoA_binding, CoA_binding_2, Ligase_CoA, PTAC, Succ_CoA_lig]) and not (Gly_radical_scatole or Gly_radical or Gly_430_pcre or Gly_8-9_TMA))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

TTA codons

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00045_NZ_BCSW.. - Region 1 - Molybdopterin_dependent_oxidoreductase

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Location: 1 - 15,903 nt. (total: 15,903 nt) Show pHMM detection rules used

Region on contig edge.

Molybdopterin_dependent_oxidoreductase: ((DmsC and Molybdopterin and minimum(2, [Fer4_11, Fer4_4, Molybdop_Fe4S4, Molydop_binding])) or (NrfD and Molybdopterin and minimum(2, [Fer4_11, Molybdop_Fe4S4, Molydop_binding]) and not (Nitr_red_bet_C or Nitrate_red_del)))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

TTA codons

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

c00049_NZ_BCSW.. - Region 1 - TPP_AA_metabolism

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Location: 1 - 19,627 nt. (total: 19,627 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

TTA codons

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.