GCF_027688575.1_ASM2768857v1_genomic - 10 region(s)

Identified primary metabolite regions

c00011_NZ_JAQC.. (original name was: NZ_JAQCOQ010000011.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 11.1	Rnf_complex	E-MGC	9,132	34,352	Rnf complex C. sporogenes	RNF	66%

c00014_NZ_JAQC.. (original name was: NZ_JAQCOQ010000014.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 14.1	NADH_dehydrogenase_I	E-MGC	28,832	58,720	NADH dehydrogenase I Bacteroides sp.	NADHD	57%

c00023_NZ_JAQC.. (original name was: NZ_JAQCOQ010000023.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 23.1	TPP_AA_metabolism	Putative	34,248	52,186

c00025_NZ_JAQC.. (original name was: NZ_JAQCOQ010000025.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 25.1	PFOR_II_pathway	SCFA	1	17,073	PFOR II pathway B. thetaiotaomicron	PFORII	100%

c00034_NZ_JAQC.. (original name was: NZ_JAQCOQ010000034.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 34.1	TPP_fatty_acids	Putative	1	16,200

c00037_NZ_JAQC.. (original name was: NZ_JAQCOQ010000037.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 37.1	succinate2propionate	SCFA	5,877	33,894	Succinate to propionate V. parvulla	PRO	33%

c00055_NZ_JAQC.. (original name was: NZ_JAQCOQ010000055.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 55.1	succinate2propionate	SCFA	1	21,289	Succinate to propionate B. theta	PRO	50%

c00057_NZ_JAQC.. (original name was: NZ_JAQCOQ010000057.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 57.1	porA	SCFA	947	23,834	porA C. sporogenes	POR	60%

c00074_NZ_JAQC.. (original name was: NZ_JAQCOQ010000074.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 74.1	Fumarate2succinate	SCFA	1	18,512	Fumarate to succinate B. thetaiotaomicron	SUC	100%

c00087_NZ_JAQC.. (original name was: NZ_JAQCOQ010000087.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 87.1	Pyruvate2acetate-formate	SCFA	1	15,433	Pyruvate to acetate-formate B. thetaiotaomicron	PFL_acetate	100%

No primary metabolite regions were found in these records:: c00001_NZ_JAQC.. (original name was: NZ_JAQCOQ010000001.1); c00002_NZ_JAQC.. (original name was: NZ_JAQCOQ010000002.1); c00003_NZ_JAQC.. (original name was: NZ_JAQCOQ010000003.1); c00004_NZ_JAQC.. (original name was: NZ_JAQCOQ010000004.1); c00005_NZ_JAQC.. (original name was: NZ_JAQCOQ010000005.1); c00006_NZ_JAQC.. (original name was: NZ_JAQCOQ010000006.1); c00007_NZ_JAQC.. (original name was: NZ_JAQCOQ010000007.1); c00008_NZ_JAQC.. (original name was: NZ_JAQCOQ010000008.1); c00009_NZ_JAQC.. (original name was: NZ_JAQCOQ010000009.1); c00010_NZ_JAQC.. (original name was: NZ_JAQCOQ010000010.1); c00012_NZ_JAQC.. (original name was: NZ_JAQCOQ010000012.1); c00013_NZ_JAQC.. (original name was: NZ_JAQCOQ010000013.1); c00015_NZ_JAQC.. (original name was: NZ_JAQCOQ010000015.1); c00016_NZ_JAQC.. (original name was: NZ_JAQCOQ010000016.1); c00017_NZ_JAQC.. (original name was: NZ_JAQCOQ010000017.1); c00018_NZ_JAQC.. (original name was: NZ_JAQCOQ010000018.1); c00019_NZ_JAQC.. (original name was: NZ_JAQCOQ010000019.1); c00020_NZ_JAQC.. (original name was: NZ_JAQCOQ010000020.1); c00021_NZ_JAQC.. (original name was: NZ_JAQCOQ010000021.1); c00022_NZ_JAQC.. (original name was: NZ_JAQCOQ010000022.1); c00024_NZ_JAQC.. (original name was: NZ_JAQCOQ010000024.1); c00026_NZ_JAQC.. (original name was: NZ_JAQCOQ010000026.1); c00027_NZ_JAQC.. (original name was: NZ_JAQCOQ010000027.1); c00028_NZ_JAQC.. (original name was: NZ_JAQCOQ010000028.1); c00029_NZ_JAQC.. (original name was: NZ_JAQCOQ010000029.1); c00030_NZ_JAQC.. (original name was: NZ_JAQCOQ010000030.1); c00031_NZ_JAQC.. (original name was: NZ_JAQCOQ010000031.1); c00032_NZ_JAQC.. (original name was: NZ_JAQCOQ010000032.1); c00033_NZ_JAQC.. (original name was: NZ_JAQCOQ010000033.1); c00035_NZ_JAQC.. (original name was: NZ_JAQCOQ010000035.1); c00036_NZ_JAQC.. (original name was: NZ_JAQCOQ010000036.1); c00038_NZ_JAQC.. (original name was: NZ_JAQCOQ010000038.1); c00039_NZ_JAQC.. (original name was: NZ_JAQCOQ010000039.1); c00040_NZ_JAQC.. (original name was: NZ_JAQCOQ010000040.1); c00041_NZ_JAQC.. (original name was: NZ_JAQCOQ010000041.1); c00042_NZ_JAQC.. (original name was: NZ_JAQCOQ010000042.1); c00043_NZ_JAQC.. (original name was: NZ_JAQCOQ010000043.1); c00044_NZ_JAQC.. (original name was: NZ_JAQCOQ010000044.1); c00045_NZ_JAQC.. (original name was: NZ_JAQCOQ010000045.1); c00046_NZ_JAQC.. (original name was: NZ_JAQCOQ010000046.1); c00047_NZ_JAQC.. (original name was: NZ_JAQCOQ010000047.1); c00048_NZ_JAQC.. (original name was: NZ_JAQCOQ010000048.1); c00049_NZ_JAQC.. (original name was: NZ_JAQCOQ010000049.1); c00050_NZ_JAQC.. (original name was: NZ_JAQCOQ010000050.1); c00051_NZ_JAQC.. (original name was: NZ_JAQCOQ010000051.1); c00052_NZ_JAQC.. (original name was: NZ_JAQCOQ010000052.1); c00053_NZ_JAQC.. (original name was: NZ_JAQCOQ010000053.1); c00054_NZ_JAQC.. (original name was: NZ_JAQCOQ010000054.1); c00056_NZ_JAQC.. (original name was: NZ_JAQCOQ010000056.1); c00058_NZ_JAQC.. (original name was: NZ_JAQCOQ010000058.1); c00059_NZ_JAQC.. (original name was: NZ_JAQCOQ010000059.1); c00060_NZ_JAQC.. (original name was: NZ_JAQCOQ010000060.1); c00061_NZ_JAQC.. (original name was: NZ_JAQCOQ010000061.1); c00062_NZ_JAQC.. (original name was: NZ_JAQCOQ010000062.1); c00063_NZ_JAQC.. (original name was: NZ_JAQCOQ010000063.1); c00064_NZ_JAQC.. (original name was: NZ_JAQCOQ010000064.1); c00065_NZ_JAQC.. (original name was: NZ_JAQCOQ010000065.1); c00066_NZ_JAQC.. (original name was: NZ_JAQCOQ010000066.1); c00067_NZ_JAQC.. (original name was: NZ_JAQCOQ010000067.1); c00068_NZ_JAQC.. (original name was: NZ_JAQCOQ010000068.1); c00069_NZ_JAQC.. (original name was: NZ_JAQCOQ010000069.1); c00070_NZ_JAQC.. (original name was: NZ_JAQCOQ010000070.1); c00071_NZ_JAQC.. (original name was: NZ_JAQCOQ010000071.1); c00072_NZ_JAQC.. (original name was: NZ_JAQCOQ010000072.1); c00073_NZ_JAQC.. (original name was: NZ_JAQCOQ010000073.1); c00075_NZ_JAQC.. (original name was: NZ_JAQCOQ010000075.1); c00076_NZ_JAQC.. (original name was: NZ_JAQCOQ010000076.1); c00077_NZ_JAQC.. (original name was: NZ_JAQCOQ010000077.1); c00078_NZ_JAQC.. (original name was: NZ_JAQCOQ010000078.1); c00079_NZ_JAQC.. (original name was: NZ_JAQCOQ010000079.1); c00080_NZ_JAQC.. (original name was: NZ_JAQCOQ010000080.1); c00081_NZ_JAQC.. (original name was: NZ_JAQCOQ010000081.1); c00082_NZ_JAQC.. (original name was: NZ_JAQCOQ010000082.1); c00083_NZ_JAQC.. (original name was: NZ_JAQCOQ010000083.1); c00084_NZ_JAQC.. (original name was: NZ_JAQCOQ010000084.1); c00085_NZ_JAQC.. (original name was: NZ_JAQCOQ010000085.1); c00086_NZ_JAQC.. (original name was: NZ_JAQCOQ010000086.1); c00088_NZ_JAQC.. (original name was: NZ_JAQCOQ010000088.1); c00089_NZ_JAQC.. (original name was: NZ_JAQCOQ010000089.1); c00090_NZ_JAQC.. (original name was: NZ_JAQCOQ010000090.1); c00091_NZ_JAQC.. (original name was: NZ_JAQCOQ010000091.1); c00092_NZ_JAQC.. (original name was: NZ_JAQCOQ010000092.1); c00093_NZ_JAQC.. (original name was: NZ_JAQCOQ010000093.1); c00094_NZ_JAQC.. (original name was: NZ_JAQCOQ010000094.1); c00095_NZ_JAQC.. (original name was: NZ_JAQCOQ010000095.1); c00096_NZ_JAQC.. (original name was: NZ_JAQCOQ010000096.1); c00097_NZ_JAQC.. (original name was: NZ_JAQCOQ010000097.1); c00098_NZ_JAQC.. (original name was: NZ_JAQCOQ010000098.1); c00099_NZ_JAQC.. (original name was: NZ_JAQCOQ010000099.1); c00100_NZ_JAQC.. (original name was: NZ_JAQCOQ010000100.1); c00101_NZ_JAQC.. (original name was: NZ_JAQCOQ010000101.1); c00102_NZ_JAQC.. (original name was: NZ_JAQCOQ010000102.1); c00103_NZ_JAQC.. (original name was: NZ_JAQCOQ010000103.1); c00104_NZ_JAQC.. (original name was: NZ_JAQCOQ010000104.1); c00105_NZ_JAQC.. (original name was: NZ_JAQCOQ010000105.1); c00106_NZ_JAQC.. (original name was: NZ_JAQCOQ010000106.1); c00107_NZ_JAQC.. (original name was: NZ_JAQCOQ010000107.1); c00108_NZ_JAQC.. (original name was: NZ_JAQCOQ010000108.1); c00109_NZ_JAQC.. (original name was: NZ_JAQCOQ010000109.1); c00110_NZ_JAQC.. (original name was: NZ_JAQCOQ010000110.1); c00111_NZ_JAQC.. (original name was: NZ_JAQCOQ010000111.1); c00112_NZ_JAQC.. (original name was: NZ_JAQCOQ010000112.1); c00113_NZ_JAQC.. (original name was: NZ_JAQCOQ010000113.1); c00114_NZ_JAQC.. (original name was: NZ_JAQCOQ010000114.1); c00115_NZ_JAQC.. (original name was: NZ_JAQCOQ010000115.1); c00116_NZ_JAQC.. (original name was: NZ_JAQCOQ010000116.1); c00117_NZ_JAQC.. (original name was: NZ_JAQCOQ010000117.1); c00118_NZ_JAQC.. (original name was: NZ_JAQCOQ010000118.1); c00119_NZ_JAQC.. (original name was: NZ_JAQCOQ010000119.1); c00120_NZ_JAQC.. (original name was: NZ_JAQCOQ010000120.1); c00121_NZ_JAQC.. (original name was: NZ_JAQCOQ010000121.1); c00122_NZ_JAQC.. (original name was: NZ_JAQCOQ010000122.1); c00123_NZ_JAQC.. (original name was: NZ_JAQCOQ010000123.1); c00124_NZ_JAQC.. (original name was: NZ_JAQCOQ010000124.1); c00125_NZ_JAQC.. (original name was: NZ_JAQCOQ010000125.1); c00126_NZ_JAQC.. (original name was: NZ_JAQCOQ010000126.1); c00127_NZ_JAQC.. (original name was: NZ_JAQCOQ010000127.1); c00128_NZ_JAQC.. (original name was: NZ_JAQCOQ010000128.1); c00129_NZ_JAQC.. (original name was: NZ_JAQCOQ010000129.1); c00130_NZ_JAQC.. (original name was: NZ_JAQCOQ010000130.1); c00131_NZ_JAQC.. (original name was: NZ_JAQCOQ010000131.1); c00132_NZ_JAQC.. (original name was: NZ_JAQCOQ010000132.1); c00133_NZ_JAQC.. (original name was: NZ_JAQCOQ010000133.1); c00134_NZ_JAQC.. (original name was: NZ_JAQCOQ010000134.1); c00135_NZ_JAQC.. (original name was: NZ_JAQCOQ010000135.1); c00136_NZ_JAQC.. (original name was: NZ_JAQCOQ010000136.1); c00137_NZ_JAQC.. (original name was: NZ_JAQCOQ010000137.1); c00138_NZ_JAQC.. (original name was: NZ_JAQCOQ010000138.1); c00139_NZ_JAQC.. (original name was: NZ_JAQCOQ010000139.1); c00140_NZ_JAQC.. (original name was: NZ_JAQCOQ010000140.1); c00141_NZ_JAQC.. (original name was: NZ_JAQCOQ010000141.1); c00142_NZ_JAQC.. (original name was: NZ_JAQCOQ010000142.1); c00143_NZ_JAQC.. (original name was: NZ_JAQCOQ010000143.1); c00144_NZ_JAQC.. (original name was: NZ_JAQCOQ010000144.1); c00145_NZ_JAQC.. (original name was: NZ_JAQCOQ010000145.1); c00146_NZ_JAQC.. (original name was: NZ_JAQCOQ010000146.1); c00147_NZ_JAQC.. (original name was: NZ_JAQCOQ010000147.1); c00148_NZ_JAQC.. (original name was: NZ_JAQCOQ010000148.1); c00149_NZ_JAQC.. (original name was: NZ_JAQCOQ010000149.1); c00150_NZ_JAQC.. (original name was: NZ_JAQCOQ010000150.1); c00151_NZ_JAQC.. (original name was: NZ_JAQCOQ010000151.1); c00152_NZ_JAQC.. (original name was: NZ_JAQCOQ010000152.1)

Compact view

c00011_NZ_JAQC.. - Region 1 - Rnf_complex

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Location: 9,132 - 34,352 nt. (total: 25,221 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

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electron transport genes

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c00014_NZ_JAQC.. - Region 1 - NADH_dehydrogenase_I

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Location: 28,832 - 58,720 nt. (total: 29,889 nt) Show pHMM detection rules used

NADH_dehydrogenase_I: (Oxidored_q4 and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and NADHdh and Oxidored_q3 and Oxidored_q2 and minimum(4, [Fe-2S_thioredx, Fer2_4, Fer4_7, Molybdop_Fe4S4, Molydop_binding, NADH-G_4Fe-4S_3, NADH_4Fe-4S, Proton_antipo_M, Proton_antipo_N, SLBB]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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c00023_NZ_JAQC.. - Region 1 - TPP_AA_metabolism

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Location: 34,248 - 52,186 nt. (total: 17,939 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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KnownClusterBlast

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No matches found.

c00025_NZ_JAQC.. - Region 1 - PFOR_II_pathway

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Location: 1 - 17,073 nt. (total: 17,073 nt) Show pHMM detection rules used

Region on contig edge.

PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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c00034_NZ_JAQC.. - Region 1 - TPP_fatty_acids

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Location: 1 - 16,200 nt. (total: 16,200 nt) Show pHMM detection rules used

Region on contig edge.

TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00037_NZ_JAQC.. - Region 1 - succinate2propionate

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Location: 5,877 - 33,894 nt. (total: 28,018 nt) Show pHMM detection rules used

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

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c00055_NZ_JAQC.. - Region 1 - succinate2propionate

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Location: 1 - 21,289 nt. (total: 21,289 nt) Show pHMM detection rules used

Region on contig edge.

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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c00057_NZ_JAQC.. - Region 1 - porA

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Location: 947 - 23,834 nt. (total: 22,888 nt) Show pHMM detection rules used

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

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electron transport genes

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c00074_NZ_JAQC.. - Region 1 - Fumarate2succinate

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Location: 1 - 18,512 nt. (total: 18,512 nt) Show pHMM detection rules used

Region on contig edge.

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

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electron transport genes

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c00087_NZ_JAQC.. - Region 1 - Pyruvate2acetate-formate

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Location: 1 - 15,433 nt. (total: 15,433 nt) Show pHMM detection rules used

Region on contig edge.

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters