GCF_004342485.1_ASM434248v1_genomic - 13 region(s)

Identified primary metabolite regions

NZ_SMBU01000001 (original name was: NZ_SMBU01000001.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 1.1	fatty_acids-unassigned	Putative	44,948	68,323	Acetate to butyrate C. sporogenes	BUT	50%

NZ_SMBU01000002 (original name was: NZ_SMBU01000002.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 2.1	Fumarate2succinate	SCFA	134,928	157,424	Fumarate2succinate suc dh E. coli	SUC	100%
Region 2.2	succinate2propionate	SCFA	172,624	201,803	Succinate to propionate V. parvulla	PRO	50%

NZ_SMBU01000004 (original name was: NZ_SMBU01000004.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 4.1	NADH_dehydrogenase_I	E-MGC	180,195	214,802	NADH dehydrogenase I E. coli	NADHD	69%
Region 4.2	Glycine_cleavage	Other	224,341	248,757	Glycine cleavage C. sticklandii	GLY	60%

NZ_SMBU01000005 (original name was: NZ_SMBU01000005.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 5.1	fatty_acids-unassigned	Putative	89,669	118,509

NZ_SMBU01000010 (original name was: NZ_SMBU01000010.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 10.1	OD_AA_metabolism	Putative	13,615	37,102

NZ_SMBU01000012 (original name was: NZ_SMBU01000012.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 12.1	Nitrate_reductase	E-MGC	19,218	45,955	Nitrate reductase E. coli	NIR	80%

NZ_SMBU01000015 (original name was: NZ_SMBU01000015.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 15.1	fatty_acids-unassigned	Putative	10,746	39,078	Acetate to butyrate C. sporogenes	BUT	33%

NZ_SMBU01000020 (original name was: NZ_SMBU01000020.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 20.1	histidine2glutamate_hutHGIU_operon	Other	1	23,579	Histidine to glutamate K. pneumoniae	GLU	80%

NZ_SMBU01000023 (original name was: NZ_SMBU01000023.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 23.1	Putrescine2spermidine	Aliphatic_amine	59,192	82,784

NZ_SMBU01000027 (original name was: NZ_SMBU01000027.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 27.1	fatty_acids-unassigned	Putative	21,023	48,217	Acetate to butyrate C. sporogenes	BUT	33%

NZ_SMBU01000049 (original name was: NZ_SMBU01000049.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 49.1	Formate_dehydrogenase	E-MGC	2,240	26,842	Formate dehydrogenase E. coli	FORM	100%

No primary metabolite regions were found in these records:: NZ_SMBU01000003 (original name was: NZ_SMBU01000003.1); NZ_SMBU01000006 (original name was: NZ_SMBU01000006.1); NZ_SMBU01000007 (original name was: NZ_SMBU01000007.1); NZ_SMBU01000008 (original name was: NZ_SMBU01000008.1); NZ_SMBU01000009 (original name was: NZ_SMBU01000009.1); NZ_SMBU01000011 (original name was: NZ_SMBU01000011.1); NZ_SMBU01000013 (original name was: NZ_SMBU01000013.1); NZ_SMBU01000014 (original name was: NZ_SMBU01000014.1); NZ_SMBU01000016 (original name was: NZ_SMBU01000016.1); NZ_SMBU01000017 (original name was: NZ_SMBU01000017.1); NZ_SMBU01000018 (original name was: NZ_SMBU01000018.1); NZ_SMBU01000019 (original name was: NZ_SMBU01000019.1); NZ_SMBU01000021 (original name was: NZ_SMBU01000021.1); NZ_SMBU01000022 (original name was: NZ_SMBU01000022.1); NZ_SMBU01000024 (original name was: NZ_SMBU01000024.1); NZ_SMBU01000025 (original name was: NZ_SMBU01000025.1); NZ_SMBU01000026 (original name was: NZ_SMBU01000026.1); NZ_SMBU01000028 (original name was: NZ_SMBU01000028.1); NZ_SMBU01000029 (original name was: NZ_SMBU01000029.1); NZ_SMBU01000030 (original name was: NZ_SMBU01000030.1); NZ_SMBU01000031 (original name was: NZ_SMBU01000031.1); NZ_SMBU01000032 (original name was: NZ_SMBU01000032.1); NZ_SMBU01000033 (original name was: NZ_SMBU01000033.1); NZ_SMBU01000034 (original name was: NZ_SMBU01000034.1); NZ_SMBU01000035 (original name was: NZ_SMBU01000035.1); NZ_SMBU01000036 (original name was: NZ_SMBU01000036.1); NZ_SMBU01000037 (original name was: NZ_SMBU01000037.1); NZ_SMBU01000038 (original name was: NZ_SMBU01000038.1); NZ_SMBU01000039 (original name was: NZ_SMBU01000039.1); NZ_SMBU01000040 (original name was: NZ_SMBU01000040.1); NZ_SMBU01000041 (original name was: NZ_SMBU01000041.1); NZ_SMBU01000042 (original name was: NZ_SMBU01000042.1); NZ_SMBU01000043 (original name was: NZ_SMBU01000043.1); NZ_SMBU01000044 (original name was: NZ_SMBU01000044.1); NZ_SMBU01000045 (original name was: NZ_SMBU01000045.1); NZ_SMBU01000046 (original name was: NZ_SMBU01000046.1); NZ_SMBU01000047 (original name was: NZ_SMBU01000047.1); NZ_SMBU01000048 (original name was: NZ_SMBU01000048.1); NZ_SMBU01000050 (original name was: NZ_SMBU01000050.1); NZ_SMBU01000051 (original name was: NZ_SMBU01000051.1); NZ_SMBU01000052 (original name was: NZ_SMBU01000052.1); NZ_SMBU01000053 (original name was: NZ_SMBU01000053.1); NZ_SMBU01000054 (original name was: NZ_SMBU01000054.1); NZ_SMBU01000055 (original name was: NZ_SMBU01000055.1); NZ_SMBU01000056 (original name was: NZ_SMBU01000056.1); NZ_SMBU01000057 (original name was: NZ_SMBU01000057.1); NZ_SMBU01000058 (original name was: NZ_SMBU01000058.1); NZ_SMBU01000059 (original name was: NZ_SMBU01000059.1); NZ_SMBU01000060 (original name was: NZ_SMBU01000060.1); NZ_SMBU01000061 (original name was: NZ_SMBU01000061.1); NZ_SMBU01000062 (original name was: NZ_SMBU01000062.1); NZ_SMBU01000063 (original name was: NZ_SMBU01000063.1); NZ_SMBU01000064 (original name was: NZ_SMBU01000064.1); NZ_SMBU01000065 (original name was: NZ_SMBU01000065.1); NZ_SMBU01000066 (original name was: NZ_SMBU01000066.1); NZ_SMBU01000067 (original name was: NZ_SMBU01000067.1); NZ_SMBU01000068 (original name was: NZ_SMBU01000068.1); NZ_SMBU01000069 (original name was: NZ_SMBU01000069.1); NZ_SMBU01000070 (original name was: NZ_SMBU01000070.1); NZ_SMBU01000071 (original name was: NZ_SMBU01000071.1); NZ_SMBU01000072 (original name was: NZ_SMBU01000072.1); NZ_SMBU01000073 (original name was: NZ_SMBU01000073.1); NZ_SMBU01000074 (original name was: NZ_SMBU01000074.1); NZ_SMBU01000075 (original name was: NZ_SMBU01000075.1); NZ_SMBU01000076 (original name was: NZ_SMBU01000076.1); NZ_SMBU01000077 (original name was: NZ_SMBU01000077.1); NZ_SMBU01000078 (original name was: NZ_SMBU01000078.1); NZ_SMBU01000079 (original name was: NZ_SMBU01000079.1); NZ_SMBU01000080 (original name was: NZ_SMBU01000080.1); NZ_SMBU01000081 (original name was: NZ_SMBU01000081.1); NZ_SMBU01000082 (original name was: NZ_SMBU01000082.1); NZ_SMBU01000083 (original name was: NZ_SMBU01000083.1); NZ_SMBU01000084 (original name was: NZ_SMBU01000084.1); NZ_SMBU01000085 (original name was: NZ_SMBU01000085.1); NZ_SMBU01000086 (original name was: NZ_SMBU01000086.1); NZ_SMBU01000087 (original name was: NZ_SMBU01000087.1); NZ_SMBU01000088 (original name was: NZ_SMBU01000088.1); NZ_SMBU01000089 (original name was: NZ_SMBU01000089.1); NZ_SMBU01000090 (original name was: NZ_SMBU01000090.1); NZ_SMBU01000091 (original name was: NZ_SMBU01000091.1); NZ_SMBU01000092 (original name was: NZ_SMBU01000092.1); NZ_SMBU01000093 (original name was: NZ_SMBU01000093.1); NZ_SMBU01000094 (original name was: NZ_SMBU01000094.1); NZ_SMBU01000095 (original name was: NZ_SMBU01000095.1); NZ_SMBU01000096 (original name was: NZ_SMBU01000096.1); NZ_SMBU01000097 (original name was: NZ_SMBU01000097.1); NZ_SMBU01000098 (original name was: NZ_SMBU01000098.1); NZ_SMBU01000099 (original name was: NZ_SMBU01000099.1); NZ_SMBU01000100 (original name was: NZ_SMBU01000100.1); NZ_SMBU01000101 (original name was: NZ_SMBU01000101.1); NZ_SMBU01000102 (original name was: NZ_SMBU01000102.1); NZ_SMBU01000103 (original name was: NZ_SMBU01000103.1); NZ_SMBU01000104 (original name was: NZ_SMBU01000104.1); NZ_SMBU01000105 (original name was: NZ_SMBU01000105.1); NZ_SMBU01000106 (original name was: NZ_SMBU01000106.1); NZ_SMBU01000107 (original name was: NZ_SMBU01000107.1); NZ_SMBU01000108 (original name was: NZ_SMBU01000108.1)

Compact view

c00001_NZ_SMBU.. - Region 1 - fatty_acids-unassigned

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Location: 44,948 - 68,323 nt. (total: 23,376 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

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core biosynthetic genes

additional biosynthetic genes

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resistance genes

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c00002_NZ_SMBU.. - Region 1 - Fumarate2succinate

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Location: 134,928 - 157,424 nt. (total: 22,497 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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c00002_NZ_SMBU.. - Region 2 - succinate2propionate

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Location: 172,624 - 201,803 nt. (total: 29,180 nt) Show pHMM detection rules used

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

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c00004_NZ_SMBU.. - Region 1 - NADH_dehydrogenase_I

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Location: 180,195 - 214,802 nt. (total: 34,608 nt) Show pHMM detection rules used

NADH_dehydrogenase_I: (Oxidored_q4 and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and NADHdh and Oxidored_q3 and Oxidored_q2 and minimum(4, [Fe-2S_thioredx, Fer2_4, Fer4_7, Molybdop_Fe4S4, Molydop_binding, NADH-G_4Fe-4S_3, NADH_4Fe-4S, Proton_antipo_M, Proton_antipo_N, SLBB]))

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c00004_NZ_SMBU.. - Region 2 - Glycine_cleavage

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Location: 224,341 - 248,757 nt. (total: 24,417 nt) Show pHMM detection rules used

Glycine_cleavage: (minimum(2, [Aminotran_5, GCV_H, GCV_T, GDC-P, SoxG]) and GCV_H and GCV_T_C)

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c00005_NZ_SMBU.. - Region 1 - fatty_acids-unassigned

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Location: 89,669 - 118,509 nt. (total: 28,841 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

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core biosynthetic genes

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c00010_NZ_SMBU.. - Region 1 - OD_AA_metabolism

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Location: 13,615 - 37,102 nt. (total: 23,488 nt) Show pHMM detection rules used

OD_AA_metabolism: (minimum(1, [PFOR_II, POR, POR_N]) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (Gly_radical_scatole or Gly_radical or Gly_430_pcre or Gly_8-9_TMA))

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c00012_NZ_SMBU.. - Region 1 - Nitrate_reductase

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Location: 19,218 - 45,955 nt. (total: 26,738 nt) Show pHMM detection rules used

Nitrate_reductase: (Nitr_red_bet_C and Nitrate_red_del and Nitrate_red_gam and Molybdopterin and minimum(2, [Fer4_11, Molybdopterin, Molydop_binding, Nitr_red_alph_N]))

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c00015_NZ_SMBU.. - Region 1 - fatty_acids-unassigned

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Location: 10,746 - 39,078 nt. (total: 28,333 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

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c00020_NZ_SMBU.. - Region 1 - histidine2glutamate_hutHGIU_operon

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Location: 1 - 23,579 nt. (total: 23,579 nt) Show pHMM detection rules used

Region on contig edge.

histidine2glutamate_hutHGIU_operon: (minimum(3, [Amidohydro_1, Amidohydro_3, Arginase, FGase, Urocanase]) and Lyase_aromatic and Urocanase_C)

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c00023_NZ_SMBU.. - Region 1 - Putrescine2spermidine

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Location: 59,192 - 82,784 nt. (total: 23,593 nt) Show pHMM detection rules used

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

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c00027_NZ_SMBU.. - Region 1 - fatty_acids-unassigned

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Location: 21,023 - 48,217 nt. (total: 27,195 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

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c00049_NZ_SMBU.. - Region 1 - Formate_dehydrogenase

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Location: 2,240 - 26,842 nt. (total: 24,603 nt) Show pHMM detection rules used

Formate_dehydrogenase: (Molybdopterin and Form-deh_trans and not (Nitr_red_bet_C or Nitr_red_alph_N) and minimum(3, [Fer4_11, Fer4_4, Molybdop_Fe4S4, Molydop_binding, Ni_hydr_CYTB]))

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