GCF_000759055.1_04_NF40_HMP2129v01_genomic - 4 region(s)

Identified primary metabolite regions

NZ_JRNG01000002 (original name was: NZ_JRNG01000002.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 2.1	Glycine_cleavage	Other	114,587	138,964	Glycine cleavage C. sticklandii	GLY	40%

NZ_JRNG01000011 (original name was: NZ_JRNG01000011.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 11.1	Fumarate2succinate	SCFA	10,160	33,709	Fumarate to succinate B. thetaiotaomicron	SUC	66%

NZ_JRNG01000021 (original name was: NZ_JRNG01000021.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 21.1	acetate2butyrate	SCFA	24,163	52,871

NZ_JRNG01000028 (original name was: NZ_JRNG01000028.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 28.1	TPP_AA_metabolism	Putative	32,935	54,628

No primary metabolite regions were found in these records:: NZ_JRNG01000001 (original name was: NZ_JRNG01000001.1); NZ_JRNG01000003 (original name was: NZ_JRNG01000003.1); NZ_JRNG01000004 (original name was: NZ_JRNG01000004.1); NZ_JRNG01000005 (original name was: NZ_JRNG01000005.1); NZ_JRNG01000006 (original name was: NZ_JRNG01000006.1); NZ_JRNG01000007 (original name was: NZ_JRNG01000007.1); NZ_JRNG01000008 (original name was: NZ_JRNG01000008.1); NZ_JRNG01000009 (original name was: NZ_JRNG01000009.1); NZ_JRNG01000010 (original name was: NZ_JRNG01000010.1); NZ_JRNG01000012 (original name was: NZ_JRNG01000012.1); NZ_JRNG01000013 (original name was: NZ_JRNG01000013.1); NZ_JRNG01000014 (original name was: NZ_JRNG01000014.1); NZ_JRNG01000015 (original name was: NZ_JRNG01000015.1); NZ_JRNG01000016 (original name was: NZ_JRNG01000016.1); NZ_JRNG01000017 (original name was: NZ_JRNG01000017.1); NZ_JRNG01000018 (original name was: NZ_JRNG01000018.1); NZ_JRNG01000019 (original name was: NZ_JRNG01000019.1); NZ_JRNG01000020 (original name was: NZ_JRNG01000020.1); NZ_JRNG01000022 (original name was: NZ_JRNG01000022.1); NZ_JRNG01000023 (original name was: NZ_JRNG01000023.1); NZ_JRNG01000024 (original name was: NZ_JRNG01000024.1); NZ_JRNG01000025 (original name was: NZ_JRNG01000025.1); NZ_JRNG01000026 (original name was: NZ_JRNG01000026.1); NZ_JRNG01000027 (original name was: NZ_JRNG01000027.1); NZ_JRNG01000029 (original name was: NZ_JRNG01000029.1); NZ_JRNG01000030 (original name was: NZ_JRNG01000030.1); NZ_JRNG01000031 (original name was: NZ_JRNG01000031.1); NZ_JRNG01000032 (original name was: NZ_JRNG01000032.1); NZ_JRNG01000033 (original name was: NZ_JRNG01000033.1); NZ_JRNG01000034 (original name was: NZ_JRNG01000034.1); NZ_JRNG01000035 (original name was: NZ_JRNG01000035.1); NZ_JRNG01000036 (original name was: NZ_JRNG01000036.1); NZ_JRNG01000037 (original name was: NZ_JRNG01000037.1); NZ_JRNG01000038 (original name was: NZ_JRNG01000038.1); NZ_JRNG01000039 (original name was: NZ_JRNG01000039.1); NZ_JRNG01000040 (original name was: NZ_JRNG01000040.1); NZ_JRNG01000041 (original name was: NZ_JRNG01000041.1); NZ_JRNG01000042 (original name was: NZ_JRNG01000042.1); NZ_JRNG01000043 (original name was: NZ_JRNG01000043.1); NZ_JRNG01000044 (original name was: NZ_JRNG01000044.1); NZ_JRNG01000045 (original name was: NZ_JRNG01000045.1); NZ_JRNG01000046 (original name was: NZ_JRNG01000046.1); NZ_JRNG01000047 (original name was: NZ_JRNG01000047.1); NZ_JRNG01000048 (original name was: NZ_JRNG01000048.1); NZ_JRNG01000049 (original name was: NZ_JRNG01000049.1); NZ_JRNG01000050 (original name was: NZ_JRNG01000050.1); NZ_JRNG01000051 (original name was: NZ_JRNG01000051.1); NZ_JRNG01000052 (original name was: NZ_JRNG01000052.1); NZ_JRNG01000053 (original name was: NZ_JRNG01000053.1); NZ_JRNG01000054 (original name was: NZ_JRNG01000054.1); NZ_JRNG01000055 (original name was: NZ_JRNG01000055.1); NZ_JRNG01000056 (original name was: NZ_JRNG01000056.1); NZ_JRNG01000057 (original name was: NZ_JRNG01000057.1); NZ_JRNG01000058 (original name was: NZ_JRNG01000058.1); NZ_JRNG01000059 (original name was: NZ_JRNG01000059.1); NZ_JRNG01000060 (original name was: NZ_JRNG01000060.1); NZ_JRNG01000062 (original name was: NZ_JRNG01000062.1); NZ_JRNG01000063 (original name was: NZ_JRNG01000063.1); NZ_JRNG01000064 (original name was: NZ_JRNG01000064.1); NZ_JRNG01000065 (original name was: NZ_JRNG01000065.1); NZ_JRNG01000066 (original name was: NZ_JRNG01000066.1); NZ_JRNG01000067 (original name was: NZ_JRNG01000067.1); NZ_JRNG01000068 (original name was: NZ_JRNG01000068.1); NZ_JRNG01000069 (original name was: NZ_JRNG01000069.1); NZ_JRNG01000071 (original name was: NZ_JRNG01000071.1); NZ_JRNG01000072 (original name was: NZ_JRNG01000072.1); NZ_JRNG01000074 (original name was: NZ_JRNG01000074.1); NZ_JRNG01000075 (original name was: NZ_JRNG01000075.1); NZ_JRNG01000076 (original name was: NZ_JRNG01000076.1); NZ_JRNG01000077 (original name was: NZ_JRNG01000077.1); NZ_JRNG01000078 (original name was: NZ_JRNG01000078.1)

Compact view

c00002_NZ_JRNG.. - Region 1 - Glycine_cleavage

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Location: 114,587 - 138,964 nt. (total: 24,378 nt) Show pHMM detection rules used

Glycine_cleavage: (minimum(2, [Aminotran_5, GCV_H, GCV_T, GDC-P, SoxG]) and GCV_H and GCV_T_C)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00011_NZ_JRNG.. - Region 1 - Fumarate2succinate

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Location: 10,160 - 33,709 nt. (total: 23,550 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00021_NZ_JRNG.. - Region 1 - acetate2butyrate

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Location: 24,163 - 52,871 nt. (total: 28,709 nt) Show pHMM detection rules used

acetate2butyrate: (not (POR or POR_N or PFOR_II) and minimum(4, [Acyl-CoA_dh_1, Acyl-CoA_dh_2, ECH_2, ETF, ETF_alpha, HCDH_N, Thiolase_N, ketoacyl-synt]) and HCDH and minimum(1, [EC1_2-faecali, ECH1_Enoyl_CoA_DH1, ECH1_Enoyl_CoA_DH2, ECH1_Enoyl_CoA_DH3, ECH1_Enoyl_CoA_DH4, Thiolase_C]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.

c00028_NZ_JRNG.. - Region 1 - TPP_AA_metabolism

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Location: 32,935 - 54,628 nt. (total: 21,694 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.