GCF_001405615.1_13414_6_47_genomic - 7 region(s)

Identified primary metabolite regions

NZ_CYXV01000001 (original name was: NZ_CYXV01000001.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 1.1	acetate2butyrate	SCFA	8,515	33,762	Acetate to butyrate C. sporogenes	BUT	83%

NZ_CYXV01000002 (original name was: NZ_CYXV01000002.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 2.1	succinate2propionate,Rnf_complex	E-MGC	29,937	67,382	Rnf complex C. sporogenes	RNF	100%

NZ_CYXV01000004 (original name was: NZ_CYXV01000004.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 4.1	Others_HGD_unassigned	Putative	227,021	251,274

NZ_CYXV01000007 (original name was: NZ_CYXV01000007.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 7.1	Others_HGD_unassigned	Putative	128,393	151,379

NZ_CYXV01000008 (original name was: NZ_CYXV01000008.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 8.1	PFOR_II_pathway	SCFA	123,206	146,736	PFOR II pathway B. thetaiotaomicron	PFORII	100%

NZ_CYXV01000015 (original name was: NZ_CYXV01000015.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 15.1	Pyruvate2acetate-formate	SCFA	22,581	45,766	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

NZ_CYXV01000016 (original name was: NZ_CYXV01000016.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 16.1	Putrescine2spermidine	Aliphatic_amine	30,581	53,924	Putrescine2spermidine E. rectale	SPRM	100%

No primary metabolite regions were found in these records:: NZ_CYXV01000003 (original name was: NZ_CYXV01000003.1); NZ_CYXV01000005 (original name was: NZ_CYXV01000005.1); NZ_CYXV01000006 (original name was: NZ_CYXV01000006.1); NZ_CYXV01000009 (original name was: NZ_CYXV01000009.1); NZ_CYXV01000010 (original name was: NZ_CYXV01000010.1); NZ_CYXV01000011 (original name was: NZ_CYXV01000011.1); NZ_CYXV01000012 (original name was: NZ_CYXV01000012.1); NZ_CYXV01000013 (original name was: NZ_CYXV01000013.1); NZ_CYXV01000014 (original name was: NZ_CYXV01000014.1); NZ_CYXV01000017 (original name was: NZ_CYXV01000017.1); NZ_CYXV01000018 (original name was: NZ_CYXV01000018.1); NZ_CYXV01000019 (original name was: NZ_CYXV01000019.1); NZ_CYXV01000020 (original name was: NZ_CYXV01000020.1); NZ_CYXV01000021 (original name was: NZ_CYXV01000021.1); NZ_CYXV01000022 (original name was: NZ_CYXV01000022.1); NZ_CYXV01000023 (original name was: NZ_CYXV01000023.1); NZ_CYXV01000024 (original name was: NZ_CYXV01000024.1); NZ_CYXV01000025 (original name was: NZ_CYXV01000025.1); NZ_CYXV01000026 (original name was: NZ_CYXV01000026.1); NZ_CYXV01000027 (original name was: NZ_CYXV01000027.1); NZ_CYXV01000028 (original name was: NZ_CYXV01000028.1); NZ_CYXV01000029 (original name was: NZ_CYXV01000029.1); NZ_CYXV01000030 (original name was: NZ_CYXV01000030.1); NZ_CYXV01000031 (original name was: NZ_CYXV01000031.1); NZ_CYXV01000032 (original name was: NZ_CYXV01000032.1); NZ_CYXV01000033 (original name was: NZ_CYXV01000033.1); NZ_CYXV01000034 (original name was: NZ_CYXV01000034.1); NZ_CYXV01000035 (original name was: NZ_CYXV01000035.1); NZ_CYXV01000036 (original name was: NZ_CYXV01000036.1)

Compact view

c00001_NZ_CYXV.. - Region 1 - acetate2butyrate

Download region GenBank file

Location: 8,515 - 33,762 nt. (total: 25,248 nt) Show pHMM detection rules used

acetate2butyrate: (not (POR or POR_N or PFOR_II) and minimum(4, [Acyl-CoA_dh_1, Acyl-CoA_dh_2, ECH_2, ETF, ETF_alpha, HCDH_N, Thiolase_N, ketoacyl-synt]) and HCDH and minimum(1, [EC1_2-faecali, ECH1_Enoyl_CoA_DH1, ECH1_Enoyl_CoA_DH2, ECH1_Enoyl_CoA_DH3, ECH1_Enoyl_CoA_DH4, Thiolase_C]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

c00002_NZ_CYXV.. - Region 1 - Rnf_complex,succinate2propionate

Download region GenBank file

Location: 29,937 - 67,382 nt. (total: 37,446 nt) Show pHMM detection rules used

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)
Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

c00004_NZ_CYXV.. - Region 1 - Others_HGD_unassigned

Download region GenBank file

Location: 227,021 - 251,274 nt. (total: 24,254 nt) Show pHMM detection rules used

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.

c00007_NZ_CYXV.. - Region 1 - Others_HGD_unassigned

Download region GenBank file

Location: 128,393 - 151,379 nt. (total: 22,987 nt) Show pHMM detection rules used

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.

c00008_NZ_CYXV.. - Region 1 - PFOR_II_pathway

Download region GenBank file

Location: 123,206 - 146,736 nt. (total: 23,531 nt) Show pHMM detection rules used

PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

c00015_NZ_CYXV.. - Region 1 - Pyruvate2acetate-formate

Download region GenBank file

Location: 22,581 - 45,766 nt. (total: 23,186 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

c00016_NZ_CYXV.. - Region 1 - Putrescine2spermidine

Download region GenBank file

Location: 30,581 - 53,924 nt. (total: 23,344 nt) Show pHMM detection rules used

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters