GCF_007830415.1_ASM783041v1_genomic - 3 region(s)

Identified primary metabolite regions

NZ_VLKM01000003 (original name was: NZ_VLKM01000003.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 3.1	Putrescine2spermidine	Aliphatic_amine	192,635	216,136

NZ_VLKM01000013 (original name was: NZ_VLKM01000013.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 13.1	Fumarate2succinate	SCFA	7,088	30,720	Fumarate to succinate B. thetaiotaomicron	SUC	66%

NZ_VLKM01000017 (original name was: NZ_VLKM01000017.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 17.1	TPP_AA_metabolism	Putative	1	8,008

Region	Type	Class	From	To	Most similar known cluster	Similarity
Region 3.1	Putrescine2spermidine	Aliphatic_amine	192,635	216,136
Region 13.1	Fumarate2succinate	SCFA	7,088	30,720	Fumarate to succinate B. thetaiotaomicron	SUC	66%
Region 17.1	TPP_AA_metabolism	Putative	1	8,008

No primary metabolite regions were found in these records:: NZ_VLKM01000001 (original name was: NZ_VLKM01000001.1); NZ_VLKM01000002 (original name was: NZ_VLKM01000002.1); NZ_VLKM01000004 (original name was: NZ_VLKM01000004.1); NZ_VLKM01000005 (original name was: NZ_VLKM01000005.1); NZ_VLKM01000006 (original name was: NZ_VLKM01000006.1); NZ_VLKM01000007 (original name was: NZ_VLKM01000007.1); NZ_VLKM01000008 (original name was: NZ_VLKM01000008.1); NZ_VLKM01000009 (original name was: NZ_VLKM01000009.1); NZ_VLKM01000010 (original name was: NZ_VLKM01000010.1); NZ_VLKM01000011 (original name was: NZ_VLKM01000011.1); NZ_VLKM01000012 (original name was: NZ_VLKM01000012.1); NZ_VLKM01000014 (original name was: NZ_VLKM01000014.1); NZ_VLKM01000015 (original name was: NZ_VLKM01000015.1); NZ_VLKM01000016 (original name was: NZ_VLKM01000016.1); NZ_VLKM01000018 (original name was: NZ_VLKM01000018.1); NZ_VLKM01000019 (original name was: NZ_VLKM01000019.1); NZ_VLKM01000020 (original name was: NZ_VLKM01000020.1); NZ_VLKM01000021 (original name was: NZ_VLKM01000021.1); NZ_VLKM01000022 (original name was: NZ_VLKM01000022.1); NZ_VLKM01000023 (original name was: NZ_VLKM01000023.1); NZ_VLKM01000024 (original name was: NZ_VLKM01000024.1); NZ_VLKM01000025 (original name was: NZ_VLKM01000025.1)

Compact view

c00003_NZ_VLKM.. - Region 1 - Putrescine2spermidine

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Location: 192,635 - 216,136 nt. (total: 23,502 nt) Show pHMM detection rules used

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

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core biosynthetic genes

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c00013_NZ_VLKM.. - Region 1 - Fumarate2succinate

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Location: 7,088 - 30,720 nt. (total: 23,633 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00017_NZ_VLKM.. - Region 1 - TPP_AA_metabolism

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Location: 1 - 8,008 nt. (total: 8,008 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

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