GCF_900111595.1_IMG-taxon_2606217760_annotated_assembly_genomic - 7 region(s)

Identified primary metabolite regions

NZ_FOHN01000012 (original name was: NZ_FOHN01000012.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 18.1	Putrescine2spermidine	Aliphatic_amine	2,169	26,245	Arginine2putrescine R. gnavus	PUTR	100%

NZ_FOHN01000007 (original name was: NZ_FOHN01000007.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 27.1	Others_HGD_unassigned	Putative	108,694	132,926

NZ_FOHN01000008 (original name was: NZ_FOHN01000008.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 29.1	Rnf_complex	E-MGC	75,041	100,157	Rnf complex C. sporogenes	RNF	100%

NZ_FOHN01000032 (original name was: NZ_FOHN01000032.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 33.1	succinate2propionate	SCFA	11,981	31,501	Succinate to propionate A. sp. KLE1797	SUC	42%

NZ_FOHN01000009 (original name was: NZ_FOHN01000009.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 35.1	Pyruvate2acetate-formate	SCFA	74,610	97,605	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

NZ_FOHN01000002 (original name was: NZ_FOHN01000002.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 38.1	acetate2butyrate	SCFA	177,573	203,679	Acetate to butyrate C. sporogenes	BUT	100%

NZ_FOHN01000018 (original name was: NZ_FOHN01000018.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 41.1	TPP_fatty_acids,fatty_acids-unassigned	Putative	31,353	67,945

No primary metabolite regions were found in these records:: NZ_FOHN01000054 (original name was: NZ_FOHN01000054.1); NZ_FOHN01000052 (original name was: NZ_FOHN01000052.1); NZ_FOHN01000049 (original name was: NZ_FOHN01000049.1); NZ_FOHN01000048 (original name was: NZ_FOHN01000048.1); NZ_FOHN01000047 (original name was: NZ_FOHN01000047.1); NZ_FOHN01000021 (original name was: NZ_FOHN01000021.1); NZ_FOHN01000019 (original name was: NZ_FOHN01000019.1); NZ_FOHN01000003 (original name was: NZ_FOHN01000003.1); NZ_FOHN01000020 (original name was: NZ_FOHN01000020.1); NZ_FOHN01000053 (original name was: NZ_FOHN01000053.1); NZ_FOHN01000022 (original name was: NZ_FOHN01000022.1); NZ_FOHN01000017 (original name was: NZ_FOHN01000017.1); NZ_FOHN01000005 (original name was: NZ_FOHN01000005.1); NZ_FOHN01000016 (original name was: NZ_FOHN01000016.1); NZ_FOHN01000015 (original name was: NZ_FOHN01000015.1); NZ_FOHN01000014 (original name was: NZ_FOHN01000014.1); NZ_FOHN01000013 (original name was: NZ_FOHN01000013.1); NZ_FOHN01000050 (original name was: NZ_FOHN01000050.1); NZ_FOHN01000011 (original name was: NZ_FOHN01000011.1); NZ_FOHN01000040 (original name was: NZ_FOHN01000040.1); NZ_FOHN01000001 (original name was: NZ_FOHN01000001.1); NZ_FOHN01000010 (original name was: NZ_FOHN01000010.1); NZ_FOHN01000033 (original name was: NZ_FOHN01000033.1); NZ_FOHN01000042 (original name was: NZ_FOHN01000042.1); NZ_FOHN01000006 (original name was: NZ_FOHN01000006.1); NZ_FOHN01000004 (original name was: NZ_FOHN01000004.1); NZ_FOHN01000027 (original name was: NZ_FOHN01000027.1); NZ_FOHN01000024 (original name was: NZ_FOHN01000024.1); NZ_FOHN01000029 (original name was: NZ_FOHN01000029.1); NZ_FOHN01000037 (original name was: NZ_FOHN01000037.1); NZ_FOHN01000031 (original name was: NZ_FOHN01000031.1); NZ_FOHN01000028 (original name was: NZ_FOHN01000028.1); NZ_FOHN01000025 (original name was: NZ_FOHN01000025.1); NZ_FOHN01000034 (original name was: NZ_FOHN01000034.1); NZ_FOHN01000035 (original name was: NZ_FOHN01000035.1); NZ_FOHN01000026 (original name was: NZ_FOHN01000026.1); NZ_FOHN01000030 (original name was: NZ_FOHN01000030.1); NZ_FOHN01000038 (original name was: NZ_FOHN01000038.1); NZ_FOHN01000039 (original name was: NZ_FOHN01000039.1); NZ_FOHN01000023 (original name was: NZ_FOHN01000023.1); NZ_FOHN01000041 (original name was: NZ_FOHN01000041.1); NZ_FOHN01000044 (original name was: NZ_FOHN01000044.1); NZ_FOHN01000051 (original name was: NZ_FOHN01000051.1); NZ_FOHN01000036 (original name was: NZ_FOHN01000036.1); NZ_FOHN01000043 (original name was: NZ_FOHN01000043.1); NZ_FOHN01000045 (original name was: NZ_FOHN01000045.1); NZ_FOHN01000046 (original name was: NZ_FOHN01000046.1)

Compact view

c00018_NZ_FOHN.. - Region 1 - Putrescine2spermidine

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Location: 2,169 - 26,245 nt. (total: 24,077 nt) Show pHMM detection rules used

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

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c00027_NZ_FOHN.. - Region 1 - Others_HGD_unassigned

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Location: 108,694 - 132,926 nt. (total: 24,233 nt) Show pHMM detection rules used

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

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c00029_NZ_FOHN.. - Region 1 - Rnf_complex

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Location: 75,041 - 100,157 nt. (total: 25,117 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

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c00033_NZ_FOHN.. - Region 1 - succinate2propionate

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Location: 11,981 - 31,501 nt. (total: 19,521 nt) Show pHMM detection rules used

Region on contig edge.

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

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c00035_NZ_FOHN.. - Region 1 - Pyruvate2acetate-formate

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Location: 74,610 - 97,605 nt. (total: 22,996 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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c00038_NZ_FOHN.. - Region 1 - acetate2butyrate

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Location: 177,573 - 203,679 nt. (total: 26,107 nt) Show pHMM detection rules used

acetate2butyrate: (not (POR or POR_N or PFOR_II) and minimum(4, [Acyl-CoA_dh_1, Acyl-CoA_dh_2, ECH_2, ETF, ETF_alpha, HCDH_N, Thiolase_N, ketoacyl-synt]) and HCDH and minimum(1, [EC1_2-faecali, ECH1_Enoyl_CoA_DH1, ECH1_Enoyl_CoA_DH2, ECH1_Enoyl_CoA_DH3, ECH1_Enoyl_CoA_DH4, Thiolase_C]))

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c00041_NZ_FOHN.. - Region 1 - TPP_fatty_acids,fatty_acids-unassigned

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Location: 31,353 - 67,945 nt. (total: 36,593 nt) Show pHMM detection rules used

Region on contig edge.

TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))
fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

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