GCF_022786785.1_ASM2278678v1_genomic - 8 region(s)

Identified primary metabolite regions

c00001_NZ_JALF.. (original name was: NZ_JALFWS010000017.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 1.1	Fumarate2succinate	SCFA	17,182	40,569	Fumarate to succinate B. thetaiotaomicron	SUC	66%

c00003_NZ_JALF.. (original name was: NZ_JALFWS010000013.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 3.1	Arginine2_Hcarbonate	Other	10,431	31,872	Arginine to hydrogen carbonate P. aeruginosa	ARG	66%

c00006_NZ_JALF.. (original name was: NZ_JALFWS010000004.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 6.1	TPP_AA_metabolism	Putative	1	26,366

c00008_NZ_JALF.. (original name was: NZ_JALFWS010000008.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 8.1	Others_HGD_unassigned	Putative	38,128	78,266

c00012_NZ_JALF.. (original name was: NZ_JALFWS010000024.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 12.1	Respiratory_glycerol	E-MGC	2,685	26,897	GlycerolP to glyceroneP E. coli	GLYP	66%

c00014_NZ_JALF.. (original name was: NZ_JALFWS010000001.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 14.1	Pyruvate2acetate-formate	SCFA	14,799	38,277	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

c00019_NZ_JALF.. (original name was: NZ_JALFWS010000021.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 19.1	Fumarate2succinate	SCFA	43,736	66,485	Fumarate to succinate B. thetaiotaomicron	SUC	66%

c00024_NZ_JALF.. (original name was: NZ_JALFWS010000019.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 24.1	NADH_dehydrogenase_I	E-MGC	49,777	79,516	NADH dehydrogenase I E. coli	NADHD	46%

No primary metabolite regions were found in these records:: c00002_NZ_JALF.. (original name was: NZ_JALFWS010000022.1); c00004_NZ_JALF.. (original name was: NZ_JALFWS010000018.1); c00005_NZ_JALF.. (original name was: NZ_JALFWS010000005.1); c00007_NZ_JALF.. (original name was: NZ_JALFWS010000006.1); c00009_NZ_JALF.. (original name was: NZ_JALFWS010000012.1); c00010_NZ_JALF.. (original name was: NZ_JALFWS010000007.1); c00011_NZ_JALF.. (original name was: NZ_JALFWS010000014.1); c00013_NZ_JALF.. (original name was: NZ_JALFWS010000003.1); c00015_NZ_JALF.. (original name was: NZ_JALFWS010000015.1); c00016_NZ_JALF.. (original name was: NZ_JALFWS010000025.1); c00017_NZ_JALF.. (original name was: NZ_JALFWS010000026.1); c00018_NZ_JALF.. (original name was: NZ_JALFWS010000002.1); c00020_NZ_JALF.. (original name was: NZ_JALFWS010000023.1); c00021_NZ_JALF.. (original name was: NZ_JALFWS010000009.1); c00022_NZ_JALF.. (original name was: NZ_JALFWS010000016.1); c00023_NZ_JALF.. (original name was: NZ_JALFWS010000011.1); c00025_NZ_JALF.. (original name was: NZ_JALFWS010000010.1); c00026_NZ_JALF.. (original name was: NZ_JALFWS010000020.1)

Compact view

c00001_NZ_JALF.. - Region 1 - Fumarate2succinate

Download region GenBank file

Location: 17,182 - 40,569 nt. (total: 23,388 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

TTA codons

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

c00003_NZ_JALF.. - Region 1 - Arginine2_Hcarbonate

Download region GenBank file

Location: 10,431 - 31,872 nt. (total: 21,442 nt) Show pHMM detection rules used

Region on contig edge.

Arginine2_Hcarbonate: (Amidinotransf and OTCace and OTCace_N and AA_kinase)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

TTA codons

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

c00006_NZ_JALF.. - Region 1 - TPP_AA_metabolism

Download region GenBank file

Location: 1 - 26,366 nt. (total: 26,366 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

TTA codons

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.

c00008_NZ_JALF.. - Region 1 - Others_HGD_unassigned

Download region GenBank file

Location: 38,128 - 78,266 nt. (total: 40,139 nt) Show pHMM detection rules used

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

TTA codons

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.

c00012_NZ_JALF.. - Region 1 - Respiratory_glycerol

Download region GenBank file

Location: 2,685 - 26,897 nt. (total: 24,213 nt) Show pHMM detection rules used

Respiratory_glycerol: (DAO and Fer2_BFD and FAD_binding_2 and Fer4_8)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

c00014_NZ_JALF.. - Region 1 - Pyruvate2acetate-formate

Download region GenBank file

Location: 14,799 - 38,277 nt. (total: 23,479 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

TTA codons

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

c00019_NZ_JALF.. - Region 1 - Fumarate2succinate

Download region GenBank file

Location: 43,736 - 66,485 nt. (total: 22,750 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

TTA codons

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

c00024_NZ_JALF.. - Region 1 - NADH_dehydrogenase_I

Download region GenBank file

Location: 49,777 - 79,516 nt. (total: 29,740 nt) Show pHMM detection rules used

Region on contig edge.

NADH_dehydrogenase_I: (Oxidored_q4 and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and NADHdh and Oxidored_q3 and Oxidored_q2 and minimum(4, [Fe-2S_thioredx, Fer2_4, Fer4_7, Molybdop_Fe4S4, Molydop_binding, NADH-G_4Fe-4S_3, NADH_4Fe-4S, Proton_antipo_M, Proton_antipo_N, SLBB]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

TTA codons

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters