GCF_001461035.1_ASM146103v1_genomic - 7 region(s)

Identified primary metabolite regions

NZ_LNAM01000113 (original name was: NZ_LNAM01000113.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 109.1	Others_HGD_unassigned	Putative	30,042	50,888

NZ_LNAM01000151 (original name was: NZ_LNAM01000151.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 117.1	succinate2propionate	SCFA	15,407	40,372	Succinate to propionate B. theta	PRO	33%

NZ_LNAM01000155 (original name was: NZ_LNAM01000155.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 121.1	Rnf_complex	E-MGC	19,356	34,631	Rnf complex C. sporogenes	RNF	83%

NZ_LNAM01000157 (original name was: NZ_LNAM01000157.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 123.1	proline2aminovalerate	npAA	1	21,368	Proline to aminovalerate C. sticklandii	AMI	75%

NZ_LNAM01000158 (original name was: NZ_LNAM01000158.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 124.1	Pyruvate2acetate-formate	SCFA	1	22,140	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

NZ_LNAM01000175 (original name was: NZ_LNAM01000175.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 141.1	Others_HGD_unassigned	Putative	73,080	103,690

NZ_LNAM01000197 (original name was: NZ_LNAM01000197.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 163.1	Arginine2_Hcarbonate	Other	20,525	45,546	Arginine to hydrogen carbonate P. aeruginosa	ARG	100%

Region	Type	Class	From	To	Most similar known cluster	Similarity
Region 109.1	Others_HGD_unassigned	Putative	30,042	50,888
Region 117.1	succinate2propionate	SCFA	15,407	40,372	Succinate to propionate B. theta	PRO	33%
Region 121.1	Rnf_complex	E-MGC	19,356	34,631	Rnf complex C. sporogenes	RNF	83%
Region 123.1	proline2aminovalerate	npAA	1	21,368	Proline to aminovalerate C. sticklandii	AMI	75%
Region 124.1	Pyruvate2acetate-formate	SCFA	1	22,140	Pyruvate to acetate-formate E. coli	PFL_acetate	100%
Region 141.1	Others_HGD_unassigned	Putative	73,080	103,690
Region 163.1	Arginine2_Hcarbonate	Other	20,525	45,546	Arginine to hydrogen carbonate P. aeruginosa	ARG	100%

No primary metabolite regions were found in these records:: NZ_LNAM01000001 (original name was: NZ_LNAM01000001.1); NZ_LNAM01000002 (original name was: NZ_LNAM01000002.1); NZ_LNAM01000003 (original name was: NZ_LNAM01000003.1); NZ_LNAM01000004 (original name was: NZ_LNAM01000004.1); NZ_LNAM01000005 (original name was: NZ_LNAM01000005.1); NZ_LNAM01000006 (original name was: NZ_LNAM01000006.1); NZ_LNAM01000007 (original name was: NZ_LNAM01000007.1); NZ_LNAM01000008 (original name was: NZ_LNAM01000008.1); NZ_LNAM01000009 (original name was: NZ_LNAM01000009.1); NZ_LNAM01000010 (original name was: NZ_LNAM01000010.1); NZ_LNAM01000011 (original name was: NZ_LNAM01000011.1); NZ_LNAM01000012 (original name was: NZ_LNAM01000012.1); NZ_LNAM01000013 (original name was: NZ_LNAM01000013.1); NZ_LNAM01000014 (original name was: NZ_LNAM01000014.1); NZ_LNAM01000015 (original name was: NZ_LNAM01000015.1); NZ_LNAM01000016 (original name was: NZ_LNAM01000016.1); NZ_LNAM01000017 (original name was: NZ_LNAM01000017.1); NZ_LNAM01000018 (original name was: NZ_LNAM01000018.1); NZ_LNAM01000019 (original name was: NZ_LNAM01000019.1); NZ_LNAM01000020 (original name was: NZ_LNAM01000020.1); NZ_LNAM01000021 (original name was: NZ_LNAM01000021.1); NZ_LNAM01000022 (original name was: NZ_LNAM01000022.1); NZ_LNAM01000023 (original name was: NZ_LNAM01000023.1); NZ_LNAM01000024 (original name was: NZ_LNAM01000024.1); NZ_LNAM01000025 (original name was: NZ_LNAM01000025.1); NZ_LNAM01000026 (original name was: NZ_LNAM01000026.1); NZ_LNAM01000027 (original name was: NZ_LNAM01000027.1); NZ_LNAM01000028 (original name was: NZ_LNAM01000028.1); NZ_LNAM01000029 (original name was: NZ_LNAM01000029.1); NZ_LNAM01000030 (original name was: NZ_LNAM01000030.1); NZ_LNAM01000031 (original name was: NZ_LNAM01000031.1); NZ_LNAM01000032 (original name was: NZ_LNAM01000032.1); NZ_LNAM01000033 (original name was: NZ_LNAM01000033.1); NZ_LNAM01000034 (original name was: NZ_LNAM01000034.1); NZ_LNAM01000035 (original name was: NZ_LNAM01000035.1); NZ_LNAM01000036 (original name was: NZ_LNAM01000036.1); NZ_LNAM01000037 (original name was: NZ_LNAM01000037.1); NZ_LNAM01000038 (original name was: NZ_LNAM01000038.1); NZ_LNAM01000039 (original name was: NZ_LNAM01000039.1); NZ_LNAM01000040 (original name was: NZ_LNAM01000040.1); NZ_LNAM01000041 (original name was: NZ_LNAM01000041.1); NZ_LNAM01000042 (original name was: NZ_LNAM01000042.1); NZ_LNAM01000043 (original name was: NZ_LNAM01000043.1); NZ_LNAM01000044 (original name was: NZ_LNAM01000044.1); NZ_LNAM01000045 (original name was: NZ_LNAM01000045.1); NZ_LNAM01000046 (original name was: NZ_LNAM01000046.1); NZ_LNAM01000047 (original name was: NZ_LNAM01000047.1); NZ_LNAM01000048 (original name was: NZ_LNAM01000048.1); NZ_LNAM01000049 (original name was: NZ_LNAM01000049.1); NZ_LNAM01000050 (original name was: NZ_LNAM01000050.1); NZ_LNAM01000051 (original name was: NZ_LNAM01000051.1); NZ_LNAM01000052 (original name was: NZ_LNAM01000052.1); NZ_LNAM01000053 (original name was: NZ_LNAM01000053.1); NZ_LNAM01000054 (original name was: NZ_LNAM01000054.1); NZ_LNAM01000055 (original name was: NZ_LNAM01000055.1); NZ_LNAM01000056 (original name was: NZ_LNAM01000056.1); NZ_LNAM01000057 (original name was: NZ_LNAM01000057.1); NZ_LNAM01000058 (original name was: NZ_LNAM01000058.1); NZ_LNAM01000059 (original name was: NZ_LNAM01000059.1); NZ_LNAM01000060 (original name was: NZ_LNAM01000060.1); NZ_LNAM01000061 (original name was: NZ_LNAM01000061.1); NZ_LNAM01000062 (original name was: NZ_LNAM01000062.1); NZ_LNAM01000063 (original name was: NZ_LNAM01000063.1); NZ_LNAM01000064 (original name was: NZ_LNAM01000064.1); NZ_LNAM01000065 (original name was: NZ_LNAM01000065.1); NZ_LNAM01000066 (original name was: NZ_LNAM01000066.1); NZ_LNAM01000067 (original name was: NZ_LNAM01000067.1); NZ_LNAM01000068 (original name was: NZ_LNAM01000068.1); NZ_LNAM01000069 (original name was: NZ_LNAM01000069.1); NZ_LNAM01000070 (original name was: NZ_LNAM01000070.1); NZ_LNAM01000071 (original name was: NZ_LNAM01000071.1); NZ_LNAM01000072 (original name was: NZ_LNAM01000072.1); NZ_LNAM01000073 (original name was: NZ_LNAM01000073.1); NZ_LNAM01000074 (original name was: NZ_LNAM01000074.1); NZ_LNAM01000075 (original name was: NZ_LNAM01000075.1); NZ_LNAM01000076 (original name was: NZ_LNAM01000076.1); NZ_LNAM01000077 (original name was: NZ_LNAM01000077.1); NZ_LNAM01000078 (original name was: NZ_LNAM01000078.1); NZ_LNAM01000079 (original name was: NZ_LNAM01000079.1); NZ_LNAM01000080 (original name was: NZ_LNAM01000080.1); NZ_LNAM01000081 (original name was: NZ_LNAM01000081.1); NZ_LNAM01000082 (original name was: NZ_LNAM01000082.1); NZ_LNAM01000083 (original name was: NZ_LNAM01000083.1); NZ_LNAM01000084 (original name was: NZ_LNAM01000084.1); NZ_LNAM01000085 (original name was: NZ_LNAM01000085.1); NZ_LNAM01000086 (original name was: NZ_LNAM01000086.1); NZ_LNAM01000087 (original name was: NZ_LNAM01000087.1); NZ_LNAM01000088 (original name was: NZ_LNAM01000088.1); NZ_LNAM01000089 (original name was: NZ_LNAM01000089.1); NZ_LNAM01000090 (original name was: NZ_LNAM01000090.1); NZ_LNAM01000091 (original name was: NZ_LNAM01000091.1); NZ_LNAM01000092 (original name was: NZ_LNAM01000092.1); NZ_LNAM01000093 (original name was: NZ_LNAM01000093.1); NZ_LNAM01000094 (original name was: NZ_LNAM01000094.1); NZ_LNAM01000095 (original name was: NZ_LNAM01000095.1); NZ_LNAM01000096 (original name was: NZ_LNAM01000096.1); NZ_LNAM01000097 (original name was: NZ_LNAM01000097.1); NZ_LNAM01000098 (original name was: NZ_LNAM01000098.1); NZ_LNAM01000099 (original name was: NZ_LNAM01000099.1); NZ_LNAM01000100 (original name was: NZ_LNAM01000100.1); NZ_LNAM01000101 (original name was: NZ_LNAM01000101.1); NZ_LNAM01000102 (original name was: NZ_LNAM01000102.1); NZ_LNAM01000103 (original name was: NZ_LNAM01000103.1); NZ_LNAM01000104 (original name was: NZ_LNAM01000104.1); NZ_LNAM01000105 (original name was: NZ_LNAM01000105.1); NZ_LNAM01000106 (original name was: NZ_LNAM01000106.1); NZ_LNAM01000107 (original name was: NZ_LNAM01000107.1); NZ_LNAM01000112 (original name was: NZ_LNAM01000112.1); NZ_LNAM01000124 (original name was: NZ_LNAM01000124.1); NZ_LNAM01000135 (original name was: NZ_LNAM01000135.1); NZ_LNAM01000146 (original name was: NZ_LNAM01000146.1); NZ_LNAM01000147 (original name was: NZ_LNAM01000147.1); NZ_LNAM01000148 (original name was: NZ_LNAM01000148.1); NZ_LNAM01000149 (original name was: NZ_LNAM01000149.1); NZ_LNAM01000150 (original name was: NZ_LNAM01000150.1); NZ_LNAM01000152 (original name was: NZ_LNAM01000152.1); NZ_LNAM01000153 (original name was: NZ_LNAM01000153.1); NZ_LNAM01000154 (original name was: NZ_LNAM01000154.1); NZ_LNAM01000156 (original name was: NZ_LNAM01000156.1); NZ_LNAM01000159 (original name was: NZ_LNAM01000159.1); NZ_LNAM01000160 (original name was: NZ_LNAM01000160.1); NZ_LNAM01000161 (original name was: NZ_LNAM01000161.1); NZ_LNAM01000162 (original name was: NZ_LNAM01000162.1); NZ_LNAM01000163 (original name was: NZ_LNAM01000163.1); NZ_LNAM01000164 (original name was: NZ_LNAM01000164.1); NZ_LNAM01000165 (original name was: NZ_LNAM01000165.1); NZ_LNAM01000166 (original name was: NZ_LNAM01000166.1); NZ_LNAM01000167 (original name was: NZ_LNAM01000167.1); NZ_LNAM01000168 (original name was: NZ_LNAM01000168.1); NZ_LNAM01000169 (original name was: NZ_LNAM01000169.1); NZ_LNAM01000170 (original name was: NZ_LNAM01000170.1); NZ_LNAM01000171 (original name was: NZ_LNAM01000171.1); NZ_LNAM01000172 (original name was: NZ_LNAM01000172.1); NZ_LNAM01000173 (original name was: NZ_LNAM01000173.1); NZ_LNAM01000174 (original name was: NZ_LNAM01000174.1); NZ_LNAM01000176 (original name was: NZ_LNAM01000176.1); NZ_LNAM01000177 (original name was: NZ_LNAM01000177.1); NZ_LNAM01000178 (original name was: NZ_LNAM01000178.1); NZ_LNAM01000179 (original name was: NZ_LNAM01000179.1); NZ_LNAM01000180 (original name was: NZ_LNAM01000180.1); NZ_LNAM01000181 (original name was: NZ_LNAM01000181.1); NZ_LNAM01000182 (original name was: NZ_LNAM01000182.1); NZ_LNAM01000183 (original name was: NZ_LNAM01000183.1); NZ_LNAM01000184 (original name was: NZ_LNAM01000184.1); NZ_LNAM01000185 (original name was: NZ_LNAM01000185.1); NZ_LNAM01000186 (original name was: NZ_LNAM01000186.1); NZ_LNAM01000187 (original name was: NZ_LNAM01000187.1); NZ_LNAM01000188 (original name was: NZ_LNAM01000188.1); NZ_LNAM01000189 (original name was: NZ_LNAM01000189.1); NZ_LNAM01000190 (original name was: NZ_LNAM01000190.1); NZ_LNAM01000191 (original name was: NZ_LNAM01000191.1); NZ_LNAM01000192 (original name was: NZ_LNAM01000192.1); NZ_LNAM01000193 (original name was: NZ_LNAM01000193.1); NZ_LNAM01000194 (original name was: NZ_LNAM01000194.1); NZ_LNAM01000195 (original name was: NZ_LNAM01000195.1); NZ_LNAM01000196 (original name was: NZ_LNAM01000196.1); NZ_LNAM01000198 (original name was: NZ_LNAM01000198.1); NZ_LNAM01000199 (original name was: NZ_LNAM01000199.1); NZ_LNAM01000200 (original name was: NZ_LNAM01000200.1); NZ_LNAM01000201 (original name was: NZ_LNAM01000201.1); NZ_LNAM01000202 (original name was: NZ_LNAM01000202.1); NZ_LNAM01000203 (original name was: NZ_LNAM01000203.1); NZ_LNAM01000204 (original name was: NZ_LNAM01000204.1); NZ_LNAM01000205 (original name was: NZ_LNAM01000205.1); NZ_LNAM01000206 (original name was: NZ_LNAM01000206.1); NZ_LNAM01000207 (original name was: NZ_LNAM01000207.1); NZ_LNAM01000208 (original name was: NZ_LNAM01000208.1); NZ_LNAM01000209 (original name was: NZ_LNAM01000209.1); NZ_LNAM01000210 (original name was: NZ_LNAM01000210.1); NZ_LNAM01000211 (original name was: NZ_LNAM01000211.1); NZ_LNAM01000212 (original name was: NZ_LNAM01000212.1); NZ_LNAM01000213 (original name was: NZ_LNAM01000213.1); NZ_LNAM01000214 (original name was: NZ_LNAM01000214.1); NZ_LNAM01000215 (original name was: NZ_LNAM01000215.1); NZ_LNAM01000216 (original name was: NZ_LNAM01000216.1); NZ_LNAM01000217 (original name was: NZ_LNAM01000217.1); NZ_LNAM01000218 (original name was: NZ_LNAM01000218.1); NZ_LNAM01000219 (original name was: NZ_LNAM01000219.1); NZ_LNAM01000220 (original name was: NZ_LNAM01000220.1); NZ_LNAM01000221 (original name was: NZ_LNAM01000221.1); NZ_LNAM01000222 (original name was: NZ_LNAM01000222.1); NZ_LNAM01000223 (original name was: NZ_LNAM01000223.1); NZ_LNAM01000224 (original name was: NZ_LNAM01000224.1); NZ_LNAM01000225 (original name was: NZ_LNAM01000225.1); NZ_LNAM01000226 (original name was: NZ_LNAM01000226.1); NZ_LNAM01000227 (original name was: NZ_LNAM01000227.1); NZ_LNAM01000228 (original name was: NZ_LNAM01000228.1); NZ_LNAM01000229 (original name was: NZ_LNAM01000229.1)

Compact view

c00109_NZ_LNAM.. - Region 1 - Others_HGD_unassigned

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Location: 30,042 - 50,888 nt. (total: 20,847 nt) Show pHMM detection rules used

Region on contig edge.

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00117_NZ_LNAM.. - Region 1 - succinate2propionate

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Location: 15,407 - 40,372 nt. (total: 24,966 nt) Show pHMM detection rules used

Region on contig edge.

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00121_NZ_LNAM.. - Region 1 - Rnf_complex

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Location: 19,356 - 34,631 nt. (total: 15,276 nt) Show pHMM detection rules used

Region on contig edge.

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00123_NZ_LNAM.. - Region 1 - proline2aminovalerate

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Location: 1 - 21,368 nt. (total: 21,368 nt) Show pHMM detection rules used

Region on contig edge.

proline2aminovalerate: (Proline_reductase and (Pro_racemase or GRDB) and not ACP_syn_III_C)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00124_NZ_LNAM.. - Region 1 - Pyruvate2acetate-formate

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Location: 1 - 22,140 nt. (total: 22,140 nt) Show pHMM detection rules used

Region on contig edge.

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00141_NZ_LNAM.. - Region 1 - Others_HGD_unassigned

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Location: 73,080 - 103,690 nt. (total: 30,611 nt) Show pHMM detection rules used

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00163_NZ_LNAM.. - Region 1 - Arginine2_Hcarbonate

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Location: 20,525 - 45,546 nt. (total: 25,022 nt) Show pHMM detection rules used

Arginine2_Hcarbonate: (Amidinotransf and OTCace and OTCace_N and AA_kinase)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters