GCF_000482365.1_ASM48236v1_genomic - 5 region(s)

Identified primary metabolite regions

NZ_KI535307.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 2.1	OD_fatty_acids	Putative	33,765	70,850	porA C. sporogenes	POR	60%

NZ_KI535308.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 3.1	Lysine_degradation,acetate2butyrate	SCFA	82,959	117,715	Lysine degradation C. sticklandii	LYS	46%

NZ_KI535309.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 4.1	Fumarate2succinate	SCFA	1	14,359	Fumarate to succinate B. thetaiotaomicron	SUC	100%

NZ_AXVC01000023 (original name was: NZ_AXVC01000023.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 9.1	PFOR_II_pathway	SCFA	24,812	48,441	PFOR II pathway B. thetaiotaomicron	PFORII	100%

NZ_AXVC01000024 (original name was: NZ_AXVC01000024.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 10.1	Rnf_complex,aminobutyrate2Butyrate	SCFA	1	26,503	Rnf complex C. sporogenes	RNF	66%

No primary metabolite regions were found in these records:: NZ_KI535306.1; NZ_AXVC01000018 (original name was: NZ_AXVC01000018.1); NZ_KI535310.1; NZ_AXVC01000021 (original name was: NZ_AXVC01000021.1); NZ_AXVC01000022 (original name was: NZ_AXVC01000022.1); NZ_AXVC01000025 (original name was: NZ_AXVC01000025.1); NZ_AXVC01000026 (original name was: NZ_AXVC01000026.1); NZ_AXVC01000027 (original name was: NZ_AXVC01000027.1); NZ_AXVC01000028 (original name was: NZ_AXVC01000028.1); NZ_AXVC01000029 (original name was: NZ_AXVC01000029.1); NZ_AXVC01000030 (original name was: NZ_AXVC01000030.1); NZ_AXVC01000031 (original name was: NZ_AXVC01000031.1); NZ_AXVC01000032 (original name was: NZ_AXVC01000032.1); NZ_AXVC01000033 (original name was: NZ_AXVC01000033.1); NZ_AXVC01000034 (original name was: NZ_AXVC01000034.1); NZ_KI535311.1; NZ_AXVC01000037 (original name was: NZ_AXVC01000037.1); NZ_AXVC01000038 (original name was: NZ_AXVC01000038.1); NZ_AXVC01000039 (original name was: NZ_AXVC01000039.1); NZ_AXVC01000040 (original name was: NZ_AXVC01000040.1); NZ_AXVC01000041 (original name was: NZ_AXVC01000041.1); NZ_AXVC01000042 (original name was: NZ_AXVC01000042.1); NZ_AXVC01000043 (original name was: NZ_AXVC01000043.1); NZ_AXVC01000044 (original name was: NZ_AXVC01000044.1)

Compact view

NZ_KI535307.1 - Region 1 - OD_fatty_acids

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Location: 33,765 - 70,850 nt. (total: 37,086 nt) Show pHMM detection rules used

OD_fatty_acids: (minimum(1, [PFOR_II, POR, POR_N]) and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (Gly_radical_scatole or Gly_radical or Gly_430_pcre or Gly_8-9_TMA))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

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NZ_KI535308.1 - Region 1 - Lysine_degradation,acetate2butyrate

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Location: 82,959 - 117,715 nt. (total: 34,757 nt) Show pHMM detection rules used

Lysine_degradation: (minimum(1, [AcetylCoA_hydro, CoA_trans, HBT, Lys-AminoMut_A]) and BKACE and LAM_C and Radical_SAM and B12-binding and OAM_dimer)
acetate2butyrate: (not (POR or POR_N or PFOR_II) and minimum(4, [Acyl-CoA_dh_1, Acyl-CoA_dh_2, ECH_2, ETF, ETF_alpha, HCDH_N, Thiolase_N, ketoacyl-synt]) and HCDH and minimum(1, [EC1_2-faecali, ECH1_Enoyl_CoA_DH1, ECH1_Enoyl_CoA_DH2, ECH1_Enoyl_CoA_DH3, ECH1_Enoyl_CoA_DH4, Thiolase_C]))

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core biosynthetic genes

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transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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KnownClusterBlast

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NZ_KI535309.1 - Region 1 - Fumarate2succinate

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Location: 1 - 14,359 nt. (total: 14,359 nt) Show pHMM detection rules used

Region on contig edge.

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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KnownClusterBlast

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c00009_NZ_AXVC.. - Region 1 - PFOR_II_pathway

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Location: 24,812 - 48,441 nt. (total: 23,630 nt) Show pHMM detection rules used

PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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KnownClusterBlast

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c00010_NZ_AXVC.. - Region 1 - Rnf_complex,aminobutyrate2Butyrate

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Location: 1 - 26,503 nt. (total: 26,503 nt) Show pHMM detection rules used

Region on contig edge.

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))
aminobutyrate2Butyrate: (minimum(2, [AcetylCoA_hyd_C, AcetylCoA_hydro, Fe-ADH, Fe-ADH_2, HBT, Mal_decarbox_Al]) and cds(HpaB_N and HpaB) and not (LAM_C or BKACE))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters