GCF_000769135.1_ASM76913v1_genomic - 6 region(s)

Identified primary metabolite regions

NZ_JQZW01000012 (original name was: NZ_JQZW01000012.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 4.1	Rnf_complex	E-MGC	1,972	27,157	Rnf complex C. sporogenes	RNF	66%

NZ_JQZW01000013 (original name was: NZ_JQZW01000013.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 5.1	porA	SCFA	24,612	47,574	porA C. sporogenes	POR	60%

NZ_JQZW01000002 (original name was: NZ_JQZW01000002.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 11.1	Fumarate2succinate	SCFA	72,268	95,707	Fumarate to succinate B. thetaiotaomicron	SUC	100%
Region 11.2	aminobutyrate2Butyrate	SCFA	316,185	340,500	Aminobutyrate to butyrate C. pasteurianum	AMINOBUT	20%

NZ_JQZW01000007 (original name was: NZ_JQZW01000007.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 15.1	Pyruvate2acetate-formate	SCFA	437	23,411	Pyruvate to acetate-formate B. thetaiotaomicron	PFL_acetate	100%

NZ_JQZW01000008 (original name was: NZ_JQZW01000008.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 16.1	TPP_fatty_acids	Putative	272,014	296,091

No primary metabolite regions were found in these records:: NZ_JQZW01000001 (original name was: NZ_JQZW01000001.1); NZ_JQZW01000010 (original name was: NZ_JQZW01000010.1); NZ_JQZW01000011 (original name was: NZ_JQZW01000011.1); NZ_JQZW01000014 (original name was: NZ_JQZW01000014.1); NZ_JQZW01000015 (original name was: NZ_JQZW01000015.1); NZ_JQZW01000017 (original name was: NZ_JQZW01000017.1); NZ_JQZW01000018 (original name was: NZ_JQZW01000018.1); NZ_JQZW01000019 (original name was: NZ_JQZW01000019.1); NZ_JQZW01000003 (original name was: NZ_JQZW01000003.1); NZ_JQZW01000005 (original name was: NZ_JQZW01000005.1); NZ_JQZW01000006 (original name was: NZ_JQZW01000006.1); NZ_JQZW01000009 (original name was: NZ_JQZW01000009.1)

Compact view

c00004_NZ_JQZW.. - Region 1 - Rnf_complex

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Location: 1,972 - 27,157 nt. (total: 25,186 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

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c00005_NZ_JQZW.. - Region 1 - porA

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Location: 24,612 - 47,574 nt. (total: 22,963 nt) Show pHMM detection rules used

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

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c00011_NZ_JQZW.. - Region 1 - Fumarate2succinate

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Location: 72,268 - 95,707 nt. (total: 23,440 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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c00011_NZ_JQZW.. - Region 2 - aminobutyrate2Butyrate

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Location: 316,185 - 340,500 nt. (total: 24,316 nt) Show pHMM detection rules used

aminobutyrate2Butyrate: (minimum(2, [AcetylCoA_hyd_C, AcetylCoA_hydro, Fe-ADH, Fe-ADH_2, HBT, Mal_decarbox_Al]) and cds(HpaB_N and HpaB) and not (LAM_C or BKACE))

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c00015_NZ_JQZW.. - Region 1 - Pyruvate2acetate-formate

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Location: 437 - 23,411 nt. (total: 22,975 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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c00016_NZ_JQZW.. - Region 1 - TPP_fatty_acids

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Location: 272,014 - 296,091 nt. (total: 24,078 nt) Show pHMM detection rules used

TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))

Legend:

core biosynthetic genes

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regulatory genes

resistance genes

encapsulation genes

electron transport genes

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