GCF_000730585.1_ASM73058v1_genomic - 14 region(s)

Identified primary metabolite regions

NZ_BBIR01000068 (original name was: NZ_BBIR01000068.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 91.1	fatty_acids-unassigned	Putative	1,019	23,069	Acetate to butyrate C. sporogenes	BUT	33%
Region 91.2	Formate_dehydrogenase	E-MGC	34,747	50,249	Formate dehydrogenase E. coli	FORM	100%

NZ_BBIR01000054 (original name was: NZ_BBIR01000054.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 105.1	Glycine_cleavage	Other	1	17,835	Glycine cleavage C. sticklandii	GLY	60%

NZ_BBIR01000050 (original name was: NZ_BBIR01000050.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 109.1	TPP_fatty_acids,fatty_acids-unassigned	Putative	1	40,926	Acetate to butyrate C. sporogenes	BUT	50%

NZ_BBIR01000046 (original name was: NZ_BBIR01000046.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 113.1	Putrescine2spermidine	Aliphatic_amine	1	13,821	Putrescine2spermidine E. rectale	SPRM	40%

NZ_BBIR01000035 (original name was: NZ_BBIR01000035.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 124.1	TPP_fatty_acids	Putative	16,580	51,889

NZ_BBIR01000034 (original name was: NZ_BBIR01000034.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 125.1	TPP_AA_metabolism	Putative	94,948	111,176

NZ_BBIR01000033 (original name was: NZ_BBIR01000033.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 126.1	NADH_dehydrogenase_I	E-MGC	27,543	62,513	NADH dehydrogenase I E. coli	NADHD	100%

NZ_BBIR01000020 (original name was: NZ_BBIR01000020.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 139.1	Fumarate2succinate	SCFA	88,893	111,381	Fumarate2succinate suc dh E. coli	SUC	100%

NZ_BBIR01000013 (original name was: NZ_BBIR01000013.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 146.1	fatty_acids-unassigned	Putative	22,396	65,837

NZ_BBIR01000012 (original name was: NZ_BBIR01000012.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 147.1	OD_fatty_acids	Putative	29,088	69,080

NZ_BBIR01000006 (original name was: NZ_BBIR01000006.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 153.1	Glycine_cleavage	Other	104,232	128,720	Glycine cleavage C. sticklandii	GLY	60%

NZ_BBIR01000003 (original name was: NZ_BBIR01000003.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 156.1	Glycine_cleavage,Arginine2_Hcarbonate	Other	1	25,078	Arginine to hydrogen carbonate P. aeruginosa	ARG	100%

NZ_BBIR01000002 (original name was: NZ_BBIR01000002.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 157.1	histidine2glutamate_hutHGIU_operon	Other	177,099	209,799	Histidine to glutamate K. pneumoniae	GLU	80%

No primary metabolite regions were found in these records:: NZ_BBIR01000158 (original name was: NZ_BBIR01000158.1); NZ_BBIR01000157 (original name was: NZ_BBIR01000157.1); NZ_BBIR01000156 (original name was: NZ_BBIR01000156.1); NZ_BBIR01000155 (original name was: NZ_BBIR01000155.1); NZ_BBIR01000154 (original name was: NZ_BBIR01000154.1); NZ_BBIR01000153 (original name was: NZ_BBIR01000153.1); NZ_BBIR01000152 (original name was: NZ_BBIR01000152.1); NZ_BBIR01000151 (original name was: NZ_BBIR01000151.1); NZ_BBIR01000150 (original name was: NZ_BBIR01000150.1); NZ_BBIR01000149 (original name was: NZ_BBIR01000149.1); NZ_BBIR01000148 (original name was: NZ_BBIR01000148.1); NZ_BBIR01000147 (original name was: NZ_BBIR01000147.1); NZ_BBIR01000146 (original name was: NZ_BBIR01000146.1); NZ_BBIR01000145 (original name was: NZ_BBIR01000145.1); NZ_BBIR01000144 (original name was: NZ_BBIR01000144.1); NZ_BBIR01000143 (original name was: NZ_BBIR01000143.1); NZ_BBIR01000142 (original name was: NZ_BBIR01000142.1); NZ_BBIR01000141 (original name was: NZ_BBIR01000141.1); NZ_BBIR01000140 (original name was: NZ_BBIR01000140.1); NZ_BBIR01000139 (original name was: NZ_BBIR01000139.1); NZ_BBIR01000138 (original name was: NZ_BBIR01000138.1); NZ_BBIR01000137 (original name was: NZ_BBIR01000137.1); NZ_BBIR01000136 (original name was: NZ_BBIR01000136.1); NZ_BBIR01000135 (original name was: NZ_BBIR01000135.1); NZ_BBIR01000134 (original name was: NZ_BBIR01000134.1); NZ_BBIR01000133 (original name was: NZ_BBIR01000133.1); NZ_BBIR01000132 (original name was: NZ_BBIR01000132.1); NZ_BBIR01000131 (original name was: NZ_BBIR01000131.1); NZ_BBIR01000130 (original name was: NZ_BBIR01000130.1); NZ_BBIR01000129 (original name was: NZ_BBIR01000129.1); NZ_BBIR01000128 (original name was: NZ_BBIR01000128.1); NZ_BBIR01000127 (original name was: NZ_BBIR01000127.1); NZ_BBIR01000126 (original name was: NZ_BBIR01000126.1); NZ_BBIR01000125 (original name was: NZ_BBIR01000125.1); NZ_BBIR01000124 (original name was: NZ_BBIR01000124.1); NZ_BBIR01000123 (original name was: NZ_BBIR01000123.1); NZ_BBIR01000122 (original name was: NZ_BBIR01000122.1); NZ_BBIR01000121 (original name was: NZ_BBIR01000121.1); NZ_BBIR01000120 (original name was: NZ_BBIR01000120.1); NZ_BBIR01000119 (original name was: NZ_BBIR01000119.1); NZ_BBIR01000118 (original name was: NZ_BBIR01000118.1); NZ_BBIR01000117 (original name was: NZ_BBIR01000117.1); NZ_BBIR01000116 (original name was: NZ_BBIR01000116.1); NZ_BBIR01000115 (original name was: NZ_BBIR01000115.1); NZ_BBIR01000114 (original name was: NZ_BBIR01000114.1); NZ_BBIR01000113 (original name was: NZ_BBIR01000113.1); NZ_BBIR01000112 (original name was: NZ_BBIR01000112.1); NZ_BBIR01000111 (original name was: NZ_BBIR01000111.1); NZ_BBIR01000110 (original name was: NZ_BBIR01000110.1); NZ_BBIR01000109 (original name was: NZ_BBIR01000109.1); NZ_BBIR01000108 (original name was: NZ_BBIR01000108.1); NZ_BBIR01000107 (original name was: NZ_BBIR01000107.1); NZ_BBIR01000106 (original name was: NZ_BBIR01000106.1); NZ_BBIR01000105 (original name was: NZ_BBIR01000105.1); NZ_BBIR01000104 (original name was: NZ_BBIR01000104.1); NZ_BBIR01000103 (original name was: NZ_BBIR01000103.1); NZ_BBIR01000102 (original name was: NZ_BBIR01000102.1); NZ_BBIR01000101 (original name was: NZ_BBIR01000101.1); NZ_BBIR01000100 (original name was: NZ_BBIR01000100.1); NZ_BBIR01000099 (original name was: NZ_BBIR01000099.1); NZ_BBIR01000098 (original name was: NZ_BBIR01000098.1); NZ_BBIR01000097 (original name was: NZ_BBIR01000097.1); NZ_BBIR01000096 (original name was: NZ_BBIR01000096.1); NZ_BBIR01000095 (original name was: NZ_BBIR01000095.1); NZ_BBIR01000094 (original name was: NZ_BBIR01000094.1); NZ_BBIR01000093 (original name was: NZ_BBIR01000093.1); NZ_BBIR01000092 (original name was: NZ_BBIR01000092.1); NZ_BBIR01000091 (original name was: NZ_BBIR01000091.1); NZ_BBIR01000090 (original name was: NZ_BBIR01000090.1); NZ_BBIR01000089 (original name was: NZ_BBIR01000089.1); NZ_BBIR01000088 (original name was: NZ_BBIR01000088.1); NZ_BBIR01000087 (original name was: NZ_BBIR01000087.1); NZ_BBIR01000086 (original name was: NZ_BBIR01000086.1); NZ_BBIR01000085 (original name was: NZ_BBIR01000085.1); NZ_BBIR01000084 (original name was: NZ_BBIR01000084.1); NZ_BBIR01000083 (original name was: NZ_BBIR01000083.1); NZ_BBIR01000082 (original name was: NZ_BBIR01000082.1); NZ_BBIR01000081 (original name was: NZ_BBIR01000081.1); NZ_BBIR01000080 (original name was: NZ_BBIR01000080.1); NZ_BBIR01000079 (original name was: NZ_BBIR01000079.1); NZ_BBIR01000078 (original name was: NZ_BBIR01000078.1); NZ_BBIR01000077 (original name was: NZ_BBIR01000077.1); NZ_BBIR01000076 (original name was: NZ_BBIR01000076.1); NZ_BBIR01000075 (original name was: NZ_BBIR01000075.1); NZ_BBIR01000074 (original name was: NZ_BBIR01000074.1); NZ_BBIR01000073 (original name was: NZ_BBIR01000073.1); NZ_BBIR01000072 (original name was: NZ_BBIR01000072.1); NZ_BBIR01000071 (original name was: NZ_BBIR01000071.1); NZ_BBIR01000070 (original name was: NZ_BBIR01000070.1); NZ_BBIR01000069 (original name was: NZ_BBIR01000069.1); NZ_BBIR01000067 (original name was: NZ_BBIR01000067.1); NZ_BBIR01000066 (original name was: NZ_BBIR01000066.1); NZ_BBIR01000065 (original name was: NZ_BBIR01000065.1); NZ_BBIR01000064 (original name was: NZ_BBIR01000064.1); NZ_BBIR01000063 (original name was: NZ_BBIR01000063.1); NZ_BBIR01000062 (original name was: NZ_BBIR01000062.1); NZ_BBIR01000061 (original name was: NZ_BBIR01000061.1); NZ_BBIR01000060 (original name was: NZ_BBIR01000060.1); NZ_BBIR01000059 (original name was: NZ_BBIR01000059.1); NZ_BBIR01000058 (original name was: NZ_BBIR01000058.1); NZ_BBIR01000057 (original name was: NZ_BBIR01000057.1); NZ_BBIR01000056 (original name was: NZ_BBIR01000056.1); NZ_BBIR01000055 (original name was: NZ_BBIR01000055.1); NZ_BBIR01000053 (original name was: NZ_BBIR01000053.1); NZ_BBIR01000052 (original name was: NZ_BBIR01000052.1); NZ_BBIR01000051 (original name was: NZ_BBIR01000051.1); NZ_BBIR01000049 (original name was: NZ_BBIR01000049.1); NZ_BBIR01000048 (original name was: NZ_BBIR01000048.1); NZ_BBIR01000047 (original name was: NZ_BBIR01000047.1); NZ_BBIR01000045 (original name was: NZ_BBIR01000045.1); NZ_BBIR01000044 (original name was: NZ_BBIR01000044.1); NZ_BBIR01000043 (original name was: NZ_BBIR01000043.1); NZ_BBIR01000042 (original name was: NZ_BBIR01000042.1); NZ_BBIR01000041 (original name was: NZ_BBIR01000041.1); NZ_BBIR01000040 (original name was: NZ_BBIR01000040.1); NZ_BBIR01000039 (original name was: NZ_BBIR01000039.1); NZ_BBIR01000038 (original name was: NZ_BBIR01000038.1); NZ_BBIR01000037 (original name was: NZ_BBIR01000037.1); NZ_BBIR01000036 (original name was: NZ_BBIR01000036.1); NZ_BBIR01000032 (original name was: NZ_BBIR01000032.1); NZ_BBIR01000031 (original name was: NZ_BBIR01000031.1); NZ_BBIR01000030 (original name was: NZ_BBIR01000030.1); NZ_BBIR01000029 (original name was: NZ_BBIR01000029.1); NZ_BBIR01000028 (original name was: NZ_BBIR01000028.1); NZ_BBIR01000027 (original name was: NZ_BBIR01000027.1); NZ_BBIR01000026 (original name was: NZ_BBIR01000026.1); NZ_BBIR01000025 (original name was: NZ_BBIR01000025.1); NZ_BBIR01000024 (original name was: NZ_BBIR01000024.1); NZ_BBIR01000023 (original name was: NZ_BBIR01000023.1); NZ_BBIR01000022 (original name was: NZ_BBIR01000022.1); NZ_BBIR01000021 (original name was: NZ_BBIR01000021.1); NZ_BBIR01000019 (original name was: NZ_BBIR01000019.1); NZ_BBIR01000018 (original name was: NZ_BBIR01000018.1); NZ_BBIR01000017 (original name was: NZ_BBIR01000017.1); NZ_BBIR01000016 (original name was: NZ_BBIR01000016.1); NZ_BBIR01000015 (original name was: NZ_BBIR01000015.1); NZ_BBIR01000014 (original name was: NZ_BBIR01000014.1); NZ_BBIR01000011 (original name was: NZ_BBIR01000011.1); NZ_BBIR01000010 (original name was: NZ_BBIR01000010.1); NZ_BBIR01000009 (original name was: NZ_BBIR01000009.1); NZ_BBIR01000008 (original name was: NZ_BBIR01000008.1); NZ_BBIR01000007 (original name was: NZ_BBIR01000007.1); NZ_BBIR01000005 (original name was: NZ_BBIR01000005.1); NZ_BBIR01000004 (original name was: NZ_BBIR01000004.1); NZ_BBIR01000001 (original name was: NZ_BBIR01000001.1)

Compact view

c00091_NZ_BBIR.. - Region 1 - fatty_acids-unassigned

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Location: 1,019 - 23,069 nt. (total: 22,051 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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c00091_NZ_BBIR.. - Region 2 - Formate_dehydrogenase

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Location: 34,747 - 50,249 nt. (total: 15,503 nt) Show pHMM detection rules used

Region on contig edge.

Formate_dehydrogenase: (Molybdopterin and Form-deh_trans and not (Nitr_red_bet_C or Nitr_red_alph_N) and minimum(3, [Fer4_11, Fer4_4, Molybdop_Fe4S4, Molydop_binding, Ni_hydr_CYTB]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

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c00105_NZ_BBIR.. - Region 1 - Glycine_cleavage

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Location: 1 - 17,835 nt. (total: 17,835 nt) Show pHMM detection rules used

Region on contig edge.

Glycine_cleavage: (minimum(2, [Aminotran_5, GCV_H, GCV_T, GDC-P, SoxG]) and GCV_H and GCV_T_C)

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core biosynthetic genes

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c00109_NZ_BBIR.. - Region 1 - TPP_fatty_acids,fatty_acids-unassigned

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Location: 1 - 40,926 nt. (total: 40,926 nt) Show pHMM detection rules used

Region on contig edge.

TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))
fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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c00113_NZ_BBIR.. - Region 1 - Putrescine2spermidine

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Location: 1 - 13,821 nt. (total: 13,821 nt) Show pHMM detection rules used

Region on contig edge.

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

Legend:

core biosynthetic genes

additional biosynthetic genes

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regulatory genes

resistance genes

encapsulation genes

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c00124_NZ_BBIR.. - Region 1 - TPP_fatty_acids

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Location: 16,580 - 51,889 nt. (total: 35,310 nt) Show pHMM detection rules used

TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))

Legend:

core biosynthetic genes

additional biosynthetic genes

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c00125_NZ_BBIR.. - Region 1 - TPP_AA_metabolism

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Location: 94,948 - 111,176 nt. (total: 16,229 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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core biosynthetic genes

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c00126_NZ_BBIR.. - Region 1 - NADH_dehydrogenase_I

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Location: 27,543 - 62,513 nt. (total: 34,971 nt) Show pHMM detection rules used

NADH_dehydrogenase_I: (Oxidored_q4 and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and NADHdh and Oxidored_q3 and Oxidored_q2 and minimum(4, [Fe-2S_thioredx, Fer2_4, Fer4_7, Molybdop_Fe4S4, Molydop_binding, NADH-G_4Fe-4S_3, NADH_4Fe-4S, Proton_antipo_M, Proton_antipo_N, SLBB]))

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c00139_NZ_BBIR.. - Region 1 - Fumarate2succinate

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Location: 88,893 - 111,381 nt. (total: 22,489 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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core biosynthetic genes

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c00146_NZ_BBIR.. - Region 1 - fatty_acids-unassigned

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Location: 22,396 - 65,837 nt. (total: 43,442 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

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regulatory genes

resistance genes

encapsulation genes

electron transport genes

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c00147_NZ_BBIR.. - Region 1 - OD_fatty_acids

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Location: 29,088 - 69,080 nt. (total: 39,993 nt) Show pHMM detection rules used

OD_fatty_acids: (minimum(1, [PFOR_II, POR, POR_N]) and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (Gly_radical_scatole or Gly_radical or Gly_430_pcre or Gly_8-9_TMA))

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core biosynthetic genes

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regulatory genes

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c00153_NZ_BBIR.. - Region 1 - Glycine_cleavage

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Location: 104,232 - 128,720 nt. (total: 24,489 nt) Show pHMM detection rules used

Glycine_cleavage: (minimum(2, [Aminotran_5, GCV_H, GCV_T, GDC-P, SoxG]) and GCV_H and GCV_T_C)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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c00156_NZ_BBIR.. - Region 1 - Arginine2_Hcarbonate,Glycine_cleavage

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Location: 1 - 25,078 nt. (total: 25,078 nt) Show pHMM detection rules used

Region on contig edge.

Glycine_cleavage: (minimum(2, [Aminotran_5, GCV_H, GCV_T, GDC-P, SoxG]) and GCV_H and GCV_T_C)
Arginine2_Hcarbonate: (Amidinotransf and OTCace and OTCace_N and AA_kinase)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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c00157_NZ_BBIR.. - Region 1 - histidine2glutamate_hutHGIU_operon

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Location: 177,099 - 209,799 nt. (total: 32,701 nt) Show pHMM detection rules used

histidine2glutamate_hutHGIU_operon: (minimum(3, [Amidohydro_1, Amidohydro_3, Arginase, FGase, Urocanase]) and Lyase_aromatic and Urocanase_C)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

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