GCF_003339815.1_ASM333981v1_genomic - 28 region(s)

Identified primary metabolite regions

NZ_PPTT01000001 (original name was: NZ_PPTT01000001.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 1.1	Molybdopterin_dependent_oxidoreductase	E-MGC	171	26,221	DMSO-TMAO reducatse E. coli	DMSAO-TMAO	75%
Region 1.2	Molybdopterin_dependent_oxidoreductase	E-MGC	56,416	115,617	DMSO-TMAO reducatse E. coli	DMSAO-TMAO	75%
Region 1.3	Fumarate2succinate,Flavoenzyme_lipids_catabolism	Putative	191,916	237,403

NZ_PPTT01000010 (original name was: NZ_PPTT01000010.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 2.1	Molybdopterin_dependent_oxidoreductase	E-MGC	4,449	28,408
Region 2.2	Flavoenzyme_lipids_catabolism	Putative	59,605	94,884	Carnitine caiTABCDE E. coli	CAR	33%

NZ_PPTT01000011 (original name was: NZ_PPTT01000011.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 3.1	Molybdopterin_dependent_oxidoreductase	E-MGC	98,668	117,704

NZ_PPTT01000012 (original name was: NZ_PPTT01000012.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 4.1	Molybdopterin_dependent_oxidoreductase,Ech_complex	E-MGC	32,843	86,794	Ech complex C. sp. AF08-23	ECH	100%

NZ_PPTT01000013 (original name was: NZ_PPTT01000013.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 5.1	Molybdopterin_dependent_oxidoreductase	E-MGC	34,025	58,817	DMSO-TMAO reducatse E. coli	DMSAO-TMAO	75%

NZ_PPTT01000014 (original name was: NZ_PPTT01000014.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 6.1	Others_HGD_unassigned	Putative	1	17,725	Leucine reductive branch C. sporogenes	LEU	50%
Region 6.2	Flavoenzyme_lipids_catabolism,Molybdopterin_dependent_oxidoreductase	E-MGC	57,606	97,071	Leucine reductive branch C. difficile	LEU	25%

NZ_PPTT01000015 (original name was: NZ_PPTT01000015.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 7.1	p-cresol	Aromatic	48,594	72,616	P-cresol synthesis C. difficille	PCRE	66%

NZ_PPTT01000016 (original name was: NZ_PPTT01000016.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 8.1	Molybdopterin_dependent_oxidoreductase	E-MGC	53,807	91,956	Tetrathionate to thiosulfate S. enterica	THIOS	10%

NZ_PPTT01000018 (original name was: NZ_PPTT01000018.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 10.1	Others_HGD_unassigned	Putative	56,291	82,098	NADH dehydrogenase I Bacteroides sp.	NADHD	9%

NZ_PPTT01000002 (original name was: NZ_PPTT01000002.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 12.1	Others_HGD_unassigned	Putative	126,633	151,366

NZ_PPTT01000021 (original name was: NZ_PPTT01000021.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 14.1	Molybdopterin_dependent_oxidoreductase	E-MGC	1	31,059

NZ_PPTT01000003 (original name was: NZ_PPTT01000003.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 23.1	Molybdopterin_dependent_oxidoreductase	E-MGC	16,654	49,818

NZ_PPTT01000031 (original name was: NZ_PPTT01000031.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 25.1	porA	SCFA	29,178	45,749	porA C. sporogenes	POR	60%

NZ_PPTT01000033 (original name was: NZ_PPTT01000033.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 27.1	Molybdopterin_dependent_oxidoreductase	E-MGC	1	43,494

NZ_PPTT01000034 (original name was: NZ_PPTT01000034.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 28.1	Arginine2putrescine	Aliphatic_amine	1	29,739	Arginine to hydrogen carbonate P. aeruginosa	ARG	66%

NZ_PPTT01000004 (original name was: NZ_PPTT01000004.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 34.1	Molybdopterin_dependent_oxidoreductase	E-MGC	57,861	100,976	DMSO-TMAO reducatse E. coli	DMSAO-TMAO	50%
Region 34.2	Molybdopterin_dependent_oxidoreductase	E-MGC	185,462	204,908

NZ_PPTT01000040 (original name was: NZ_PPTT01000040.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 35.1	TPP_AA_metabolism	Putative	15,192	30,484

NZ_PPTT01000044 (original name was: NZ_PPTT01000044.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 39.1	Molybdopterin_dependent_oxidoreductase	E-MGC	1	19,654

NZ_PPTT01000049 (original name was: NZ_PPTT01000049.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 44.1	Molybdopterin_dependent_oxidoreductase	E-MGC	1	12,393

NZ_PPTT01000005 (original name was: NZ_PPTT01000005.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 45.1	Arginine2_Hcarbonate	Other	47,094	70,459	Arginine to hydrogen carbonate P. aeruginosa	ARG	100%

NZ_PPTT01000050 (original name was: NZ_PPTT01000050.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 46.1	Molybdopterin_dependent_oxidoreductase	E-MGC	1	11,616

NZ_PPTT01000054 (original name was: NZ_PPTT01000054.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 50.1	Molybdopterin_dependent_oxidoreductase	E-MGC	1	9,798

NZ_PPTT01000006 (original name was: NZ_PPTT01000006.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 56.1	Molybdopterin_dependent_oxidoreductase	E-MGC	158,564	185,226

No primary metabolite regions were found in these records:: NZ_PPTT01000017 (original name was: NZ_PPTT01000017.1); NZ_PPTT01000019 (original name was: NZ_PPTT01000019.1); NZ_PPTT01000020 (original name was: NZ_PPTT01000020.1); NZ_PPTT01000022 (original name was: NZ_PPTT01000022.1); NZ_PPTT01000023 (original name was: NZ_PPTT01000023.1); NZ_PPTT01000024 (original name was: NZ_PPTT01000024.1); NZ_PPTT01000025 (original name was: NZ_PPTT01000025.1); NZ_PPTT01000026 (original name was: NZ_PPTT01000026.1); NZ_PPTT01000027 (original name was: NZ_PPTT01000027.1); NZ_PPTT01000028 (original name was: NZ_PPTT01000028.1); NZ_PPTT01000029 (original name was: NZ_PPTT01000029.1); NZ_PPTT01000030 (original name was: NZ_PPTT01000030.1); NZ_PPTT01000032 (original name was: NZ_PPTT01000032.1); NZ_PPTT01000035 (original name was: NZ_PPTT01000035.1); NZ_PPTT01000036 (original name was: NZ_PPTT01000036.1); NZ_PPTT01000037 (original name was: NZ_PPTT01000037.1); NZ_PPTT01000038 (original name was: NZ_PPTT01000038.1); NZ_PPTT01000039 (original name was: NZ_PPTT01000039.1); NZ_PPTT01000041 (original name was: NZ_PPTT01000041.1); NZ_PPTT01000042 (original name was: NZ_PPTT01000042.1); NZ_PPTT01000043 (original name was: NZ_PPTT01000043.1); NZ_PPTT01000045 (original name was: NZ_PPTT01000045.1); NZ_PPTT01000046 (original name was: NZ_PPTT01000046.1); NZ_PPTT01000047 (original name was: NZ_PPTT01000047.1); NZ_PPTT01000048 (original name was: NZ_PPTT01000048.1); NZ_PPTT01000051 (original name was: NZ_PPTT01000051.1); NZ_PPTT01000052 (original name was: NZ_PPTT01000052.1); NZ_PPTT01000053 (original name was: NZ_PPTT01000053.1); NZ_PPTT01000055 (original name was: NZ_PPTT01000055.1); NZ_PPTT01000056 (original name was: NZ_PPTT01000056.1); NZ_PPTT01000057 (original name was: NZ_PPTT01000057.1); NZ_PPTT01000058 (original name was: NZ_PPTT01000058.1); NZ_PPTT01000059 (original name was: NZ_PPTT01000059.1); NZ_PPTT01000060 (original name was: NZ_PPTT01000060.1); NZ_PPTT01000061 (original name was: NZ_PPTT01000061.1); NZ_PPTT01000062 (original name was: NZ_PPTT01000062.1); NZ_PPTT01000063 (original name was: NZ_PPTT01000063.1); NZ_PPTT01000064 (original name was: NZ_PPTT01000064.1); NZ_PPTT01000007 (original name was: NZ_PPTT01000007.1); NZ_PPTT01000008 (original name was: NZ_PPTT01000008.1); NZ_PPTT01000009 (original name was: NZ_PPTT01000009.1)

Compact view

c00001_NZ_PPTT.. - Region 1 - Molybdopterin_dependent_oxidoreductase

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Location: 171 - 26,221 nt. (total: 26,051 nt) Show pHMM detection rules used

Molybdopterin_dependent_oxidoreductase: ((DmsC and Molybdopterin and minimum(2, [Fer4_11, Fer4_4, Molybdop_Fe4S4, Molydop_binding])) or (NrfD and Molybdopterin and minimum(2, [Fer4_11, Molybdop_Fe4S4, Molydop_binding]) and not (Nitr_red_bet_C or Nitrate_red_del)))

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c00001_NZ_PPTT.. - Region 2 - Molybdopterin_dependent_oxidoreductase

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Location: 56,416 - 115,617 nt. (total: 59,202 nt) Show pHMM detection rules used

Molybdopterin_dependent_oxidoreductase: ((DmsC and Molybdopterin and minimum(2, [Fer4_11, Fer4_4, Molybdop_Fe4S4, Molydop_binding])) or (NrfD and Molybdopterin and minimum(2, [Fer4_11, Molybdop_Fe4S4, Molydop_binding]) and not (Nitr_red_bet_C or Nitrate_red_del)))

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c00001_NZ_PPTT.. - Region 3 - Flavoenzyme_lipids_catabolism,Fumarate2succinate

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Location: 191,916 - 237,403 nt. (total: 45,488 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))
Flavoenzyme_lipids_catabolism: ((cds(Pyr_redox_2 and Oxidored_FMN) or baiCD or baiH) and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis))

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c00002_NZ_PPTT.. - Region 1 - Molybdopterin_dependent_oxidoreductase

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Location: 4,449 - 28,408 nt. (total: 23,960 nt) Show pHMM detection rules used

Molybdopterin_dependent_oxidoreductase: ((DmsC and Molybdopterin and minimum(2, [Fer4_11, Fer4_4, Molybdop_Fe4S4, Molydop_binding])) or (NrfD and Molybdopterin and minimum(2, [Fer4_11, Molybdop_Fe4S4, Molydop_binding]) and not (Nitr_red_bet_C or Nitrate_red_del)))

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c00002_NZ_PPTT.. - Region 2 - Flavoenzyme_lipids_catabolism

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Location: 59,605 - 94,884 nt. (total: 35,280 nt) Show pHMM detection rules used

Flavoenzyme_lipids_catabolism: ((cds(Pyr_redox_2 and Oxidored_FMN) or baiCD or baiH) and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis))

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c00003_NZ_PPTT.. - Region 1 - Molybdopterin_dependent_oxidoreductase

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Location: 98,668 - 117,704 nt. (total: 19,037 nt) Show pHMM detection rules used

Region on contig edge.

Molybdopterin_dependent_oxidoreductase: ((DmsC and Molybdopterin and minimum(2, [Fer4_11, Fer4_4, Molybdop_Fe4S4, Molydop_binding])) or (NrfD and Molybdopterin and minimum(2, [Fer4_11, Molybdop_Fe4S4, Molydop_binding]) and not (Nitr_red_bet_C or Nitrate_red_del)))

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c00004_NZ_PPTT.. - Region 1 - Ech_complex,Molybdopterin_dependent_oxidoreductase

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Location: 32,843 - 86,794 nt. (total: 53,952 nt) Show pHMM detection rules used

Molybdopterin_dependent_oxidoreductase: ((DmsC and Molybdopterin and minimum(2, [Fer4_11, Fer4_4, Molybdop_Fe4S4, Molydop_binding])) or (NrfD and Molybdopterin and minimum(2, [Fer4_11, Molybdop_Fe4S4, Molydop_binding]) and not (Nitr_red_bet_C or Nitrate_red_del)))
Ech_complex: (NADHdh and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and Proton_antipo_M and Proton_antipo_N and not (Oxidored_q4 or Oxidored_q3 or Molybdopterin or Molydop_binding))

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c00005_NZ_PPTT.. - Region 1 - Molybdopterin_dependent_oxidoreductase

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Location: 34,025 - 58,817 nt. (total: 24,793 nt) Show pHMM detection rules used

Molybdopterin_dependent_oxidoreductase: ((DmsC and Molybdopterin and minimum(2, [Fer4_11, Fer4_4, Molybdop_Fe4S4, Molydop_binding])) or (NrfD and Molybdopterin and minimum(2, [Fer4_11, Molybdop_Fe4S4, Molydop_binding]) and not (Nitr_red_bet_C or Nitrate_red_del)))

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c00006_NZ_PPTT.. - Region 1 - Others_HGD_unassigned

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Location: 1 - 17,725 nt. (total: 17,725 nt) Show pHMM detection rules used

Region on contig edge.

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

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c00006_NZ_PPTT.. - Region 2 - Flavoenzyme_lipids_catabolism,Molybdopterin_dependent_oxidoreductase

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Location: 57,606 - 97,071 nt. (total: 39,466 nt) Show pHMM detection rules used

Region on contig edge.

Flavoenzyme_lipids_catabolism: ((cds(Pyr_redox_2 and Oxidored_FMN) or baiCD or baiH) and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis))
Molybdopterin_dependent_oxidoreductase: ((DmsC and Molybdopterin and minimum(2, [Fer4_11, Fer4_4, Molybdop_Fe4S4, Molydop_binding])) or (NrfD and Molybdopterin and minimum(2, [Fer4_11, Molybdop_Fe4S4, Molydop_binding]) and not (Nitr_red_bet_C or Nitrate_red_del)))

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c00007_NZ_PPTT.. - Region 1 - p-cresol

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Location: 48,594 - 72,616 nt. (total: 24,023 nt) Show pHMM detection rules used

p-cresol: (PFL_6_pcresol and (Gly_430_pcre or Gly_radical) and hpdC and Radical_SAM and not NRDD)

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c00008_NZ_PPTT.. - Region 1 - Molybdopterin_dependent_oxidoreductase

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Location: 53,807 - 91,956 nt. (total: 38,150 nt) Show pHMM detection rules used

Region on contig edge.

Molybdopterin_dependent_oxidoreductase: ((DmsC and Molybdopterin and minimum(2, [Fer4_11, Fer4_4, Molybdop_Fe4S4, Molydop_binding])) or (NrfD and Molybdopterin and minimum(2, [Fer4_11, Molybdop_Fe4S4, Molydop_binding]) and not (Nitr_red_bet_C or Nitrate_red_del)))

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core biosynthetic genes

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c00010_NZ_PPTT.. - Region 1 - Others_HGD_unassigned

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Location: 56,291 - 82,098 nt. (total: 25,808 nt) Show pHMM detection rules used

Region on contig edge.

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

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c00012_NZ_PPTT.. - Region 1 - Others_HGD_unassigned

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Location: 126,633 - 151,366 nt. (total: 24,734 nt) Show pHMM detection rules used

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

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c00014_NZ_PPTT.. - Region 1 - Molybdopterin_dependent_oxidoreductase

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Location: 1 - 31,059 nt. (total: 31,059 nt) Show pHMM detection rules used

Region on contig edge.

Molybdopterin_dependent_oxidoreductase: ((DmsC and Molybdopterin and minimum(2, [Fer4_11, Fer4_4, Molybdop_Fe4S4, Molydop_binding])) or (NrfD and Molybdopterin and minimum(2, [Fer4_11, Molybdop_Fe4S4, Molydop_binding]) and not (Nitr_red_bet_C or Nitrate_red_del)))

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c00023_NZ_PPTT.. - Region 1 - Molybdopterin_dependent_oxidoreductase

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Location: 16,654 - 49,818 nt. (total: 33,165 nt) Show pHMM detection rules used

Molybdopterin_dependent_oxidoreductase: ((DmsC and Molybdopterin and minimum(2, [Fer4_11, Fer4_4, Molybdop_Fe4S4, Molydop_binding])) or (NrfD and Molybdopterin and minimum(2, [Fer4_11, Molybdop_Fe4S4, Molydop_binding]) and not (Nitr_red_bet_C or Nitrate_red_del)))

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c00025_NZ_PPTT.. - Region 1 - porA

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Location: 29,178 - 45,749 nt. (total: 16,572 nt) Show pHMM detection rules used

Region on contig edge.

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

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c00027_NZ_PPTT.. - Region 1 - Molybdopterin_dependent_oxidoreductase

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Location: 1 - 43,494 nt. (total: 43,494 nt) Show pHMM detection rules used

Region on contig edge.

Molybdopterin_dependent_oxidoreductase: ((DmsC and Molybdopterin and minimum(2, [Fer4_11, Fer4_4, Molybdop_Fe4S4, Molydop_binding])) or (NrfD and Molybdopterin and minimum(2, [Fer4_11, Molybdop_Fe4S4, Molydop_binding]) and not (Nitr_red_bet_C or Nitrate_red_del)))

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c00028_NZ_PPTT.. - Region 1 - Arginine2putrescine

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Location: 1 - 29,739 nt. (total: 29,739 nt) Show pHMM detection rules used

Region on contig edge.

Arginine2putrescine: (minimum(3, [AdoMet_dc, Amidinotransf, Arginase, OKR_DC_1, OKR_DC_1_7_arginine, OTCace]) or ((OKR_DC_1_5_ornithine or OKR_DC_1 or Orn_Arg_deC_N) and minimum(1, [Arginase, OTCace, OTCace_N, PAD_porph])))

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c00034_NZ_PPTT.. - Region 1 - Molybdopterin_dependent_oxidoreductase

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Location: 57,861 - 100,976 nt. (total: 43,116 nt) Show pHMM detection rules used

Molybdopterin_dependent_oxidoreductase: ((DmsC and Molybdopterin and minimum(2, [Fer4_11, Fer4_4, Molybdop_Fe4S4, Molydop_binding])) or (NrfD and Molybdopterin and minimum(2, [Fer4_11, Molybdop_Fe4S4, Molydop_binding]) and not (Nitr_red_bet_C or Nitrate_red_del)))

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c00034_NZ_PPTT.. - Region 2 - Molybdopterin_dependent_oxidoreductase

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Location: 185,462 - 204,908 nt. (total: 19,447 nt) Show pHMM detection rules used

Region on contig edge.

Molybdopterin_dependent_oxidoreductase: ((DmsC and Molybdopterin and minimum(2, [Fer4_11, Fer4_4, Molybdop_Fe4S4, Molydop_binding])) or (NrfD and Molybdopterin and minimum(2, [Fer4_11, Molybdop_Fe4S4, Molydop_binding]) and not (Nitr_red_bet_C or Nitrate_red_del)))

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c00035_NZ_PPTT.. - Region 1 - TPP_AA_metabolism

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Location: 15,192 - 30,484 nt. (total: 15,293 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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c00039_NZ_PPTT.. - Region 1 - Molybdopterin_dependent_oxidoreductase

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Location: 1 - 19,654 nt. (total: 19,654 nt) Show pHMM detection rules used

Region on contig edge.

Molybdopterin_dependent_oxidoreductase: ((DmsC and Molybdopterin and minimum(2, [Fer4_11, Fer4_4, Molybdop_Fe4S4, Molydop_binding])) or (NrfD and Molybdopterin and minimum(2, [Fer4_11, Molybdop_Fe4S4, Molydop_binding]) and not (Nitr_red_bet_C or Nitrate_red_del)))

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c00044_NZ_PPTT.. - Region 1 - Molybdopterin_dependent_oxidoreductase

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Location: 1 - 12,393 nt. (total: 12,393 nt) Show pHMM detection rules used

Region on contig edge.

Molybdopterin_dependent_oxidoreductase: ((DmsC and Molybdopterin and minimum(2, [Fer4_11, Fer4_4, Molybdop_Fe4S4, Molydop_binding])) or (NrfD and Molybdopterin and minimum(2, [Fer4_11, Molybdop_Fe4S4, Molydop_binding]) and not (Nitr_red_bet_C or Nitrate_red_del)))

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c00045_NZ_PPTT.. - Region 1 - Arginine2_Hcarbonate

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Location: 47,094 - 70,459 nt. (total: 23,366 nt) Show pHMM detection rules used

Arginine2_Hcarbonate: (Amidinotransf and OTCace and OTCace_N and AA_kinase)

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c00046_NZ_PPTT.. - Region 1 - Molybdopterin_dependent_oxidoreductase

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Location: 1 - 11,616 nt. (total: 11,616 nt) Show pHMM detection rules used

Region on contig edge.

Molybdopterin_dependent_oxidoreductase: ((DmsC and Molybdopterin and minimum(2, [Fer4_11, Fer4_4, Molybdop_Fe4S4, Molydop_binding])) or (NrfD and Molybdopterin and minimum(2, [Fer4_11, Molybdop_Fe4S4, Molydop_binding]) and not (Nitr_red_bet_C or Nitrate_red_del)))

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c00050_NZ_PPTT.. - Region 1 - Molybdopterin_dependent_oxidoreductase

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Location: 1 - 9,798 nt. (total: 9,798 nt) Show pHMM detection rules used

Region on contig edge.

Molybdopterin_dependent_oxidoreductase: ((DmsC and Molybdopterin and minimum(2, [Fer4_11, Fer4_4, Molybdop_Fe4S4, Molydop_binding])) or (NrfD and Molybdopterin and minimum(2, [Fer4_11, Molybdop_Fe4S4, Molydop_binding]) and not (Nitr_red_bet_C or Nitrate_red_del)))

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c00056_NZ_PPTT.. - Region 1 - Molybdopterin_dependent_oxidoreductase

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Location: 158,564 - 185,226 nt. (total: 26,663 nt) Show pHMM detection rules used

Region on contig edge.

Molybdopterin_dependent_oxidoreductase: ((DmsC and Molybdopterin and minimum(2, [Fer4_11, Fer4_4, Molybdop_Fe4S4, Molydop_binding])) or (NrfD and Molybdopterin and minimum(2, [Fer4_11, Molybdop_Fe4S4, Molydop_binding]) and not (Nitr_red_bet_C or Nitrate_red_del)))

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