GCF_000219125.1_ASM21912v1_genomic - 23 region(s)

Identified primary metabolite regions

NZ_AFGF01000294 (original name was: NZ_AFGF01000294.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 3.1	porA	SCFA	1	12,664	porA C. sporogenes	POR	60%

NZ_AFGF01000280 (original name was: NZ_AFGF01000280.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 11.1	acetate2butyrate	SCFA	28,478	55,112	Acetate to butyrate C. sporogenes	BUT	100%

NZ_AFGF01000243 (original name was: NZ_AFGF01000243.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 27.1	Glycine_cleavage	Other	1	12,982	Glycine cleavage C. sticklandii	GLY	80%

NZ_AFGF01000193 (original name was: NZ_AFGF01000193.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 61.1	OD_AA_metabolism,proline2aminovalerate	npAA	1	20,462	porA C. sporogenes	POR	40%

NZ_AFGF01000144 (original name was: NZ_AFGF01000144.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 92.1	succinate2propionate	SCFA	46,326	68,977	Succinate to propionate V. parvulla	PRO	100%

NZ_AFGF01000135 (original name was: NZ_AFGF01000135.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 97.1	TPP_AA_metabolism	Putative	1	16,632

NZ_AFGF01000119 (original name was: NZ_AFGF01000119.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 106.1	PFOR_II_pathway,Pyruvate2acetate-formate	SCFA	19,087	54,130	Pyruvate to acetate and formate C. acetobutylicum	PFL_acetate	100%

NZ_AFGF01000116 (original name was: NZ_AFGF01000116.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 108.1	porA,OD_unknown	Putative	1	14,620	porA C. sporogenes	POR	60%

NZ_AFGF01000115 (original name was: NZ_AFGF01000115.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 109.1	Fumarate2succinate	SCFA	1	14,385

NZ_AFGF01000098 (original name was: NZ_AFGF01000098.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 117.1	Molybdopterin_dependent_oxidoreductase	E-MGC	12,278	40,517	DMSO-TMAO reducatse E. coli	DMSAO-TMAO	75%

NZ_AFGF01000085 (original name was: NZ_AFGF01000085.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 130.1	PFOR_II_pathway	SCFA	1	18,852	PFOR II pathway B. thetaiotaomicron	PFORII	100%

NZ_AFGF01000066 (original name was: NZ_AFGF01000066.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 146.1	Ech_complex	E-MGC	1	18,180

NZ_AFGF01000056 (original name was: NZ_AFGF01000056.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 153.1	porA	SCFA	1,290	24,140

NZ_AFGF01000050 (original name was: NZ_AFGF01000050.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 159.1	Acetyl-CoA_pathway	SCFA	1,352	37,980	Acetyl-CoA pathway C. beijerinckii	Acetate	53%
Region 159.2	pdu	SCFA-other	98,338	128,928	Propanediol degradation S. enterica	PDU	66%

NZ_AFGF01000026 (original name was: NZ_AFGF01000026.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 179.1	aminobutyrate2Butyrate	SCFA	1	16,990	Aminobutyrate to butyrate C. pasteurianum	AMINOBUT	20%

NZ_AFGF01000019 (original name was: NZ_AFGF01000019.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 186.1	Fumarate2succinate	SCFA	1	17,261

NZ_AFGF01000017 (original name was: NZ_AFGF01000017.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 188.1	Putrescine2spermidine	Aliphatic_amine	18,635	39,474	Arginine degradation C. sticklandii	ARG	22%
Region 188.2	porA	SCFA	60,803	82,684
Region 188.3	Others_HGD_unassigned	Putative	155,436	185,180
Region 188.4	porA	SCFA	199,763	222,337	porA C. sporogenes	POR	60%

NZ_AFGF01000015 (original name was: NZ_AFGF01000015.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 190.1	Arginine2_Hcarbonate	Other	1	18,879	Arginine to hydrogen carbonate P. aeruginosa	ARG	66%

NZ_AFGF01000005 (original name was: NZ_AFGF01000005.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 198.1	NADH_dehydrogenase_I	E-MGC	34,832	54,626	NADH dehydrogenase I Bacteroides sp.	NADHD	42%

No primary metabolite regions were found in these records:: NZ_AFGF01000296 (original name was: NZ_AFGF01000296.1); NZ_AFGF01000295 (original name was: NZ_AFGF01000295.1); NZ_AFGF01000292 (original name was: NZ_AFGF01000292.1); NZ_AFGF01000290 (original name was: NZ_AFGF01000290.1); NZ_AFGF01000289 (original name was: NZ_AFGF01000289.1); NZ_AFGF01000288 (original name was: NZ_AFGF01000288.1); NZ_AFGF01000287 (original name was: NZ_AFGF01000287.1); NZ_AFGF01000283 (original name was: NZ_AFGF01000283.1); NZ_AFGF01000282 (original name was: NZ_AFGF01000282.1); NZ_AFGF01000279 (original name was: NZ_AFGF01000279.1); NZ_AFGF01000278 (original name was: NZ_AFGF01000278.1); NZ_AFGF01000276 (original name was: NZ_AFGF01000276.1); NZ_AFGF01000270 (original name was: NZ_AFGF01000270.1); NZ_AFGF01000269 (original name was: NZ_AFGF01000269.1); NZ_AFGF01000266 (original name was: NZ_AFGF01000266.1); NZ_AFGF01000263 (original name was: NZ_AFGF01000263.1); NZ_AFGF01000260 (original name was: NZ_AFGF01000260.1); NZ_AFGF01000259 (original name was: NZ_AFGF01000259.1); NZ_AFGF01000258 (original name was: NZ_AFGF01000258.1); NZ_AFGF01000257 (original name was: NZ_AFGF01000257.1); NZ_AFGF01000254 (original name was: NZ_AFGF01000254.1); NZ_AFGF01000251 (original name was: NZ_AFGF01000251.1); NZ_AFGF01000246 (original name was: NZ_AFGF01000246.1); NZ_AFGF01000244 (original name was: NZ_AFGF01000244.1); NZ_AFGF01000241 (original name was: NZ_AFGF01000241.1); NZ_AFGF01000240 (original name was: NZ_AFGF01000240.1); NZ_AFGF01000238 (original name was: NZ_AFGF01000238.1); NZ_AFGF01000237 (original name was: NZ_AFGF01000237.1); NZ_AFGF01000234 (original name was: NZ_AFGF01000234.1); NZ_AFGF01000232 (original name was: NZ_AFGF01000232.1); NZ_AFGF01000231 (original name was: NZ_AFGF01000231.1); NZ_AFGF01000230 (original name was: NZ_AFGF01000230.1); NZ_AFGF01000228 (original name was: NZ_AFGF01000228.1); NZ_AFGF01000226 (original name was: NZ_AFGF01000226.1); NZ_AFGF01000225 (original name was: NZ_AFGF01000225.1); NZ_AFGF01000224 (original name was: NZ_AFGF01000224.1); NZ_AFGF01000222 (original name was: NZ_AFGF01000222.1); NZ_AFGF01000221 (original name was: NZ_AFGF01000221.1); NZ_AFGF01000220 (original name was: NZ_AFGF01000220.1); NZ_AFGF01000219 (original name was: NZ_AFGF01000219.1); NZ_AFGF01000217 (original name was: NZ_AFGF01000217.1); NZ_AFGF01000215 (original name was: NZ_AFGF01000215.1); NZ_AFGF01000214 (original name was: NZ_AFGF01000214.1); NZ_AFGF01000212 (original name was: NZ_AFGF01000212.1); NZ_AFGF01000211 (original name was: NZ_AFGF01000211.1); NZ_AFGF01000209 (original name was: NZ_AFGF01000209.1); NZ_AFGF01000208 (original name was: NZ_AFGF01000208.1); NZ_AFGF01000206 (original name was: NZ_AFGF01000206.1); NZ_AFGF01000205 (original name was: NZ_AFGF01000205.1); NZ_AFGF01000204 (original name was: NZ_AFGF01000204.1); NZ_AFGF01000203 (original name was: NZ_AFGF01000203.1); NZ_AFGF01000202 (original name was: NZ_AFGF01000202.1); NZ_AFGF01000201 (original name was: NZ_AFGF01000201.1); NZ_AFGF01000198 (original name was: NZ_AFGF01000198.1); NZ_AFGF01000197 (original name was: NZ_AFGF01000197.1); NZ_AFGF01000196 (original name was: NZ_AFGF01000196.1); NZ_AFGF01000194 (original name was: NZ_AFGF01000194.1); NZ_AFGF01000192 (original name was: NZ_AFGF01000192.1); NZ_AFGF01000191 (original name was: NZ_AFGF01000191.1); NZ_AFGF01000190 (original name was: NZ_AFGF01000190.1); NZ_AFGF01000186 (original name was: NZ_AFGF01000186.1); NZ_AFGF01000185 (original name was: NZ_AFGF01000185.1); NZ_AFGF01000183 (original name was: NZ_AFGF01000183.1); NZ_AFGF01000182 (original name was: NZ_AFGF01000182.1); NZ_AFGF01000181 (original name was: NZ_AFGF01000181.1); NZ_AFGF01000178 (original name was: NZ_AFGF01000178.1); NZ_AFGF01000174 (original name was: NZ_AFGF01000174.1); NZ_AFGF01000173 (original name was: NZ_AFGF01000173.1); NZ_AFGF01000172 (original name was: NZ_AFGF01000172.1); NZ_AFGF01000171 (original name was: NZ_AFGF01000171.1); NZ_AFGF01000170 (original name was: NZ_AFGF01000170.1); NZ_AFGF01000169 (original name was: NZ_AFGF01000169.1); NZ_AFGF01000168 (original name was: NZ_AFGF01000168.1); NZ_AFGF01000166 (original name was: NZ_AFGF01000166.1); NZ_AFGF01000164 (original name was: NZ_AFGF01000164.1); NZ_AFGF01000163 (original name was: NZ_AFGF01000163.1); NZ_AFGF01000162 (original name was: NZ_AFGF01000162.1); NZ_AFGF01000160 (original name was: NZ_AFGF01000160.1); NZ_AFGF01000159 (original name was: NZ_AFGF01000159.1); NZ_AFGF01000158 (original name was: NZ_AFGF01000158.1); NZ_AFGF01000157 (original name was: NZ_AFGF01000157.1); NZ_AFGF01000156 (original name was: NZ_AFGF01000156.1); NZ_AFGF01000155 (original name was: NZ_AFGF01000155.1); NZ_AFGF01000152 (original name was: NZ_AFGF01000152.1); NZ_AFGF01000151 (original name was: NZ_AFGF01000151.1); NZ_AFGF01000150 (original name was: NZ_AFGF01000150.1); NZ_AFGF01000147 (original name was: NZ_AFGF01000147.1); NZ_AFGF01000143 (original name was: NZ_AFGF01000143.1); NZ_AFGF01000141 (original name was: NZ_AFGF01000141.1); NZ_AFGF01000139 (original name was: NZ_AFGF01000139.1); NZ_AFGF01000136 (original name was: NZ_AFGF01000136.1); NZ_AFGF01000133 (original name was: NZ_AFGF01000133.1); NZ_AFGF01000129 (original name was: NZ_AFGF01000129.1); NZ_AFGF01000128 (original name was: NZ_AFGF01000128.1); NZ_AFGF01000126 (original name was: NZ_AFGF01000126.1); NZ_AFGF01000125 (original name was: NZ_AFGF01000125.1); NZ_AFGF01000124 (original name was: NZ_AFGF01000124.1); NZ_AFGF01000122 (original name was: NZ_AFGF01000122.1); NZ_AFGF01000121 (original name was: NZ_AFGF01000121.1); NZ_AFGF01000118 (original name was: NZ_AFGF01000118.1); NZ_AFGF01000113 (original name was: NZ_AFGF01000113.1); NZ_AFGF01000110 (original name was: NZ_AFGF01000110.1); NZ_AFGF01000107 (original name was: NZ_AFGF01000107.1); NZ_AFGF01000106 (original name was: NZ_AFGF01000106.1); NZ_AFGF01000102 (original name was: NZ_AFGF01000102.1); NZ_AFGF01000101 (original name was: NZ_AFGF01000101.1); NZ_AFGF01000099 (original name was: NZ_AFGF01000099.1); NZ_AFGF01000097 (original name was: NZ_AFGF01000097.1); NZ_AFGF01000096 (original name was: NZ_AFGF01000096.1); NZ_AFGF01000095 (original name was: NZ_AFGF01000095.1); NZ_AFGF01000094 (original name was: NZ_AFGF01000094.1); NZ_AFGF01000093 (original name was: NZ_AFGF01000093.1); NZ_AFGF01000092 (original name was: NZ_AFGF01000092.1); NZ_AFGF01000091 (original name was: NZ_AFGF01000091.1); NZ_AFGF01000090 (original name was: NZ_AFGF01000090.1); NZ_AFGF01000089 (original name was: NZ_AFGF01000089.1); NZ_AFGF01000088 (original name was: NZ_AFGF01000088.1); NZ_AFGF01000087 (original name was: NZ_AFGF01000087.1); NZ_AFGF01000086 (original name was: NZ_AFGF01000086.1); NZ_AFGF01000084 (original name was: NZ_AFGF01000084.1); NZ_AFGF01000083 (original name was: NZ_AFGF01000083.1); NZ_AFGF01000082 (original name was: NZ_AFGF01000082.1); NZ_AFGF01000081 (original name was: NZ_AFGF01000081.1); NZ_AFGF01000079 (original name was: NZ_AFGF01000079.1); NZ_AFGF01000078 (original name was: NZ_AFGF01000078.1); NZ_AFGF01000077 (original name was: NZ_AFGF01000077.1); NZ_AFGF01000076 (original name was: NZ_AFGF01000076.1); NZ_AFGF01000074 (original name was: NZ_AFGF01000074.1); NZ_AFGF01000073 (original name was: NZ_AFGF01000073.1); NZ_AFGF01000072 (original name was: NZ_AFGF01000072.1); NZ_AFGF01000071 (original name was: NZ_AFGF01000071.1); NZ_AFGF01000070 (original name was: NZ_AFGF01000070.1); NZ_AFGF01000069 (original name was: NZ_AFGF01000069.1); NZ_AFGF01000068 (original name was: NZ_AFGF01000068.1); NZ_AFGF01000065 (original name was: NZ_AFGF01000065.1); NZ_AFGF01000063 (original name was: NZ_AFGF01000063.1); NZ_AFGF01000062 (original name was: NZ_AFGF01000062.1); NZ_AFGF01000061 (original name was: NZ_AFGF01000061.1); NZ_AFGF01000060 (original name was: NZ_AFGF01000060.1); NZ_AFGF01000057 (original name was: NZ_AFGF01000057.1); NZ_AFGF01000055 (original name was: NZ_AFGF01000055.1); NZ_AFGF01000054 (original name was: NZ_AFGF01000054.1); NZ_AFGF01000053 (original name was: NZ_AFGF01000053.1); NZ_AFGF01000052 (original name was: NZ_AFGF01000052.1); NZ_AFGF01000051 (original name was: NZ_AFGF01000051.1); NZ_AFGF01000049 (original name was: NZ_AFGF01000049.1); NZ_AFGF01000048 (original name was: NZ_AFGF01000048.1); NZ_AFGF01000047 (original name was: NZ_AFGF01000047.1); NZ_AFGF01000046 (original name was: NZ_AFGF01000046.1); NZ_AFGF01000043 (original name was: NZ_AFGF01000043.1); NZ_AFGF01000042 (original name was: NZ_AFGF01000042.1); NZ_AFGF01000041 (original name was: NZ_AFGF01000041.1); NZ_AFGF01000040 (original name was: NZ_AFGF01000040.1); NZ_AFGF01000039 (original name was: NZ_AFGF01000039.1); NZ_AFGF01000038 (original name was: NZ_AFGF01000038.1); NZ_AFGF01000037 (original name was: NZ_AFGF01000037.1); NZ_AFGF01000036 (original name was: NZ_AFGF01000036.1); NZ_AFGF01000035 (original name was: NZ_AFGF01000035.1); NZ_AFGF01000034 (original name was: NZ_AFGF01000034.1); NZ_AFGF01000033 (original name was: NZ_AFGF01000033.1); NZ_AFGF01000032 (original name was: NZ_AFGF01000032.1); NZ_AFGF01000030 (original name was: NZ_AFGF01000030.1); NZ_AFGF01000029 (original name was: NZ_AFGF01000029.1); NZ_AFGF01000028 (original name was: NZ_AFGF01000028.1); NZ_AFGF01000025 (original name was: NZ_AFGF01000025.1); NZ_AFGF01000024 (original name was: NZ_AFGF01000024.1); NZ_AFGF01000023 (original name was: NZ_AFGF01000023.1); NZ_AFGF01000022 (original name was: NZ_AFGF01000022.1); NZ_AFGF01000021 (original name was: NZ_AFGF01000021.1); NZ_AFGF01000020 (original name was: NZ_AFGF01000020.1); NZ_AFGF01000018 (original name was: NZ_AFGF01000018.1); NZ_AFGF01000016 (original name was: NZ_AFGF01000016.1); NZ_AFGF01000014 (original name was: NZ_AFGF01000014.1); NZ_AFGF01000013 (original name was: NZ_AFGF01000013.1); NZ_AFGF01000012 (original name was: NZ_AFGF01000012.1); NZ_AFGF01000010 (original name was: NZ_AFGF01000010.1); NZ_AFGF01000008 (original name was: NZ_AFGF01000008.1); NZ_AFGF01000007 (original name was: NZ_AFGF01000007.1); NZ_AFGF01000006 (original name was: NZ_AFGF01000006.1); NZ_AFGF01000004 (original name was: NZ_AFGF01000004.1); NZ_AFGF01000001 (original name was: NZ_AFGF01000001.1)

Compact view

c00003_NZ_AFGF.. - Region 1 - porA

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Location: 1 - 12,664 nt. (total: 12,664 nt) Show pHMM detection rules used

Region on contig edge.

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

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c00011_NZ_AFGF.. - Region 1 - acetate2butyrate

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Location: 28,478 - 55,112 nt. (total: 26,635 nt) Show pHMM detection rules used

acetate2butyrate: (not (POR or POR_N or PFOR_II) and minimum(4, [Acyl-CoA_dh_1, Acyl-CoA_dh_2, ECH_2, ETF, ETF_alpha, HCDH_N, Thiolase_N, ketoacyl-synt]) and HCDH and minimum(1, [EC1_2-faecali, ECH1_Enoyl_CoA_DH1, ECH1_Enoyl_CoA_DH2, ECH1_Enoyl_CoA_DH3, ECH1_Enoyl_CoA_DH4, Thiolase_C]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Similar known gene clusters

c00027_NZ_AFGF.. - Region 1 - Glycine_cleavage

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Location: 1 - 12,982 nt. (total: 12,982 nt) Show pHMM detection rules used

Region on contig edge.

Glycine_cleavage: (minimum(2, [Aminotran_5, GCV_H, GCV_T, GDC-P, SoxG]) and GCV_H and GCV_T_C)

Legend:

core biosynthetic genes

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transport-related genes

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resistance genes

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c00061_NZ_AFGF.. - Region 1 - OD_AA_metabolism,proline2aminovalerate

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Location: 1 - 20,462 nt. (total: 20,462 nt) Show pHMM detection rules used

Region on contig edge.

OD_AA_metabolism: (minimum(1, [PFOR_II, POR, POR_N]) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (Gly_radical_scatole or Gly_radical or Gly_430_pcre or Gly_8-9_TMA))
proline2aminovalerate: (Proline_reductase and (Pro_racemase or GRDB) and not ACP_syn_III_C)

Legend:

core biosynthetic genes

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transport-related genes

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KnownClusterBlast

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c00092_NZ_AFGF.. - Region 1 - succinate2propionate

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Location: 46,326 - 68,977 nt. (total: 22,652 nt) Show pHMM detection rules used

Region on contig edge.

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

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c00097_NZ_AFGF.. - Region 1 - TPP_AA_metabolism

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Location: 1 - 16,632 nt. (total: 16,632 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

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No matches found.

c00106_NZ_AFGF.. - Region 1 - PFOR_II_pathway,Pyruvate2acetate-formate

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Location: 19,087 - 54,130 nt. (total: 35,044 nt) Show pHMM detection rules used

PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)
Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

Legend:

core biosynthetic genes

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resistance genes

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electron transport genes

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c00108_NZ_AFGF.. - Region 1 - OD_unknown,porA

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Location: 1 - 14,620 nt. (total: 14,620 nt) Show pHMM detection rules used

Region on contig edge.

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))
OD_unknown: (minimum(1, [PFOR_II, POR, POR_N]) and minimum(2, [CoA_binding, CoA_binding_2, Ligase_CoA, PTAC, Succ_CoA_lig]) and not (Gly_radical_scatole or Gly_radical or Gly_430_pcre or Gly_8-9_TMA))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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c00109_NZ_AFGF.. - Region 1 - Fumarate2succinate

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Location: 1 - 14,385 nt. (total: 14,385 nt) Show pHMM detection rules used

Region on contig edge.

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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c00117_NZ_AFGF.. - Region 1 - Molybdopterin_dependent_oxidoreductase

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Location: 12,278 - 40,517 nt. (total: 28,240 nt) Show pHMM detection rules used

Molybdopterin_dependent_oxidoreductase: ((DmsC and Molybdopterin and minimum(2, [Fer4_11, Fer4_4, Molybdop_Fe4S4, Molydop_binding])) or (NrfD and Molybdopterin and minimum(2, [Fer4_11, Molybdop_Fe4S4, Molydop_binding]) and not (Nitr_red_bet_C or Nitrate_red_del)))

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c00130_NZ_AFGF.. - Region 1 - PFOR_II_pathway

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Location: 1 - 18,852 nt. (total: 18,852 nt) Show pHMM detection rules used

Region on contig edge.

PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

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c00146_NZ_AFGF.. - Region 1 - Ech_complex

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Location: 1 - 18,180 nt. (total: 18,180 nt) Show pHMM detection rules used

Region on contig edge.

Ech_complex: (NADHdh and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and Proton_antipo_M and Proton_antipo_N and not (Oxidored_q4 or Oxidored_q3 or Molybdopterin or Molydop_binding))

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c00153_NZ_AFGF.. - Region 1 - porA

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Location: 1,290 - 24,140 nt. (total: 22,851 nt) Show pHMM detection rules used

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

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c00159_NZ_AFGF.. - Region 1 - Acetyl-CoA_pathway

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Location: 1,352 - 37,980 nt. (total: 36,629 nt) Show pHMM detection rules used

Acetyl-CoA_pathway: (CdhC and CdhD and minimum(8, [CbiA, FTCD_C, FTHFS, FeS, Fer2, GCV_H, MTHFR, MTHFR_C, Prismane, Pterin_bind, Pyr_redox_2, Pyr_redox_dim, RACo_C_ter, THF_DHG_CYH, THF_DHG_CYH_C]))

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c00159_NZ_AFGF.. - Region 2 - pdu

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Location: 98,338 - 128,928 nt. (total: 30,591 nt) Show pHMM detection rules used

Region on contig edge.

pdu: (minimum(2, [Aldedh, BMC, Cob_adeno_trans, EutN_CcmL, Fe-ADH, Fe-ADH_2, PDU_like, PTAC, PduV-EutP]) and Dehydratase_MU and Dehydratase_SU and Dehydratase_LU)

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c00179_NZ_AFGF.. - Region 1 - aminobutyrate2Butyrate

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Location: 1 - 16,990 nt. (total: 16,990 nt) Show pHMM detection rules used

Region on contig edge.

aminobutyrate2Butyrate: (minimum(2, [AcetylCoA_hyd_C, AcetylCoA_hydro, Fe-ADH, Fe-ADH_2, HBT, Mal_decarbox_Al]) and cds(HpaB_N and HpaB) and not (LAM_C or BKACE))

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c00186_NZ_AFGF.. - Region 1 - Fumarate2succinate

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Location: 1 - 17,261 nt. (total: 17,261 nt) Show pHMM detection rules used

Region on contig edge.

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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c00188_NZ_AFGF.. - Region 1 - Putrescine2spermidine

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Location: 18,635 - 39,474 nt. (total: 20,840 nt) Show pHMM detection rules used

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

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c00188_NZ_AFGF.. - Region 2 - porA

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Location: 60,803 - 82,684 nt. (total: 21,882 nt) Show pHMM detection rules used

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

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c00188_NZ_AFGF.. - Region 3 - Others_HGD_unassigned

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Location: 155,436 - 185,180 nt. (total: 29,745 nt) Show pHMM detection rules used

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

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c00188_NZ_AFGF.. - Region 4 - porA

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Location: 199,763 - 222,337 nt. (total: 22,575 nt) Show pHMM detection rules used

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

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c00190_NZ_AFGF.. - Region 1 - Arginine2_Hcarbonate

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Location: 1 - 18,879 nt. (total: 18,879 nt) Show pHMM detection rules used

Region on contig edge.

Arginine2_Hcarbonate: (Amidinotransf and OTCace and OTCace_N and AA_kinase)

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c00198_NZ_AFGF.. - Region 1 - NADH_dehydrogenase_I

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Location: 34,832 - 54,626 nt. (total: 19,795 nt) Show pHMM detection rules used

Region on contig edge.

NADH_dehydrogenase_I: (Oxidored_q4 and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and NADHdh and Oxidored_q3 and Oxidored_q2 and minimum(4, [Fe-2S_thioredx, Fer2_4, Fer4_7, Molybdop_Fe4S4, Molydop_binding, NADH-G_4Fe-4S_3, NADH_4Fe-4S, Proton_antipo_M, Proton_antipo_N, SLBB]))

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