GCF_003726035.1_ASM372603v1_genomic - 10 region(s)

Identified primary metabolite regions

NZ_QICD01000001 (original name was: NZ_QICD01000001.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 1.1	porA,Molybdopterin_dependent_oxidoreductase	E-MGC	45,346	111,610	DMSO-TMAO reducatse E. coli	DMSAO-TMAO	75%

NZ_QICD01000002 (original name was: NZ_QICD01000002.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 2.1	Ech_complex,OD_fatty_acids	Putative	9,651	52,756	Ech complex C. sp. AF08-23	ECH	100%
Region 2.2	porA	SCFA	143,176	165,823	porA C. sporogenes	POR	60%

NZ_QICD01000003 (original name was: NZ_QICD01000003.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 3.1	Flavoenzyme_lipids_catabolism	Putative	25,881	53,588	Aromatic amino acid reductive branch C. sporogenes	AAA	25%

NZ_QICD01000004 (original name was: NZ_QICD01000004.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 4.1	Molybdopterin_dependent_oxidoreductase	E-MGC	91,128	117,118

NZ_QICD01000010 (original name was: NZ_QICD01000010.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 10.1	Molybdopterin_dependent_oxidoreductase	E-MGC	33,544	61,653	DMSO-TMAO reducatse E. coli	DMSAO-TMAO	75%

NZ_QICD01000012 (original name was: NZ_QICD01000012.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 12.1	TPP_AA_metabolism,Molybdopterin_dependent_oxidoreductase	E-MGC	16,105	61,785	Carnitine caiTABCDE E. coli	CAR	33%

NZ_QICD01000020 (original name was: NZ_QICD01000020.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 20.1	Others_HGD_unassigned	Putative	9,964	34,580

NZ_QICD01000026 (original name was: NZ_QICD01000026.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 26.1	Fumarate2succinate	SCFA	20,516	35,904

NZ_QICD01000035 (original name was: NZ_QICD01000035.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 35.1	Arginine2_Hcarbonate	Other	1	13,040	Arginine to hydrogen carbonate P. aeruginosa	ARG	66%

No primary metabolite regions were found in these records:: NZ_QICD01000005 (original name was: NZ_QICD01000005.1); NZ_QICD01000006 (original name was: NZ_QICD01000006.1); NZ_QICD01000007 (original name was: NZ_QICD01000007.1); NZ_QICD01000008 (original name was: NZ_QICD01000008.1); NZ_QICD01000009 (original name was: NZ_QICD01000009.1); NZ_QICD01000011 (original name was: NZ_QICD01000011.1); NZ_QICD01000013 (original name was: NZ_QICD01000013.1); NZ_QICD01000014 (original name was: NZ_QICD01000014.1); NZ_QICD01000015 (original name was: NZ_QICD01000015.1); NZ_QICD01000016 (original name was: NZ_QICD01000016.1); NZ_QICD01000017 (original name was: NZ_QICD01000017.1); NZ_QICD01000018 (original name was: NZ_QICD01000018.1); NZ_QICD01000019 (original name was: NZ_QICD01000019.1); NZ_QICD01000021 (original name was: NZ_QICD01000021.1); NZ_QICD01000022 (original name was: NZ_QICD01000022.1); NZ_QICD01000023 (original name was: NZ_QICD01000023.1); NZ_QICD01000024 (original name was: NZ_QICD01000024.1); NZ_QICD01000025 (original name was: NZ_QICD01000025.1); NZ_QICD01000027 (original name was: NZ_QICD01000027.1); NZ_QICD01000028 (original name was: NZ_QICD01000028.1); NZ_QICD01000029 (original name was: NZ_QICD01000029.1); NZ_QICD01000030 (original name was: NZ_QICD01000030.1); NZ_QICD01000031 (original name was: NZ_QICD01000031.1); NZ_QICD01000032 (original name was: NZ_QICD01000032.1); NZ_QICD01000033 (original name was: NZ_QICD01000033.1); NZ_QICD01000034 (original name was: NZ_QICD01000034.1); NZ_QICD01000036 (original name was: NZ_QICD01000036.1); NZ_QICD01000037 (original name was: NZ_QICD01000037.1); NZ_QICD01000038 (original name was: NZ_QICD01000038.1); NZ_QICD01000039 (original name was: NZ_QICD01000039.1); NZ_QICD01000040 (original name was: NZ_QICD01000040.1); NZ_QICD01000041 (original name was: NZ_QICD01000041.1); NZ_QICD01000042 (original name was: NZ_QICD01000042.1); NZ_QICD01000043 (original name was: NZ_QICD01000043.1); NZ_QICD01000044 (original name was: NZ_QICD01000044.1); NZ_QICD01000045 (original name was: NZ_QICD01000045.1); NZ_QICD01000046 (original name was: NZ_QICD01000046.1); NZ_QICD01000047 (original name was: NZ_QICD01000047.1); NZ_QICD01000048 (original name was: NZ_QICD01000048.1); NZ_QICD01000049 (original name was: NZ_QICD01000049.1); NZ_QICD01000050 (original name was: NZ_QICD01000050.1); NZ_QICD01000051 (original name was: NZ_QICD01000051.1); NZ_QICD01000052 (original name was: NZ_QICD01000052.1); NZ_QICD01000053 (original name was: NZ_QICD01000053.1); NZ_QICD01000054 (original name was: NZ_QICD01000054.1); NZ_QICD01000055 (original name was: NZ_QICD01000055.1)

Compact view

c00001_NZ_QICD.. - Region 1 - Molybdopterin_dependent_oxidoreductase,porA

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Location: 45,346 - 111,610 nt. (total: 66,265 nt) Show pHMM detection rules used

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))
Molybdopterin_dependent_oxidoreductase: ((DmsC and Molybdopterin and minimum(2, [Fer4_11, Fer4_4, Molybdop_Fe4S4, Molydop_binding])) or (NrfD and Molybdopterin and minimum(2, [Fer4_11, Molybdop_Fe4S4, Molydop_binding]) and not (Nitr_red_bet_C or Nitrate_red_del)))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

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c00002_NZ_QICD.. - Region 1 - Ech_complex,OD_fatty_acids

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Location: 9,651 - 52,756 nt. (total: 43,106 nt) Show pHMM detection rules used

Ech_complex: (NADHdh and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and Proton_antipo_M and Proton_antipo_N and not (Oxidored_q4 or Oxidored_q3 or Molybdopterin or Molydop_binding))
OD_fatty_acids: (minimum(1, [PFOR_II, POR, POR_N]) and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (Gly_radical_scatole or Gly_radical or Gly_430_pcre or Gly_8-9_TMA))

Legend:

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transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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c00002_NZ_QICD.. - Region 2 - porA

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Location: 143,176 - 165,823 nt. (total: 22,648 nt) Show pHMM detection rules used

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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c00003_NZ_QICD.. - Region 1 - Flavoenzyme_lipids_catabolism

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Location: 25,881 - 53,588 nt. (total: 27,708 nt) Show pHMM detection rules used

Flavoenzyme_lipids_catabolism: ((cds(Pyr_redox_2 and Oxidored_FMN) or baiCD or baiH) and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis))

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core biosynthetic genes

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transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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c00004_NZ_QICD.. - Region 1 - Molybdopterin_dependent_oxidoreductase

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Location: 91,128 - 117,118 nt. (total: 25,991 nt) Show pHMM detection rules used

Molybdopterin_dependent_oxidoreductase: ((DmsC and Molybdopterin and minimum(2, [Fer4_11, Fer4_4, Molybdop_Fe4S4, Molydop_binding])) or (NrfD and Molybdopterin and minimum(2, [Fer4_11, Molybdop_Fe4S4, Molydop_binding]) and not (Nitr_red_bet_C or Nitrate_red_del)))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

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c00010_NZ_QICD.. - Region 1 - Molybdopterin_dependent_oxidoreductase

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Location: 33,544 - 61,653 nt. (total: 28,110 nt) Show pHMM detection rules used

Molybdopterin_dependent_oxidoreductase: ((DmsC and Molybdopterin and minimum(2, [Fer4_11, Fer4_4, Molybdop_Fe4S4, Molydop_binding])) or (NrfD and Molybdopterin and minimum(2, [Fer4_11, Molybdop_Fe4S4, Molydop_binding]) and not (Nitr_red_bet_C or Nitrate_red_del)))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

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c00012_NZ_QICD.. - Region 1 - Molybdopterin_dependent_oxidoreductase,TPP_AA_metabolism

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Location: 16,105 - 61,785 nt. (total: 45,681 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))
Molybdopterin_dependent_oxidoreductase: ((DmsC and Molybdopterin and minimum(2, [Fer4_11, Fer4_4, Molybdop_Fe4S4, Molydop_binding])) or (NrfD and Molybdopterin and minimum(2, [Fer4_11, Molybdop_Fe4S4, Molydop_binding]) and not (Nitr_red_bet_C or Nitrate_red_del)))

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resistance genes

encapsulation genes

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c00020_NZ_QICD.. - Region 1 - Others_HGD_unassigned

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Location: 9,964 - 34,580 nt. (total: 24,617 nt) Show pHMM detection rules used

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

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c00026_NZ_QICD.. - Region 1 - Fumarate2succinate

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Location: 20,516 - 35,904 nt. (total: 15,389 nt) Show pHMM detection rules used

Region on contig edge.

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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c00035_NZ_QICD.. - Region 1 - Arginine2_Hcarbonate

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Location: 1 - 13,040 nt. (total: 13,040 nt) Show pHMM detection rules used

Region on contig edge.

Arginine2_Hcarbonate: (Amidinotransf and OTCace and OTCace_N and AA_kinase)

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