GCF_014193375.1_ASM1419337v1_genomic - 11 region(s)

Identified primary metabolite regions

c00003_NZ_JACH.. (original name was: NZ_JACHZF010000003.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 3.1	Nitrate_reductase	E-MGC	82,273	109,092	Nitrate reductase E. coli	NIR	80%

c00007_NZ_JACH.. (original name was: NZ_JACHZF010000007.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 7.1	Fumarate2succinate	SCFA	62,535	85,038	Fumarate2succinate suc dh E. coli	SUC	100%

c00008_NZ_JACH.. (original name was: NZ_JACHZF010000008.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 8.1	Glycine_cleavage	Other	121,094	147,608	Glycine cleavage C. sticklandii	GLY	80%

c00010_NZ_JACH.. (original name was: NZ_JACHZF010000010.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 10.1	TPP_fatty_acids	Putative	1	34,435	Acetate to butyrate C. sporogenes	BUT	50%
Region 10.2	Putrescine2spermidine	Aliphatic_amine	88,399	110,768	Arginine2putrescine R. gnavus	PUTR	40%

c00011_NZ_JACH.. (original name was: NZ_JACHZF010000011.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 11.1	acetate2butyrate	SCFA	1	19,474	Acetate to butyrate C. sporogenes	BUT	50%

c00015_NZ_JACH.. (original name was: NZ_JACHZF010000015.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 15.1	acetate2butyrate	SCFA	1	17,092	Acetate to butyrate C. sporogenes	BUT	50%

c00016_NZ_JACH.. (original name was: NZ_JACHZF010000016.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 16.1	Molybdopterin_dependent_oxidoreductase	E-MGC	42,586	67,645	Tetrathionate to thiosulfate S. enterica	THIOS	15%

c00017_NZ_JACH.. (original name was: NZ_JACHZF010000017.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 17.1	fatty_acids-unassigned	Putative	70,625	104,434

c00019_NZ_JACH.. (original name was: NZ_JACHZF010000019.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 19.1	fatty_acids-unassigned	Putative	7,536	30,923

c00043_NZ_JACH.. (original name was: NZ_JACHZF010000043.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 43.1	TPP_AA_metabolism	Putative	1	12,207

No primary metabolite regions were found in these records:: c00001_NZ_JACH.. (original name was: NZ_JACHZF010000001.1); c00002_NZ_JACH.. (original name was: NZ_JACHZF010000002.1); c00004_NZ_JACH.. (original name was: NZ_JACHZF010000004.1); c00005_NZ_JACH.. (original name was: NZ_JACHZF010000005.1); c00006_NZ_JACH.. (original name was: NZ_JACHZF010000006.1); c00009_NZ_JACH.. (original name was: NZ_JACHZF010000009.1); c00012_NZ_JACH.. (original name was: NZ_JACHZF010000012.1); c00013_NZ_JACH.. (original name was: NZ_JACHZF010000013.1); c00014_NZ_JACH.. (original name was: NZ_JACHZF010000014.1); c00018_NZ_JACH.. (original name was: NZ_JACHZF010000018.1); c00020_NZ_JACH.. (original name was: NZ_JACHZF010000020.1); c00021_NZ_JACH.. (original name was: NZ_JACHZF010000021.1); c00022_NZ_JACH.. (original name was: NZ_JACHZF010000022.1); c00023_NZ_JACH.. (original name was: NZ_JACHZF010000023.1); c00024_NZ_JACH.. (original name was: NZ_JACHZF010000024.1); c00025_NZ_JACH.. (original name was: NZ_JACHZF010000025.1); c00026_NZ_JACH.. (original name was: NZ_JACHZF010000026.1); c00027_NZ_JACH.. (original name was: NZ_JACHZF010000027.1); c00028_NZ_JACH.. (original name was: NZ_JACHZF010000028.1); c00029_NZ_JACH.. (original name was: NZ_JACHZF010000029.1); c00030_NZ_JACH.. (original name was: NZ_JACHZF010000030.1); c00031_NZ_JACH.. (original name was: NZ_JACHZF010000031.1); c00032_NZ_JACH.. (original name was: NZ_JACHZF010000032.1); c00033_NZ_JACH.. (original name was: NZ_JACHZF010000033.1); c00034_NZ_JACH.. (original name was: NZ_JACHZF010000034.1); c00035_NZ_JACH.. (original name was: NZ_JACHZF010000035.1); c00036_NZ_JACH.. (original name was: NZ_JACHZF010000036.1); c00037_NZ_JACH.. (original name was: NZ_JACHZF010000037.1); c00038_NZ_JACH.. (original name was: NZ_JACHZF010000038.1); c00039_NZ_JACH.. (original name was: NZ_JACHZF010000039.1); c00040_NZ_JACH.. (original name was: NZ_JACHZF010000040.1); c00041_NZ_JACH.. (original name was: NZ_JACHZF010000041.1); c00042_NZ_JACH.. (original name was: NZ_JACHZF010000042.1); c00044_NZ_JACH.. (original name was: NZ_JACHZF010000044.1); c00045_NZ_JACH.. (original name was: NZ_JACHZF010000045.1); c00046_NZ_JACH.. (original name was: NZ_JACHZF010000046.1); c00047_NZ_JACH.. (original name was: NZ_JACHZF010000047.1); c00048_NZ_JACH.. (original name was: NZ_JACHZF010000048.1); c00049_NZ_JACH.. (original name was: NZ_JACHZF010000049.1); c00050_NZ_JACH.. (original name was: NZ_JACHZF010000050.1); c00051_NZ_JACH.. (original name was: NZ_JACHZF010000051.1); c00052_NZ_JACH.. (original name was: NZ_JACHZF010000052.1); c00053_NZ_JACH.. (original name was: NZ_JACHZF010000053.1); c00054_NZ_JACH.. (original name was: NZ_JACHZF010000054.1); c00055_NZ_JACH.. (original name was: NZ_JACHZF010000055.1); c00056_NZ_JACH.. (original name was: NZ_JACHZF010000056.1); c00057_NZ_JACH.. (original name was: NZ_JACHZF010000057.1); c00058_NZ_JACH.. (original name was: NZ_JACHZF010000058.1); c00059_NZ_JACH.. (original name was: NZ_JACHZF010000059.1); c00060_NZ_JACH.. (original name was: NZ_JACHZF010000060.1); c00061_NZ_JACH.. (original name was: NZ_JACHZF010000061.1); c00062_NZ_JACH.. (original name was: NZ_JACHZF010000062.1); c00063_NZ_JACH.. (original name was: NZ_JACHZF010000063.1); c00064_NZ_JACH.. (original name was: NZ_JACHZF010000064.1); c00065_NZ_JACH.. (original name was: NZ_JACHZF010000065.1); c00066_NZ_JACH.. (original name was: NZ_JACHZF010000066.1); c00067_NZ_JACH.. (original name was: NZ_JACHZF010000067.1); c00068_NZ_JACH.. (original name was: NZ_JACHZF010000068.1); c00069_NZ_JACH.. (original name was: NZ_JACHZF010000069.1); c00070_NZ_JACH.. (original name was: NZ_JACHZF010000070.1); c00071_NZ_JACH.. (original name was: NZ_JACHZF010000071.1); c00072_NZ_JACH.. (original name was: NZ_JACHZF010000072.1); c00073_NZ_JACH.. (original name was: NZ_JACHZF010000073.1); c00074_NZ_JACH.. (original name was: NZ_JACHZF010000074.1); c00075_NZ_JACH.. (original name was: NZ_JACHZF010000075.1); c00076_NZ_JACH.. (original name was: NZ_JACHZF010000076.1); c00077_NZ_JACH.. (original name was: NZ_JACHZF010000077.1)

Compact view

c00003_NZ_JACH.. - Region 1 - Nitrate_reductase

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Location: 82,273 - 109,092 nt. (total: 26,820 nt) Show pHMM detection rules used

Nitrate_reductase: (Nitr_red_bet_C and Nitrate_red_del and Nitrate_red_gam and Molybdopterin and minimum(2, [Fer4_11, Molybdopterin, Molydop_binding, Nitr_red_alph_N]))

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core biosynthetic genes

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c00007_NZ_JACH.. - Region 1 - Fumarate2succinate

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Location: 62,535 - 85,038 nt. (total: 22,504 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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c00008_NZ_JACH.. - Region 1 - Glycine_cleavage

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Location: 121,094 - 147,608 nt. (total: 26,515 nt) Show pHMM detection rules used

Glycine_cleavage: (minimum(2, [Aminotran_5, GCV_H, GCV_T, GDC-P, SoxG]) and GCV_H and GCV_T_C)

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c00010_NZ_JACH.. - Region 1 - TPP_fatty_acids

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Location: 1 - 34,435 nt. (total: 34,435 nt) Show pHMM detection rules used

Region on contig edge.

TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))

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core biosynthetic genes

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c00010_NZ_JACH.. - Region 2 - Putrescine2spermidine

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Location: 88,399 - 110,768 nt. (total: 22,370 nt) Show pHMM detection rules used

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

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core biosynthetic genes

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c00011_NZ_JACH.. - Region 1 - acetate2butyrate

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Location: 1 - 19,474 nt. (total: 19,474 nt) Show pHMM detection rules used

Region on contig edge.

acetate2butyrate: (not (POR or POR_N or PFOR_II) and minimum(4, [Acyl-CoA_dh_1, Acyl-CoA_dh_2, ECH_2, ETF, ETF_alpha, HCDH_N, Thiolase_N, ketoacyl-synt]) and HCDH and minimum(1, [EC1_2-faecali, ECH1_Enoyl_CoA_DH1, ECH1_Enoyl_CoA_DH2, ECH1_Enoyl_CoA_DH3, ECH1_Enoyl_CoA_DH4, Thiolase_C]))

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core biosynthetic genes

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c00015_NZ_JACH.. - Region 1 - acetate2butyrate

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Location: 1 - 17,092 nt. (total: 17,092 nt) Show pHMM detection rules used

Region on contig edge.

acetate2butyrate: (not (POR or POR_N or PFOR_II) and minimum(4, [Acyl-CoA_dh_1, Acyl-CoA_dh_2, ECH_2, ETF, ETF_alpha, HCDH_N, Thiolase_N, ketoacyl-synt]) and HCDH and minimum(1, [EC1_2-faecali, ECH1_Enoyl_CoA_DH1, ECH1_Enoyl_CoA_DH2, ECH1_Enoyl_CoA_DH3, ECH1_Enoyl_CoA_DH4, Thiolase_C]))

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c00016_NZ_JACH.. - Region 1 - Molybdopterin_dependent_oxidoreductase

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Location: 42,586 - 67,645 nt. (total: 25,060 nt) Show pHMM detection rules used

Molybdopterin_dependent_oxidoreductase: ((DmsC and Molybdopterin and minimum(2, [Fer4_11, Fer4_4, Molybdop_Fe4S4, Molydop_binding])) or (NrfD and Molybdopterin and minimum(2, [Fer4_11, Molybdop_Fe4S4, Molydop_binding]) and not (Nitr_red_bet_C or Nitrate_red_del)))

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c00017_NZ_JACH.. - Region 1 - fatty_acids-unassigned

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Location: 70,625 - 104,434 nt. (total: 33,810 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

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core biosynthetic genes

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c00019_NZ_JACH.. - Region 1 - fatty_acids-unassigned

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Location: 7,536 - 30,923 nt. (total: 23,388 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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c00043_NZ_JACH.. - Region 1 - TPP_AA_metabolism

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Location: 1 - 12,207 nt. (total: 12,207 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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core biosynthetic genes

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regulatory genes

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