GCF_003550015.1_ASM355001v1_genomic - 5 region(s)

Identified primary metabolite regions

NZ_QXEV01000001 (original name was: NZ_QXEV01000001.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 1.1	Others_HGD_unassigned	Putative	189,473	213,677

NZ_QXEV01000002 (original name was: NZ_QXEV01000002.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 2.1	PFOR_II_pathway	SCFA	151,035	174,625	PFOR II pathway B. thetaiotaomicron	PFORII	100%

NZ_QXEV01000003 (original name was: NZ_QXEV01000003.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 3.1	Pyruvate2acetate-formate	SCFA	1,167	24,154	Pyruvate to acetate-formate E. coli	PFL_acetate	100%
Region 3.2	Rnf_complex	E-MGC	77,589	102,420	Rnf complex C. sporogenes	RNF	83%

NZ_QXEV01000010 (original name was: NZ_QXEV01000010.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 10.1	OD_AA_metabolism	Putative	1	23,047

Region	Type	Class	From	To	Most similar known cluster	Similarity
Region 1.1	Others_HGD_unassigned	Putative	189,473	213,677
Region 2.1	PFOR_II_pathway	SCFA	151,035	174,625	PFOR II pathway B. thetaiotaomicron	PFORII	100%
Region 3.1	Pyruvate2acetate-formate	SCFA	1,167	24,154	Pyruvate to acetate-formate E. coli	PFL_acetate	100%
Region 3.2	Rnf_complex	E-MGC	77,589	102,420	Rnf complex C. sporogenes	RNF	83%
Region 10.1	OD_AA_metabolism	Putative	1	23,047

No primary metabolite regions were found in these records:: NZ_QXEV01000004 (original name was: NZ_QXEV01000004.1); NZ_QXEV01000005 (original name was: NZ_QXEV01000005.1); NZ_QXEV01000006 (original name was: NZ_QXEV01000006.1); NZ_QXEV01000007 (original name was: NZ_QXEV01000007.1); NZ_QXEV01000008 (original name was: NZ_QXEV01000008.1); NZ_QXEV01000009 (original name was: NZ_QXEV01000009.1); NZ_QXEV01000011 (original name was: NZ_QXEV01000011.1); NZ_QXEV01000012 (original name was: NZ_QXEV01000012.1); NZ_QXEV01000013 (original name was: NZ_QXEV01000013.1); NZ_QXEV01000014 (original name was: NZ_QXEV01000014.1); NZ_QXEV01000015 (original name was: NZ_QXEV01000015.1); NZ_QXEV01000016 (original name was: NZ_QXEV01000016.1); NZ_QXEV01000017 (original name was: NZ_QXEV01000017.1); NZ_QXEV01000018 (original name was: NZ_QXEV01000018.1); NZ_QXEV01000019 (original name was: NZ_QXEV01000019.1); NZ_QXEV01000020 (original name was: NZ_QXEV01000020.1); NZ_QXEV01000021 (original name was: NZ_QXEV01000021.1); NZ_QXEV01000022 (original name was: NZ_QXEV01000022.1); NZ_QXEV01000023 (original name was: NZ_QXEV01000023.1); NZ_QXEV01000024 (original name was: NZ_QXEV01000024.1); NZ_QXEV01000025 (original name was: NZ_QXEV01000025.1); NZ_QXEV01000026 (original name was: NZ_QXEV01000026.1); NZ_QXEV01000027 (original name was: NZ_QXEV01000027.1); NZ_QXEV01000028 (original name was: NZ_QXEV01000028.1); NZ_QXEV01000029 (original name was: NZ_QXEV01000029.1); NZ_QXEV01000030 (original name was: NZ_QXEV01000030.1); NZ_QXEV01000031 (original name was: NZ_QXEV01000031.1); NZ_QXEV01000032 (original name was: NZ_QXEV01000032.1); NZ_QXEV01000033 (original name was: NZ_QXEV01000033.1); NZ_QXEV01000034 (original name was: NZ_QXEV01000034.1); NZ_QXEV01000035 (original name was: NZ_QXEV01000035.1); NZ_QXEV01000036 (original name was: NZ_QXEV01000036.1); NZ_QXEV01000037 (original name was: NZ_QXEV01000037.1); NZ_QXEV01000038 (original name was: NZ_QXEV01000038.1); NZ_QXEV01000039 (original name was: NZ_QXEV01000039.1); NZ_QXEV01000040 (original name was: NZ_QXEV01000040.1); NZ_QXEV01000041 (original name was: NZ_QXEV01000041.1); NZ_QXEV01000042 (original name was: NZ_QXEV01000042.1); NZ_QXEV01000043 (original name was: NZ_QXEV01000043.1); NZ_QXEV01000044 (original name was: NZ_QXEV01000044.1); NZ_QXEV01000045 (original name was: NZ_QXEV01000045.1); NZ_QXEV01000046 (original name was: NZ_QXEV01000046.1); NZ_QXEV01000047 (original name was: NZ_QXEV01000047.1); NZ_QXEV01000048 (original name was: NZ_QXEV01000048.1); NZ_QXEV01000049 (original name was: NZ_QXEV01000049.1); NZ_QXEV01000050 (original name was: NZ_QXEV01000050.1); NZ_QXEV01000051 (original name was: NZ_QXEV01000051.1); NZ_QXEV01000052 (original name was: NZ_QXEV01000052.1); NZ_QXEV01000053 (original name was: NZ_QXEV01000053.1); NZ_QXEV01000054 (original name was: NZ_QXEV01000054.1); NZ_QXEV01000055 (original name was: NZ_QXEV01000055.1); NZ_QXEV01000056 (original name was: NZ_QXEV01000056.1); NZ_QXEV01000057 (original name was: NZ_QXEV01000057.1); NZ_QXEV01000058 (original name was: NZ_QXEV01000058.1)

Compact view

c00001_NZ_QXEV.. - Region 1 - Others_HGD_unassigned

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Location: 189,473 - 213,677 nt. (total: 24,205 nt) Show pHMM detection rules used

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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c00002_NZ_QXEV.. - Region 1 - PFOR_II_pathway

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Location: 151,035 - 174,625 nt. (total: 23,591 nt) Show pHMM detection rules used

PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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Similar known gene clusters

c00003_NZ_QXEV.. - Region 1 - Pyruvate2acetate-formate

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Location: 1,167 - 24,154 nt. (total: 22,988 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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c00003_NZ_QXEV.. - Region 2 - Rnf_complex

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Location: 77,589 - 102,420 nt. (total: 24,832 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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c00010_NZ_QXEV.. - Region 1 - OD_AA_metabolism

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Location: 1 - 23,047 nt. (total: 23,047 nt) Show pHMM detection rules used

Region on contig edge.

OD_AA_metabolism: (minimum(1, [PFOR_II, POR, POR_N]) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (Gly_radical_scatole or Gly_radical or Gly_430_pcre or Gly_8-9_TMA))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.