GCF_004346165.1_ASM434616v1_genomic - 14 region(s)

Identified primary metabolite regions

NZ_SLZZ01000002 (original name was: NZ_SLZZ01000002.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 2.1	Hydroxy-L-proline2proline	Other	22,881	47,316	Hydroxy-L-proline2proline C. difficile	PRO	100%

NZ_SLZZ01000003 (original name was: NZ_SLZZ01000003.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 3.1	fatty_acids-unassigned	Putative	1	13,197	Acetate to butyrate C. sporogenes	BUT	33%
Region 3.2	GR_eut-pdu-related	Putative	78,596	109,403	Propanediol degradation S. enterica	PDU	41%

NZ_SLZZ01000004 (original name was: NZ_SLZZ01000004.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 4.1	Oxidative_glycerol	Other	1	23,037

NZ_SLZZ01000005 (original name was: NZ_SLZZ01000005.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 5.1	Ech_complex	E-MGC	132,067	156,726	Ech complex T. phaeum	ECH	71%

NZ_SLZZ01000007 (original name was: NZ_SLZZ01000007.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 7.1	Others_HGD_unassigned	Putative	103,104	127,423

NZ_SLZZ01000009 (original name was: NZ_SLZZ01000009.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 9.1	Rnf_complex	E-MGC	22,027	45,543	Rnf complex C. sporogenes	RNF	100%
Region 9.2	Rnf_complex	E-MGC	98,038	128,687	Acetyl-CoA pathway B. hydrogenotrophica	Acetate	19%

NZ_SLZZ01000011 (original name was: NZ_SLZZ01000011.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 11.1	proline2aminovalerate	npAA	67,971	100,855	Proline to aminovalerate C. sticklandii	AMI	50%

NZ_SLZZ01000015 (original name was: NZ_SLZZ01000015.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 15.1	Oxidative_glycerol	Other	30,954	53,853

NZ_SLZZ01000019 (original name was: NZ_SLZZ01000019.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 19.1	Others_HGD_unassigned	Putative	19,600	49,468

NZ_SLZZ01000021 (original name was: NZ_SLZZ01000021.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 21.1	PFOR_II_pathway	SCFA	25,757	49,299	PFOR II pathway B. thetaiotaomicron	PFORII	100%

NZ_SLZZ01000038 (original name was: NZ_SLZZ01000038.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 38.1	TPP_AA_metabolism	Putative	7,049	25,827

NZ_SLZZ01000040 (original name was: NZ_SLZZ01000040.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 40.1	Pyruvate2acetate-formate	SCFA	1	21,207	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

No primary metabolite regions were found in these records:: NZ_SLZZ01000001 (original name was: NZ_SLZZ01000001.1); NZ_SLZZ01000006 (original name was: NZ_SLZZ01000006.1); NZ_SLZZ01000008 (original name was: NZ_SLZZ01000008.1); NZ_SLZZ01000010 (original name was: NZ_SLZZ01000010.1); NZ_SLZZ01000012 (original name was: NZ_SLZZ01000012.1); NZ_SLZZ01000013 (original name was: NZ_SLZZ01000013.1); NZ_SLZZ01000014 (original name was: NZ_SLZZ01000014.1); NZ_SLZZ01000016 (original name was: NZ_SLZZ01000016.1); NZ_SLZZ01000017 (original name was: NZ_SLZZ01000017.1); NZ_SLZZ01000018 (original name was: NZ_SLZZ01000018.1); NZ_SLZZ01000020 (original name was: NZ_SLZZ01000020.1); NZ_SLZZ01000022 (original name was: NZ_SLZZ01000022.1); NZ_SLZZ01000023 (original name was: NZ_SLZZ01000023.1); NZ_SLZZ01000024 (original name was: NZ_SLZZ01000024.1); NZ_SLZZ01000025 (original name was: NZ_SLZZ01000025.1); NZ_SLZZ01000026 (original name was: NZ_SLZZ01000026.1); NZ_SLZZ01000027 (original name was: NZ_SLZZ01000027.1); NZ_SLZZ01000028 (original name was: NZ_SLZZ01000028.1); NZ_SLZZ01000029 (original name was: NZ_SLZZ01000029.1); NZ_SLZZ01000030 (original name was: NZ_SLZZ01000030.1); NZ_SLZZ01000031 (original name was: NZ_SLZZ01000031.1); NZ_SLZZ01000032 (original name was: NZ_SLZZ01000032.1); NZ_SLZZ01000033 (original name was: NZ_SLZZ01000033.1); NZ_SLZZ01000034 (original name was: NZ_SLZZ01000034.1); NZ_SLZZ01000035 (original name was: NZ_SLZZ01000035.1); NZ_SLZZ01000036 (original name was: NZ_SLZZ01000036.1); NZ_SLZZ01000037 (original name was: NZ_SLZZ01000037.1); NZ_SLZZ01000039 (original name was: NZ_SLZZ01000039.1); NZ_SLZZ01000041 (original name was: NZ_SLZZ01000041.1); NZ_SLZZ01000042 (original name was: NZ_SLZZ01000042.1); NZ_SLZZ01000043 (original name was: NZ_SLZZ01000043.1); NZ_SLZZ01000044 (original name was: NZ_SLZZ01000044.1); NZ_SLZZ01000045 (original name was: NZ_SLZZ01000045.1); NZ_SLZZ01000046 (original name was: NZ_SLZZ01000046.1); NZ_SLZZ01000047 (original name was: NZ_SLZZ01000047.1); NZ_SLZZ01000048 (original name was: NZ_SLZZ01000048.1); NZ_SLZZ01000049 (original name was: NZ_SLZZ01000049.1); NZ_SLZZ01000050 (original name was: NZ_SLZZ01000050.1); NZ_SLZZ01000051 (original name was: NZ_SLZZ01000051.1); NZ_SLZZ01000052 (original name was: NZ_SLZZ01000052.1); NZ_SLZZ01000053 (original name was: NZ_SLZZ01000053.1); NZ_SLZZ01000054 (original name was: NZ_SLZZ01000054.1); NZ_SLZZ01000055 (original name was: NZ_SLZZ01000055.1); NZ_SLZZ01000056 (original name was: NZ_SLZZ01000056.1); NZ_SLZZ01000057 (original name was: NZ_SLZZ01000057.1); NZ_SLZZ01000058 (original name was: NZ_SLZZ01000058.1); NZ_SLZZ01000059 (original name was: NZ_SLZZ01000059.1); NZ_SLZZ01000060 (original name was: NZ_SLZZ01000060.1); NZ_SLZZ01000061 (original name was: NZ_SLZZ01000061.1); NZ_SLZZ01000062 (original name was: NZ_SLZZ01000062.1); NZ_SLZZ01000063 (original name was: NZ_SLZZ01000063.1); NZ_SLZZ01000064 (original name was: NZ_SLZZ01000064.1); NZ_SLZZ01000065 (original name was: NZ_SLZZ01000065.1); NZ_SLZZ01000066 (original name was: NZ_SLZZ01000066.1); NZ_SLZZ01000067 (original name was: NZ_SLZZ01000067.1); NZ_SLZZ01000068 (original name was: NZ_SLZZ01000068.1); NZ_SLZZ01000069 (original name was: NZ_SLZZ01000069.1); NZ_SLZZ01000070 (original name was: NZ_SLZZ01000070.1)

Compact view

c00002_NZ_SLZZ.. - Region 1 - Hydroxy-L-proline2proline

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Location: 22,881 - 47,316 nt. (total: 24,436 nt) Show pHMM detection rules used

Hydroxy-L-proline2proline: ((PFL_proline or cds(PFL-like and Gly_radical)) and Radical_SAM and P5CR_dimer and F420_oxidored)

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c00003_NZ_SLZZ.. - Region 1 - fatty_acids-unassigned

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Location: 1 - 13,197 nt. (total: 13,197 nt) Show pHMM detection rules used

Region on contig edge.

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

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c00003_NZ_SLZZ.. - Region 2 - GR_eut-pdu-related

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Location: 78,596 - 109,403 nt. (total: 30,808 nt) Show pHMM detection rules used

GR_eut-pdu-related: (minimum(1, [Gly_430_pcre, Gly_radical, Gly_radical_scatole, PFL-like, PFL_6_pcresol, PFL_acetate1, PFL_acetate2, PFL_proline, PFL_toluene]) and minimum(2, [Aldedh, EutN_CcmL, EutQ, PTAC, PduV-EutP]) and not (PFL_9_tma or Gly_8-9_TMA or NRDD) and not EutB and not EutC and not (POR or POR_N or PFOR_II))

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c00004_NZ_SLZZ.. - Region 1 - Oxidative_glycerol

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Location: 1 - 23,037 nt. (total: 23,037 nt) Show pHMM detection rules used

Region on contig edge.

Oxidative_glycerol: ((Fe-ADH or Fe-ADH_2) and Dak1 and Dak2)

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c00005_NZ_SLZZ.. - Region 1 - Ech_complex

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Location: 132,067 - 156,726 nt. (total: 24,660 nt) Show pHMM detection rules used

Ech_complex: (NADHdh and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and Proton_antipo_M and Proton_antipo_N and not (Oxidored_q4 or Oxidored_q3 or Molybdopterin or Molydop_binding))

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c00007_NZ_SLZZ.. - Region 1 - Others_HGD_unassigned

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Location: 103,104 - 127,423 nt. (total: 24,320 nt) Show pHMM detection rules used

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

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c00009_NZ_SLZZ.. - Region 1 - Rnf_complex

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Location: 22,027 - 45,543 nt. (total: 23,517 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

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c00009_NZ_SLZZ.. - Region 2 - Rnf_complex

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Location: 98,038 - 128,687 nt. (total: 30,650 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

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c00011_NZ_SLZZ.. - Region 1 - proline2aminovalerate

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Location: 67,971 - 100,855 nt. (total: 32,885 nt) Show pHMM detection rules used

proline2aminovalerate: (Proline_reductase and (Pro_racemase or GRDB) and not ACP_syn_III_C)

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c00015_NZ_SLZZ.. - Region 1 - Oxidative_glycerol

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Location: 30,954 - 53,853 nt. (total: 22,900 nt) Show pHMM detection rules used

Oxidative_glycerol: ((Fe-ADH or Fe-ADH_2) and Dak1 and Dak2)

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c00019_NZ_SLZZ.. - Region 1 - Others_HGD_unassigned

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Location: 19,600 - 49,468 nt. (total: 29,869 nt) Show pHMM detection rules used

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

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c00021_NZ_SLZZ.. - Region 1 - PFOR_II_pathway

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Location: 25,757 - 49,299 nt. (total: 23,543 nt) Show pHMM detection rules used

PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

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c00038_NZ_SLZZ.. - Region 1 - TPP_AA_metabolism

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Location: 7,049 - 25,827 nt. (total: 18,779 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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c00040_NZ_SLZZ.. - Region 1 - Pyruvate2acetate-formate

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Location: 1 - 21,207 nt. (total: 21,207 nt) Show pHMM detection rules used

Region on contig edge.

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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