GCF_004343035.1_ASM434303v1_genomic - 5 region(s)

Identified primary metabolite regions

NZ_SMCQ01000002 (original name was: NZ_SMCQ01000002.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 2.1	Rnf_complex	E-MGC	22,615	48,055	Rnf complex C. sporogenes	RNF	66%

NZ_SMCQ01000003 (original name was: NZ_SMCQ01000003.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 3.1	Pyruvate2acetate-formate	SCFA	82,773	105,849	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

NZ_SMCQ01000017 (original name was: NZ_SMCQ01000017.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 17.1	Others_HGD_unassigned	Putative	3,222	27,469

NZ_SMCQ01000018 (original name was: NZ_SMCQ01000018.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 18.1	TPP_AA_metabolism	Putative	3,460	31,313

NZ_SMCQ01000038 (original name was: NZ_SMCQ01000038.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 38.1	Flavoenzyme_sugar_catabolism	Putative	1	19,790

No primary metabolite regions were found in these records:: NZ_SMCQ01000001 (original name was: NZ_SMCQ01000001.1); NZ_SMCQ01000004 (original name was: NZ_SMCQ01000004.1); NZ_SMCQ01000005 (original name was: NZ_SMCQ01000005.1); NZ_SMCQ01000006 (original name was: NZ_SMCQ01000006.1); NZ_SMCQ01000007 (original name was: NZ_SMCQ01000007.1); NZ_SMCQ01000008 (original name was: NZ_SMCQ01000008.1); NZ_SMCQ01000009 (original name was: NZ_SMCQ01000009.1); NZ_SMCQ01000010 (original name was: NZ_SMCQ01000010.1); NZ_SMCQ01000011 (original name was: NZ_SMCQ01000011.1); NZ_SMCQ01000012 (original name was: NZ_SMCQ01000012.1); NZ_SMCQ01000013 (original name was: NZ_SMCQ01000013.1); NZ_SMCQ01000014 (original name was: NZ_SMCQ01000014.1); NZ_SMCQ01000015 (original name was: NZ_SMCQ01000015.1); NZ_SMCQ01000016 (original name was: NZ_SMCQ01000016.1); NZ_SMCQ01000019 (original name was: NZ_SMCQ01000019.1); NZ_SMCQ01000020 (original name was: NZ_SMCQ01000020.1); NZ_SMCQ01000021 (original name was: NZ_SMCQ01000021.1); NZ_SMCQ01000022 (original name was: NZ_SMCQ01000022.1); NZ_SMCQ01000023 (original name was: NZ_SMCQ01000023.1); NZ_SMCQ01000024 (original name was: NZ_SMCQ01000024.1); NZ_SMCQ01000025 (original name was: NZ_SMCQ01000025.1); NZ_SMCQ01000026 (original name was: NZ_SMCQ01000026.1); NZ_SMCQ01000027 (original name was: NZ_SMCQ01000027.1); NZ_SMCQ01000028 (original name was: NZ_SMCQ01000028.1); NZ_SMCQ01000029 (original name was: NZ_SMCQ01000029.1); NZ_SMCQ01000030 (original name was: NZ_SMCQ01000030.1); NZ_SMCQ01000031 (original name was: NZ_SMCQ01000031.1); NZ_SMCQ01000032 (original name was: NZ_SMCQ01000032.1); NZ_SMCQ01000033 (original name was: NZ_SMCQ01000033.1); NZ_SMCQ01000034 (original name was: NZ_SMCQ01000034.1); NZ_SMCQ01000035 (original name was: NZ_SMCQ01000035.1); NZ_SMCQ01000036 (original name was: NZ_SMCQ01000036.1); NZ_SMCQ01000037 (original name was: NZ_SMCQ01000037.1); NZ_SMCQ01000039 (original name was: NZ_SMCQ01000039.1); NZ_SMCQ01000040 (original name was: NZ_SMCQ01000040.1); NZ_SMCQ01000041 (original name was: NZ_SMCQ01000041.1); NZ_SMCQ01000042 (original name was: NZ_SMCQ01000042.1); NZ_SMCQ01000043 (original name was: NZ_SMCQ01000043.1); NZ_SMCQ01000044 (original name was: NZ_SMCQ01000044.1); NZ_SMCQ01000045 (original name was: NZ_SMCQ01000045.1); NZ_SMCQ01000046 (original name was: NZ_SMCQ01000046.1); NZ_SMCQ01000047 (original name was: NZ_SMCQ01000047.1); NZ_SMCQ01000048 (original name was: NZ_SMCQ01000048.1); NZ_SMCQ01000049 (original name was: NZ_SMCQ01000049.1); NZ_SMCQ01000050 (original name was: NZ_SMCQ01000050.1); NZ_SMCQ01000051 (original name was: NZ_SMCQ01000051.1); NZ_SMCQ01000052 (original name was: NZ_SMCQ01000052.1); NZ_SMCQ01000053 (original name was: NZ_SMCQ01000053.1); NZ_SMCQ01000054 (original name was: NZ_SMCQ01000054.1); NZ_SMCQ01000055 (original name was: NZ_SMCQ01000055.1); NZ_SMCQ01000056 (original name was: NZ_SMCQ01000056.1)

Compact view

c00002_NZ_SMCQ.. - Region 1 - Rnf_complex

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Location: 22,615 - 48,055 nt. (total: 25,441 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

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c00003_NZ_SMCQ.. - Region 1 - Pyruvate2acetate-formate

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Location: 82,773 - 105,849 nt. (total: 23,077 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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c00017_NZ_SMCQ.. - Region 1 - Others_HGD_unassigned

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Location: 3,222 - 27,469 nt. (total: 24,248 nt) Show pHMM detection rules used

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

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c00018_NZ_SMCQ.. - Region 1 - TPP_AA_metabolism

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Location: 3,460 - 31,313 nt. (total: 27,854 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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c00038_NZ_SMCQ.. - Region 1 - Flavoenzyme_sugar_catabolism

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Location: 1 - 19,790 nt. (total: 19,790 nt) Show pHMM detection rules used

Region on contig edge.

Flavoenzyme_sugar_catabolism: ((cds(Pyr_redox_2 and Oxidored_FMN) or baiCD or baiH) and minimum(2, [Alpha-amylase, Glyco_hydro_1, Glyco_hydro_25, Glyco_hydro_36, Glycos_transf_3, PTS_EIIC, Polysacc_deac_1]))

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