GCF_003464225.1_ASM346422v1_genomic - 3 region(s)

Identified primary metabolite regions

NZ_QRYH01000002 (original name was: NZ_QRYH01000002.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 12.1	acetate2butyrate,Rnf_complex	E-MGC	119,980	159,753	Acetate to butyrate C. sporogenes	BUT	100%

NZ_QRYH01000006 (original name was: NZ_QRYH01000006.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 56.1	Others_HGD_unassigned	Putative	44,947	69,124

NZ_QRYH01000007 (original name was: NZ_QRYH01000007.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 60.1	Pyruvate2acetate-formate	SCFA	38,507	61,498	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

No primary metabolite regions were found in these records:: NZ_QRYH01000001 (original name was: NZ_QRYH01000001.1); NZ_QRYH01000010 (original name was: NZ_QRYH01000010.1); NZ_QRYH01000011 (original name was: NZ_QRYH01000011.1); NZ_QRYH01000012 (original name was: NZ_QRYH01000012.1); NZ_QRYH01000013 (original name was: NZ_QRYH01000013.1); NZ_QRYH01000014 (original name was: NZ_QRYH01000014.1); NZ_QRYH01000015 (original name was: NZ_QRYH01000015.1); NZ_QRYH01000016 (original name was: NZ_QRYH01000016.1); NZ_QRYH01000017 (original name was: NZ_QRYH01000017.1); NZ_QRYH01000018 (original name was: NZ_QRYH01000018.1); NZ_QRYH01000019 (original name was: NZ_QRYH01000019.1); NZ_QRYH01000020 (original name was: NZ_QRYH01000020.1); NZ_QRYH01000021 (original name was: NZ_QRYH01000021.1); NZ_QRYH01000022 (original name was: NZ_QRYH01000022.1); NZ_QRYH01000023 (original name was: NZ_QRYH01000023.1); NZ_QRYH01000024 (original name was: NZ_QRYH01000024.1); NZ_QRYH01000025 (original name was: NZ_QRYH01000025.1); NZ_QRYH01000026 (original name was: NZ_QRYH01000026.1); NZ_QRYH01000027 (original name was: NZ_QRYH01000027.1); NZ_QRYH01000028 (original name was: NZ_QRYH01000028.1); NZ_QRYH01000029 (original name was: NZ_QRYH01000029.1); NZ_QRYH01000003 (original name was: NZ_QRYH01000003.1); NZ_QRYH01000030 (original name was: NZ_QRYH01000030.1); NZ_QRYH01000031 (original name was: NZ_QRYH01000031.1); NZ_QRYH01000032 (original name was: NZ_QRYH01000032.1); NZ_QRYH01000033 (original name was: NZ_QRYH01000033.1); NZ_QRYH01000034 (original name was: NZ_QRYH01000034.1); NZ_QRYH01000035 (original name was: NZ_QRYH01000035.1); NZ_QRYH01000036 (original name was: NZ_QRYH01000036.1); NZ_QRYH01000037 (original name was: NZ_QRYH01000037.1); NZ_QRYH01000038 (original name was: NZ_QRYH01000038.1); NZ_QRYH01000039 (original name was: NZ_QRYH01000039.1); NZ_QRYH01000004 (original name was: NZ_QRYH01000004.1); NZ_QRYH01000040 (original name was: NZ_QRYH01000040.1); NZ_QRYH01000041 (original name was: NZ_QRYH01000041.1); NZ_QRYH01000042 (original name was: NZ_QRYH01000042.1); NZ_QRYH01000043 (original name was: NZ_QRYH01000043.1); NZ_QRYH01000044 (original name was: NZ_QRYH01000044.1); NZ_QRYH01000045 (original name was: NZ_QRYH01000045.1); NZ_QRYH01000046 (original name was: NZ_QRYH01000046.1); NZ_QRYH01000047 (original name was: NZ_QRYH01000047.1); NZ_QRYH01000048 (original name was: NZ_QRYH01000048.1); NZ_QRYH01000049 (original name was: NZ_QRYH01000049.1); NZ_QRYH01000005 (original name was: NZ_QRYH01000005.1); NZ_QRYH01000050 (original name was: NZ_QRYH01000050.1); NZ_QRYH01000051 (original name was: NZ_QRYH01000051.1); NZ_QRYH01000052 (original name was: NZ_QRYH01000052.1); NZ_QRYH01000053 (original name was: NZ_QRYH01000053.1); NZ_QRYH01000054 (original name was: NZ_QRYH01000054.1); NZ_QRYH01000055 (original name was: NZ_QRYH01000055.1); NZ_QRYH01000056 (original name was: NZ_QRYH01000056.1); NZ_QRYH01000057 (original name was: NZ_QRYH01000057.1); NZ_QRYH01000058 (original name was: NZ_QRYH01000058.1); NZ_QRYH01000059 (original name was: NZ_QRYH01000059.1); NZ_QRYH01000060 (original name was: NZ_QRYH01000060.1); NZ_QRYH01000061 (original name was: NZ_QRYH01000061.1); NZ_QRYH01000062 (original name was: NZ_QRYH01000062.1); NZ_QRYH01000008 (original name was: NZ_QRYH01000008.1); NZ_QRYH01000009 (original name was: NZ_QRYH01000009.1)

Compact view

c00012_NZ_QRYH.. - Region 1 - Rnf_complex,acetate2butyrate

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Location: 119,980 - 159,753 nt. (total: 39,774 nt) Show pHMM detection rules used

acetate2butyrate: (not (POR or POR_N or PFOR_II) and minimum(4, [Acyl-CoA_dh_1, Acyl-CoA_dh_2, ECH_2, ETF, ETF_alpha, HCDH_N, Thiolase_N, ketoacyl-synt]) and HCDH and minimum(1, [EC1_2-faecali, ECH1_Enoyl_CoA_DH1, ECH1_Enoyl_CoA_DH2, ECH1_Enoyl_CoA_DH3, ECH1_Enoyl_CoA_DH4, Thiolase_C]))
Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

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core biosynthetic genes

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transport-related genes

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c00056_NZ_QRYH.. - Region 1 - Others_HGD_unassigned

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Location: 44,947 - 69,124 nt. (total: 24,178 nt) Show pHMM detection rules used

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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No matches found.

c00060_NZ_QRYH.. - Region 1 - Pyruvate2acetate-formate

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Location: 38,507 - 61,498 nt. (total: 22,992 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters