GCF_003096415.1_ASM309641v1_genomic - 7 region(s)

Identified primary metabolite regions

NZ_QEKH01000002 (original name was: NZ_QEKH01000002.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 2.1	PFOR_II_pathway	SCFA	118,573	142,097	PFOR II pathway B. thetaiotaomicron	PFORII	100%

NZ_QEKH01000006 (original name was: NZ_QEKH01000006.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 6.1	Pyruvate2acetate-formate	SCFA	1	21,593	Pyruvate to acetate-formate E. coli	PFL_acetate	100%
Region 6.2	Rnf_complex	E-MGC	120,819	146,085	Rnf complex C. sporogenes	RNF	100%

NZ_QEKH01000012 (original name was: NZ_QEKH01000012.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 12.1	fatty_acids-unassigned	Putative	44,038	81,363

NZ_QEKH01000021 (original name was: NZ_QEKH01000021.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 21.1	Putrescine2spermidine	Aliphatic_amine	52,582	73,415

NZ_QEKH01000027 (original name was: NZ_QEKH01000027.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 27.1	Others_HGD_unassigned	Putative	29,682	54,130

NZ_QEKH01000057 (original name was: NZ_QEKH01000057.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 57.1	porA	SCFA	1	17,193	porA C. sporogenes	POR	40%

No primary metabolite regions were found in these records:: NZ_QEKH01000001 (original name was: NZ_QEKH01000001.1); NZ_QEKH01000003 (original name was: NZ_QEKH01000003.1); NZ_QEKH01000004 (original name was: NZ_QEKH01000004.1); NZ_QEKH01000005 (original name was: NZ_QEKH01000005.1); NZ_QEKH01000007 (original name was: NZ_QEKH01000007.1); NZ_QEKH01000008 (original name was: NZ_QEKH01000008.1); NZ_QEKH01000009 (original name was: NZ_QEKH01000009.1); NZ_QEKH01000010 (original name was: NZ_QEKH01000010.1); NZ_QEKH01000011 (original name was: NZ_QEKH01000011.1); NZ_QEKH01000013 (original name was: NZ_QEKH01000013.1); NZ_QEKH01000014 (original name was: NZ_QEKH01000014.1); NZ_QEKH01000015 (original name was: NZ_QEKH01000015.1); NZ_QEKH01000016 (original name was: NZ_QEKH01000016.1); NZ_QEKH01000017 (original name was: NZ_QEKH01000017.1); NZ_QEKH01000018 (original name was: NZ_QEKH01000018.1); NZ_QEKH01000019 (original name was: NZ_QEKH01000019.1); NZ_QEKH01000020 (original name was: NZ_QEKH01000020.1); NZ_QEKH01000022 (original name was: NZ_QEKH01000022.1); NZ_QEKH01000023 (original name was: NZ_QEKH01000023.1); NZ_QEKH01000024 (original name was: NZ_QEKH01000024.1); NZ_QEKH01000025 (original name was: NZ_QEKH01000025.1); NZ_QEKH01000026 (original name was: NZ_QEKH01000026.1); NZ_QEKH01000028 (original name was: NZ_QEKH01000028.1); NZ_QEKH01000029 (original name was: NZ_QEKH01000029.1); NZ_QEKH01000030 (original name was: NZ_QEKH01000030.1); NZ_QEKH01000031 (original name was: NZ_QEKH01000031.1); NZ_QEKH01000032 (original name was: NZ_QEKH01000032.1); NZ_QEKH01000033 (original name was: NZ_QEKH01000033.1); NZ_QEKH01000034 (original name was: NZ_QEKH01000034.1); NZ_QEKH01000035 (original name was: NZ_QEKH01000035.1); NZ_QEKH01000036 (original name was: NZ_QEKH01000036.1); NZ_QEKH01000037 (original name was: NZ_QEKH01000037.1); NZ_QEKH01000038 (original name was: NZ_QEKH01000038.1); NZ_QEKH01000039 (original name was: NZ_QEKH01000039.1); NZ_QEKH01000040 (original name was: NZ_QEKH01000040.1); NZ_QEKH01000041 (original name was: NZ_QEKH01000041.1); NZ_QEKH01000042 (original name was: NZ_QEKH01000042.1); NZ_QEKH01000043 (original name was: NZ_QEKH01000043.1); NZ_QEKH01000044 (original name was: NZ_QEKH01000044.1); NZ_QEKH01000045 (original name was: NZ_QEKH01000045.1); NZ_QEKH01000046 (original name was: NZ_QEKH01000046.1); NZ_QEKH01000047 (original name was: NZ_QEKH01000047.1); NZ_QEKH01000048 (original name was: NZ_QEKH01000048.1); NZ_QEKH01000049 (original name was: NZ_QEKH01000049.1); NZ_QEKH01000050 (original name was: NZ_QEKH01000050.1); NZ_QEKH01000051 (original name was: NZ_QEKH01000051.1); NZ_QEKH01000052 (original name was: NZ_QEKH01000052.1); NZ_QEKH01000053 (original name was: NZ_QEKH01000053.1); NZ_QEKH01000054 (original name was: NZ_QEKH01000054.1); NZ_QEKH01000055 (original name was: NZ_QEKH01000055.1); NZ_QEKH01000056 (original name was: NZ_QEKH01000056.1); NZ_QEKH01000058 (original name was: NZ_QEKH01000058.1); NZ_QEKH01000059 (original name was: NZ_QEKH01000059.1); NZ_QEKH01000060 (original name was: NZ_QEKH01000060.1); NZ_QEKH01000061 (original name was: NZ_QEKH01000061.1); NZ_QEKH01000062 (original name was: NZ_QEKH01000062.1); NZ_QEKH01000063 (original name was: NZ_QEKH01000063.1); NZ_QEKH01000064 (original name was: NZ_QEKH01000064.1); NZ_QEKH01000065 (original name was: NZ_QEKH01000065.1); NZ_QEKH01000066 (original name was: NZ_QEKH01000066.1); NZ_QEKH01000067 (original name was: NZ_QEKH01000067.1); NZ_QEKH01000068 (original name was: NZ_QEKH01000068.1); NZ_QEKH01000069 (original name was: NZ_QEKH01000069.1); NZ_QEKH01000070 (original name was: NZ_QEKH01000070.1); NZ_QEKH01000071 (original name was: NZ_QEKH01000071.1); NZ_QEKH01000072 (original name was: NZ_QEKH01000072.1); NZ_QEKH01000073 (original name was: NZ_QEKH01000073.1); NZ_QEKH01000074 (original name was: NZ_QEKH01000074.1); NZ_QEKH01000075 (original name was: NZ_QEKH01000075.1); NZ_QEKH01000076 (original name was: NZ_QEKH01000076.1); NZ_QEKH01000077 (original name was: NZ_QEKH01000077.1); NZ_QEKH01000078 (original name was: NZ_QEKH01000078.1); NZ_QEKH01000079 (original name was: NZ_QEKH01000079.1); NZ_QEKH01000080 (original name was: NZ_QEKH01000080.1); NZ_QEKH01000081 (original name was: NZ_QEKH01000081.1); NZ_QEKH01000082 (original name was: NZ_QEKH01000082.1); NZ_QEKH01000083 (original name was: NZ_QEKH01000083.1); NZ_QEKH01000084 (original name was: NZ_QEKH01000084.1); NZ_QEKH01000085 (original name was: NZ_QEKH01000085.1); NZ_QEKH01000086 (original name was: NZ_QEKH01000086.1); NZ_QEKH01000087 (original name was: NZ_QEKH01000087.1)

Compact view

c00002_NZ_QEKH.. - Region 1 - PFOR_II_pathway

Download region GenBank file

Location: 118,573 - 142,097 nt. (total: 23,525 nt) Show pHMM detection rules used

PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

c00006_NZ_QEKH.. - Region 1 - Pyruvate2acetate-formate

Download region GenBank file

Location: 1 - 21,593 nt. (total: 21,593 nt) Show pHMM detection rules used

Region on contig edge.

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

c00006_NZ_QEKH.. - Region 2 - Rnf_complex

Download region GenBank file

Location: 120,819 - 146,085 nt. (total: 25,267 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

c00012_NZ_QEKH.. - Region 1 - fatty_acids-unassigned

Download region GenBank file

Location: 44,038 - 81,363 nt. (total: 37,326 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.

c00021_NZ_QEKH.. - Region 1 - Putrescine2spermidine

Download region GenBank file

Location: 52,582 - 73,415 nt. (total: 20,834 nt) Show pHMM detection rules used

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.

c00027_NZ_QEKH.. - Region 1 - Others_HGD_unassigned

Download region GenBank file

Location: 29,682 - 54,130 nt. (total: 24,449 nt) Show pHMM detection rules used

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.

c00057_NZ_QEKH.. - Region 1 - porA

Download region GenBank file

Location: 1 - 17,193 nt. (total: 17,193 nt) Show pHMM detection rules used

Region on contig edge.

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters