GCF_006539825.1_ASM653982v1_genomic - 7 region(s)

Identified primary metabolite regions

NZ_BJNT01000001 (original name was: NZ_BJNT01000001.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 1.1	TPP_AA_metabolism	Putative	1,210	39,408

NZ_BJNT01000003 (original name was: NZ_BJNT01000003.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 3.1	fatty_acids-unassigned	Putative	70,645	105,785	Caffeate respiration A. woodii	CAF	40%

NZ_BJNT01000005 (original name was: NZ_BJNT01000005.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 5.1	Glycine_cleavage	Other	32,237	56,743	Glycine cleavage C. sticklandii	GLY	60%

NZ_BJNT01000015 (original name was: NZ_BJNT01000015.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 15.1	TPP_fatty_acids,fatty_acids-unassigned	Putative	79,317	108,698

NZ_BJNT01000016 (original name was: NZ_BJNT01000016.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 16.1	Nitrate_reductase	E-MGC	1	32,507	Nitrate reductase E. coli	NIR	40%

NZ_BJNT01000024 (original name was: NZ_BJNT01000024.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 23.1	fatty_acids-unassigned	Putative	15,471	44,258

NZ_BJNT01000026 (original name was: NZ_BJNT01000026.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 25.1	Fumarate2succinate	SCFA	1	14,006	Fumarate to succinate B. thetaiotaomicron	SUC	66%

Region	Type	Class	From	To	Most similar known cluster	Similarity
Region 1.1	TPP_AA_metabolism	Putative	1,210	39,408
Region 3.1	fatty_acids-unassigned	Putative	70,645	105,785	Caffeate respiration A. woodii	CAF	40%
Region 5.1	Glycine_cleavage	Other	32,237	56,743	Glycine cleavage C. sticklandii	GLY	60%
Region 15.1	TPP_fatty_acids,fatty_acids-unassigned	Putative	79,317	108,698
Region 16.1	Nitrate_reductase	E-MGC	1	32,507	Nitrate reductase E. coli	NIR	40%
Region 23.1	fatty_acids-unassigned	Putative	15,471	44,258
Region 25.1	Fumarate2succinate	SCFA	1	14,006	Fumarate to succinate B. thetaiotaomicron	SUC	66%

No primary metabolite regions were found in these records:: NZ_BJNT01000002 (original name was: NZ_BJNT01000002.1); NZ_BJNT01000004 (original name was: NZ_BJNT01000004.1); NZ_BJNT01000006 (original name was: NZ_BJNT01000006.1); NZ_BJNT01000007 (original name was: NZ_BJNT01000007.1); NZ_BJNT01000008 (original name was: NZ_BJNT01000008.1); NZ_BJNT01000009 (original name was: NZ_BJNT01000009.1); NZ_BJNT01000010 (original name was: NZ_BJNT01000010.1); NZ_BJNT01000011 (original name was: NZ_BJNT01000011.1); NZ_BJNT01000012 (original name was: NZ_BJNT01000012.1); NZ_BJNT01000013 (original name was: NZ_BJNT01000013.1); NZ_BJNT01000014 (original name was: NZ_BJNT01000014.1); NZ_BJNT01000017 (original name was: NZ_BJNT01000017.1); NZ_BJNT01000018 (original name was: NZ_BJNT01000018.1); NZ_BJNT01000019 (original name was: NZ_BJNT01000019.1); NZ_BJNT01000020 (original name was: NZ_BJNT01000020.1); NZ_BJNT01000021 (original name was: NZ_BJNT01000021.1); NZ_BJNT01000022 (original name was: NZ_BJNT01000022.1); NZ_BJNT01000025 (original name was: NZ_BJNT01000025.1); NZ_BJNT01000027 (original name was: NZ_BJNT01000027.1); NZ_BJNT01000028 (original name was: NZ_BJNT01000028.1); NZ_BJNT01000029 (original name was: NZ_BJNT01000029.1); NZ_BJNT01000030 (original name was: NZ_BJNT01000030.1); NZ_BJNT01000031 (original name was: NZ_BJNT01000031.1); NZ_BJNT01000032 (original name was: NZ_BJNT01000032.1); NZ_BJNT01000033 (original name was: NZ_BJNT01000033.1); NZ_BJNT01000034 (original name was: NZ_BJNT01000034.1); NZ_BJNT01000035 (original name was: NZ_BJNT01000035.1); NZ_BJNT01000036 (original name was: NZ_BJNT01000036.1); NZ_BJNT01000037 (original name was: NZ_BJNT01000037.1); NZ_BJNT01000038 (original name was: NZ_BJNT01000038.1); NZ_BJNT01000039 (original name was: NZ_BJNT01000039.1); NZ_BJNT01000040 (original name was: NZ_BJNT01000040.1); NZ_BJNT01000041 (original name was: NZ_BJNT01000041.1); NZ_BJNT01000042 (original name was: NZ_BJNT01000042.1); NZ_BJNT01000043 (original name was: NZ_BJNT01000043.1); NZ_BJNT01000044 (original name was: NZ_BJNT01000044.1); NZ_BJNT01000045 (original name was: NZ_BJNT01000045.1); NZ_BJNT01000046 (original name was: NZ_BJNT01000046.1); NZ_BJNT01000047 (original name was: NZ_BJNT01000047.1); NZ_BJNT01000048 (original name was: NZ_BJNT01000048.1); NZ_BJNT01000049 (original name was: NZ_BJNT01000049.1); NZ_BJNT01000050 (original name was: NZ_BJNT01000050.1); NZ_BJNT01000051 (original name was: NZ_BJNT01000051.1); NZ_BJNT01000052 (original name was: NZ_BJNT01000052.1); NZ_BJNT01000053 (original name was: NZ_BJNT01000053.1); NZ_BJNT01000054 (original name was: NZ_BJNT01000054.1); NZ_BJNT01000055 (original name was: NZ_BJNT01000055.1); NZ_BJNT01000056 (original name was: NZ_BJNT01000056.1); NZ_BJNT01000057 (original name was: NZ_BJNT01000057.1); NZ_BJNT01000058 (original name was: NZ_BJNT01000058.1); NZ_BJNT01000059 (original name was: NZ_BJNT01000059.1)

Compact view

c00001_NZ_BJNT.. - Region 1 - TPP_AA_metabolism

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Location: 1,210 - 39,408 nt. (total: 38,199 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

TTA codons

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00003_NZ_BJNT.. - Region 1 - fatty_acids-unassigned

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Location: 70,645 - 105,785 nt. (total: 35,141 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

TTA codons

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00005_NZ_BJNT.. - Region 1 - Glycine_cleavage

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Location: 32,237 - 56,743 nt. (total: 24,507 nt) Show pHMM detection rules used

Glycine_cleavage: (minimum(2, [Aminotran_5, GCV_H, GCV_T, GDC-P, SoxG]) and GCV_H and GCV_T_C)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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c00015_NZ_BJNT.. - Region 1 - TPP_fatty_acids,fatty_acids-unassigned

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Location: 79,317 - 108,698 nt. (total: 29,382 nt) Show pHMM detection rules used

TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))
fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

TTA codons

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00016_NZ_BJNT.. - Region 1 - Nitrate_reductase

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Location: 1 - 32,507 nt. (total: 32,507 nt) Show pHMM detection rules used

Region on contig edge.

Nitrate_reductase: (Nitr_red_bet_C and Nitrate_red_del and Nitrate_red_gam and Molybdopterin and minimum(2, [Fer4_11, Molybdopterin, Molydop_binding, Nitr_red_alph_N]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

TTA codons

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00023_NZ_BJNT.. - Region 1 - fatty_acids-unassigned

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Location: 15,471 - 44,258 nt. (total: 28,788 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

TTA codons

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00025_NZ_BJNT.. - Region 1 - Fumarate2succinate

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Location: 1 - 14,006 nt. (total: 14,006 nt) Show pHMM detection rules used

Region on contig edge.

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

TTA codons

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters