GCF_000375365.1_ASM37536v1_genomic - 5 region(s)

Identified primary metabolite regions

NZ_AQXB01000001 (original name was: NZ_AQXB01000001.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 1.1	Glycine_cleavage	Other	282,443	306,910	Glycine cleavage C. sticklandii	GLY	60%
Region 1.2	histidine2glutamate_hutHGIU_operon	Other	467,627	499,421	Histidine to glutamate K. pneumoniae	GLU	60%

NZ_AQXB01000004 (original name was: NZ_AQXB01000004.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 4.1	succinate2propionate	SCFA	131,540	164,162

NZ_AQXB01000005 (original name was: NZ_AQXB01000005.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 5.1	TPP_AA_metabolism	Putative	69,172	95,451

NZ_AQXB01000008 (original name was: NZ_AQXB01000008.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 8.1	Fumarate2succinate	SCFA	23,336	46,865	Fumarate to succinate B. thetaiotaomicron	SUC	66%

No primary metabolite regions were found in these records:: NZ_AQXB01000002 (original name was: NZ_AQXB01000002.1); NZ_AQXB01000003 (original name was: NZ_AQXB01000003.1); NZ_AQXB01000006 (original name was: NZ_AQXB01000006.1); NZ_AQXB01000007 (original name was: NZ_AQXB01000007.1); NZ_AQXB01000009 (original name was: NZ_AQXB01000009.1); NZ_AQXB01000010 (original name was: NZ_AQXB01000010.1); NZ_AQXB01000011 (original name was: NZ_AQXB01000011.1); NZ_AQXB01000012 (original name was: NZ_AQXB01000012.1); NZ_AQXB01000013 (original name was: NZ_AQXB01000013.1); NZ_AQXB01000014 (original name was: NZ_AQXB01000014.1); NZ_AQXB01000015 (original name was: NZ_AQXB01000015.1); NZ_AQXB01000016 (original name was: NZ_AQXB01000016.1); NZ_AQXB01000017 (original name was: NZ_AQXB01000017.1); NZ_AQXB01000018 (original name was: NZ_AQXB01000018.1); NZ_AQXB01000019 (original name was: NZ_AQXB01000019.1); NZ_AQXB01000020 (original name was: NZ_AQXB01000020.1); NZ_AQXB01000021 (original name was: NZ_AQXB01000021.1); NZ_AQXB01000022 (original name was: NZ_AQXB01000022.1); NZ_AQXB01000023 (original name was: NZ_AQXB01000023.1); NZ_AQXB01000024 (original name was: NZ_AQXB01000024.1); NZ_AQXB01000025 (original name was: NZ_AQXB01000025.1); NZ_AQXB01000026 (original name was: NZ_AQXB01000026.1); NZ_AQXB01000027 (original name was: NZ_AQXB01000027.1); NZ_AQXB01000028 (original name was: NZ_AQXB01000028.1); NZ_AQXB01000029 (original name was: NZ_AQXB01000029.1); NZ_AQXB01000030 (original name was: NZ_AQXB01000030.1); NZ_AQXB01000031 (original name was: NZ_AQXB01000031.1); NZ_AQXB01000032 (original name was: NZ_AQXB01000032.1); NZ_AQXB01000033 (original name was: NZ_AQXB01000033.1); NZ_AQXB01000034 (original name was: NZ_AQXB01000034.1); NZ_AQXB01000035 (original name was: NZ_AQXB01000035.1); NZ_AQXB01000036 (original name was: NZ_AQXB01000036.1); NZ_AQXB01000037 (original name was: NZ_AQXB01000037.1); NZ_AQXB01000038 (original name was: NZ_AQXB01000038.1); NZ_AQXB01000039 (original name was: NZ_AQXB01000039.1)

Compact view

c00001_NZ_AQXB.. - Region 1 - Glycine_cleavage

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Location: 282,443 - 306,910 nt. (total: 24,468 nt) Show pHMM detection rules used

Glycine_cleavage: (minimum(2, [Aminotran_5, GCV_H, GCV_T, GDC-P, SoxG]) and GCV_H and GCV_T_C)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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c00001_NZ_AQXB.. - Region 2 - histidine2glutamate_hutHGIU_operon

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Location: 467,627 - 499,421 nt. (total: 31,795 nt) Show pHMM detection rules used

histidine2glutamate_hutHGIU_operon: (minimum(3, [Amidohydro_1, Amidohydro_3, Arginase, FGase, Urocanase]) and Lyase_aromatic and Urocanase_C)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

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other genes

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KnownClusterBlast

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c00004_NZ_AQXB.. - Region 1 - succinate2propionate

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Location: 131,540 - 164,162 nt. (total: 32,623 nt) Show pHMM detection rules used

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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KnownClusterBlast

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No matches found.

c00005_NZ_AQXB.. - Region 1 - TPP_AA_metabolism

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Location: 69,172 - 95,451 nt. (total: 26,280 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00008_NZ_AQXB.. - Region 1 - Fumarate2succinate

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Location: 23,336 - 46,865 nt. (total: 23,530 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

TTA codons

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Gene details

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KnownClusterBlast

Similar known gene clusters