GCF_027666165.1_ASM2766616v1_genomic - 6 region(s)

Identified primary metabolite regions

c00002_NZ_JAQE.. (original name was: NZ_JAQEHV010000010.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 2.1	Pyruvate2acetate-formate	SCFA	22,300	45,627	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

c00012_NZ_JAQE.. (original name was: NZ_JAQEHV010000002.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 12.1	TPP_AA_metabolism	Putative	70,085	95,957

c00034_NZ_JAQE.. (original name was: NZ_JAQEHV010000004.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 34.1	Rnf_complex	E-MGC	9,665	34,964	Rnf complex C. sporogenes	RNF	83%

c00045_NZ_JAQE.. (original name was: NZ_JAQEHV010000005.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 45.1	Others_HGD_unassigned	Putative	1	19,986

c00067_NZ_JAQE.. (original name was: NZ_JAQEHV010000007.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 67.1	Pyruvate2acetate-formate	SCFA	1,714	24,704	Pyruvate to acetate and formate C. acetobutylicum	PFL_acetate	100%
Region 67.2	PFOR_II_pathway	SCFA	29,011	52,685	PFOR II pathway B. thetaiotaomicron	PFORII	100%

No primary metabolite regions were found in these records:: c00001_NZ_JAQE.. (original name was: NZ_JAQEHV010000001.1); c00003_NZ_JAQE.. (original name was: NZ_JAQEHV010000011.1); c00004_NZ_JAQE.. (original name was: NZ_JAQEHV010000012.1); c00005_NZ_JAQE.. (original name was: NZ_JAQEHV010000013.1); c00006_NZ_JAQE.. (original name was: NZ_JAQEHV010000014.1); c00007_NZ_JAQE.. (original name was: NZ_JAQEHV010000015.1); c00008_NZ_JAQE.. (original name was: NZ_JAQEHV010000016.1); c00009_NZ_JAQE.. (original name was: NZ_JAQEHV010000017.1); c00010_NZ_JAQE.. (original name was: NZ_JAQEHV010000018.1); c00011_NZ_JAQE.. (original name was: NZ_JAQEHV010000019.1); c00013_NZ_JAQE.. (original name was: NZ_JAQEHV010000020.1); c00014_NZ_JAQE.. (original name was: NZ_JAQEHV010000021.1); c00015_NZ_JAQE.. (original name was: NZ_JAQEHV010000022.1); c00016_NZ_JAQE.. (original name was: NZ_JAQEHV010000023.1); c00017_NZ_JAQE.. (original name was: NZ_JAQEHV010000024.1); c00018_NZ_JAQE.. (original name was: NZ_JAQEHV010000025.1); c00019_NZ_JAQE.. (original name was: NZ_JAQEHV010000026.1); c00020_NZ_JAQE.. (original name was: NZ_JAQEHV010000027.1); c00021_NZ_JAQE.. (original name was: NZ_JAQEHV010000028.1); c00022_NZ_JAQE.. (original name was: NZ_JAQEHV010000029.1); c00023_NZ_JAQE.. (original name was: NZ_JAQEHV010000003.1); c00024_NZ_JAQE.. (original name was: NZ_JAQEHV010000030.1); c00025_NZ_JAQE.. (original name was: NZ_JAQEHV010000031.1); c00026_NZ_JAQE.. (original name was: NZ_JAQEHV010000032.1); c00027_NZ_JAQE.. (original name was: NZ_JAQEHV010000033.1); c00028_NZ_JAQE.. (original name was: NZ_JAQEHV010000034.1); c00029_NZ_JAQE.. (original name was: NZ_JAQEHV010000035.1); c00030_NZ_JAQE.. (original name was: NZ_JAQEHV010000036.1); c00031_NZ_JAQE.. (original name was: NZ_JAQEHV010000037.1); c00032_NZ_JAQE.. (original name was: NZ_JAQEHV010000038.1); c00033_NZ_JAQE.. (original name was: NZ_JAQEHV010000039.1); c00035_NZ_JAQE.. (original name was: NZ_JAQEHV010000040.1); c00036_NZ_JAQE.. (original name was: NZ_JAQEHV010000041.1); c00037_NZ_JAQE.. (original name was: NZ_JAQEHV010000042.1); c00038_NZ_JAQE.. (original name was: NZ_JAQEHV010000043.1); c00039_NZ_JAQE.. (original name was: NZ_JAQEHV010000044.1); c00040_NZ_JAQE.. (original name was: NZ_JAQEHV010000045.1); c00041_NZ_JAQE.. (original name was: NZ_JAQEHV010000046.1); c00042_NZ_JAQE.. (original name was: NZ_JAQEHV010000047.1); c00043_NZ_JAQE.. (original name was: NZ_JAQEHV010000048.1); c00044_NZ_JAQE.. (original name was: NZ_JAQEHV010000049.1); c00046_NZ_JAQE.. (original name was: NZ_JAQEHV010000050.1); c00047_NZ_JAQE.. (original name was: NZ_JAQEHV010000051.1); c00048_NZ_JAQE.. (original name was: NZ_JAQEHV010000052.1); c00049_NZ_JAQE.. (original name was: NZ_JAQEHV010000053.1); c00050_NZ_JAQE.. (original name was: NZ_JAQEHV010000054.1); c00051_NZ_JAQE.. (original name was: NZ_JAQEHV010000055.1); c00052_NZ_JAQE.. (original name was: NZ_JAQEHV010000056.1); c00053_NZ_JAQE.. (original name was: NZ_JAQEHV010000057.1); c00054_NZ_JAQE.. (original name was: NZ_JAQEHV010000058.1); c00055_NZ_JAQE.. (original name was: NZ_JAQEHV010000059.1); c00056_NZ_JAQE.. (original name was: NZ_JAQEHV010000006.1); c00057_NZ_JAQE.. (original name was: NZ_JAQEHV010000060.1); c00058_NZ_JAQE.. (original name was: NZ_JAQEHV010000061.1); c00059_NZ_JAQE.. (original name was: NZ_JAQEHV010000062.1); c00060_NZ_JAQE.. (original name was: NZ_JAQEHV010000063.1); c00061_NZ_JAQE.. (original name was: NZ_JAQEHV010000064.1); c00062_NZ_JAQE.. (original name was: NZ_JAQEHV010000065.1); c00063_NZ_JAQE.. (original name was: NZ_JAQEHV010000066.1); c00064_NZ_JAQE.. (original name was: NZ_JAQEHV010000067.1); c00065_NZ_JAQE.. (original name was: NZ_JAQEHV010000068.1); c00066_NZ_JAQE.. (original name was: NZ_JAQEHV010000069.1); c00068_NZ_JAQE.. (original name was: NZ_JAQEHV010000070.1); c00069_NZ_JAQE.. (original name was: NZ_JAQEHV010000071.1); c00070_NZ_JAQE.. (original name was: NZ_JAQEHV010000072.1); c00071_NZ_JAQE.. (original name was: NZ_JAQEHV010000008.1); c00072_NZ_JAQE.. (original name was: NZ_JAQEHV010000009.1)

Compact view

c00002_NZ_JAQE.. - Region 1 - Pyruvate2acetate-formate

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Location: 22,300 - 45,627 nt. (total: 23,328 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

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c00012_NZ_JAQE.. - Region 1 - TPP_AA_metabolism

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Location: 70,085 - 95,957 nt. (total: 25,873 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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core biosynthetic genes

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regulatory genes

resistance genes

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electron transport genes

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KnownClusterBlast

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No matches found.

c00034_NZ_JAQE.. - Region 1 - Rnf_complex

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Location: 9,665 - 34,964 nt. (total: 25,300 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

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core biosynthetic genes

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resistance genes

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c00045_NZ_JAQE.. - Region 1 - Others_HGD_unassigned

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Location: 1 - 19,986 nt. (total: 19,986 nt) Show pHMM detection rules used

Region on contig edge.

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00067_NZ_JAQE.. - Region 1 - Pyruvate2acetate-formate

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Location: 1,714 - 24,704 nt. (total: 22,991 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

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KnownClusterBlast

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c00067_NZ_JAQE.. - Region 2 - PFOR_II_pathway

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Location: 29,011 - 52,685 nt. (total: 23,675 nt) Show pHMM detection rules used

PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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KnownClusterBlast

Similar known gene clusters