GCF_000820765.1_Arquibacterium_massiliensis_AP7_genomic - 6 region(s)

Identified primary metabolite regions

NZ_CCYH01000013 (original name was: NZ_CCYH01000013.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 13.1	Rnf_complex	E-MGC	4,972	19,954	Rnf complex C. sporogenes	RNF	83%

NZ_CCYH01000017 (original name was: NZ_CCYH01000017.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 17.1	Arginine2putrescine,Putrescine2spermidine	Aliphatic_amine	32,620	47,099	Arginine2putrescine R. gnavus	PUTR	60%

NZ_CCYH01000018 (original name was: NZ_CCYH01000018.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 18.1	TPP_AA_metabolism	Putative	1	19,717
Region 18.2	Putrescine2spermidine	Aliphatic_amine	46,190	68,545	Arginine2putrescine R. gnavus	PUTR	40%

NZ_CCYH01000036 (original name was: NZ_CCYH01000036.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 36.1	Others_HGD_unassigned	Putative	146,527	170,930

NZ_CCYH01000038 (original name was: NZ_CCYH01000038.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 38.1	OD_aldehydes_related	Putative	113,229	144,709	porA C. sporogenes	POR	60%

No primary metabolite regions were found in these records:: NZ_CCYH01000001 (original name was: NZ_CCYH01000001.1); NZ_CCYH01000002 (original name was: NZ_CCYH01000002.1); NZ_CCYH01000003 (original name was: NZ_CCYH01000003.1); NZ_CCYH01000004 (original name was: NZ_CCYH01000004.1); NZ_CCYH01000005 (original name was: NZ_CCYH01000005.1); NZ_CCYH01000006 (original name was: NZ_CCYH01000006.1); NZ_CCYH01000007 (original name was: NZ_CCYH01000007.1); NZ_CCYH01000008 (original name was: NZ_CCYH01000008.1); NZ_CCYH01000009 (original name was: NZ_CCYH01000009.1); NZ_CCYH01000010 (original name was: NZ_CCYH01000010.1); NZ_CCYH01000011 (original name was: NZ_CCYH01000011.1); NZ_CCYH01000012 (original name was: NZ_CCYH01000012.1); NZ_CCYH01000014 (original name was: NZ_CCYH01000014.1); NZ_CCYH01000015 (original name was: NZ_CCYH01000015.1); NZ_CCYH01000016 (original name was: NZ_CCYH01000016.1); NZ_CCYH01000019 (original name was: NZ_CCYH01000019.1); NZ_CCYH01000020 (original name was: NZ_CCYH01000020.1); NZ_CCYH01000021 (original name was: NZ_CCYH01000021.1); NZ_CCYH01000022 (original name was: NZ_CCYH01000022.1); NZ_CCYH01000023 (original name was: NZ_CCYH01000023.1); NZ_CCYH01000024 (original name was: NZ_CCYH01000024.1); NZ_CCYH01000025 (original name was: NZ_CCYH01000025.1); NZ_CCYH01000026 (original name was: NZ_CCYH01000026.1); NZ_CCYH01000027 (original name was: NZ_CCYH01000027.1); NZ_CCYH01000028 (original name was: NZ_CCYH01000028.1); NZ_CCYH01000029 (original name was: NZ_CCYH01000029.1); NZ_CCYH01000030 (original name was: NZ_CCYH01000030.1); NZ_CCYH01000031 (original name was: NZ_CCYH01000031.1); NZ_CCYH01000032 (original name was: NZ_CCYH01000032.1); NZ_CCYH01000033 (original name was: NZ_CCYH01000033.1); NZ_CCYH01000034 (original name was: NZ_CCYH01000034.1); NZ_CCYH01000035 (original name was: NZ_CCYH01000035.1); NZ_CCYH01000037 (original name was: NZ_CCYH01000037.1); NZ_CCYH01000039 (original name was: NZ_CCYH01000039.1); NZ_CCYH01000040 (original name was: NZ_CCYH01000040.1); NZ_CCYH01000041 (original name was: NZ_CCYH01000041.1); NZ_CCYH01000042 (original name was: NZ_CCYH01000042.1); NZ_CCYH01000043 (original name was: NZ_CCYH01000043.1); NZ_CCYH01000044 (original name was: NZ_CCYH01000044.1); NZ_CCYH01000045 (original name was: NZ_CCYH01000045.1); NZ_CCYH01000046 (original name was: NZ_CCYH01000046.1); NZ_CCYH01000047 (original name was: NZ_CCYH01000047.1); NZ_CCYH01000048 (original name was: NZ_CCYH01000048.1); NZ_CCYH01000049 (original name was: NZ_CCYH01000049.1); NZ_CCYH01000050 (original name was: NZ_CCYH01000050.1); NZ_CCYH01000051 (original name was: NZ_CCYH01000051.1)

Compact view

c00013_NZ_CCYH.. - Region 1 - Rnf_complex

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Location: 4,972 - 19,954 nt. (total: 14,983 nt) Show pHMM detection rules used

Region on contig edge.

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

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c00017_NZ_CCYH.. - Region 1 - Arginine2putrescine,Putrescine2spermidine

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Location: 32,620 - 47,099 nt. (total: 14,480 nt) Show pHMM detection rules used

Region on contig edge.

Arginine2putrescine: (minimum(3, [AdoMet_dc, Amidinotransf, Arginase, OKR_DC_1, OKR_DC_1_7_arginine, OTCace]) or ((OKR_DC_1_5_ornithine or OKR_DC_1 or Orn_Arg_deC_N) and minimum(1, [Arginase, OTCace, OTCace_N, PAD_porph])))
Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00018_NZ_CCYH.. - Region 1 - TPP_AA_metabolism

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Location: 1 - 19,717 nt. (total: 19,717 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00018_NZ_CCYH.. - Region 2 - Putrescine2spermidine

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Location: 46,190 - 68,545 nt. (total: 22,356 nt) Show pHMM detection rules used

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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c00036_NZ_CCYH.. - Region 1 - Others_HGD_unassigned

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Location: 146,527 - 170,930 nt. (total: 24,404 nt) Show pHMM detection rules used

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

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c00038_NZ_CCYH.. - Region 1 - OD_aldehydes_related

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Location: 113,229 - 144,709 nt. (total: 31,481 nt) Show pHMM detection rules used

OD_aldehydes_related: (minimum(1, [PFOR_II, POR, POR_N]) and minimum(1, [AFOR_C, AFOR_N, Aldedh]) and not (Gly_radical_scatole or Gly_radical or Gly_430_pcre or Gly_8-9_TMA))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters