GCF_000705495.1_GbsDonk1.0_genomic - 5 region(s)

Identified primary metabolite regions

NZ_JALS01000009 (original name was: NZ_JALS01000009.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 9.1	Putrescine2spermidine	Aliphatic_amine	35,950	56,843

NZ_JALS01000013 (original name was: NZ_JALS01000013.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 13.1	TPP_AA_metabolism	Putative	53,094	72,991

NZ_JALS01000014 (original name was: NZ_JALS01000014.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 14.1	Fumarate2succinate	SCFA	1	13,188

NZ_JALS01000020 (original name was: NZ_JALS01000020.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 20.1	Nitrate_reductase	E-MGC	1	8,126	Nitrate reductase E. coli	NIR	60%

NZ_JALS01000084 (original name was: NZ_JALS01000084.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 84.1	Pyruvate2acetate-formate,Nitrate_reductase	E-MGC	1	34,212	Nitrate reductase E. coli	NIR	80%

Region	Type	Class	From	To	Most similar known cluster	Similarity
Region 9.1	Putrescine2spermidine	Aliphatic_amine	35,950	56,843
Region 13.1	TPP_AA_metabolism	Putative	53,094	72,991
Region 14.1	Fumarate2succinate	SCFA	1	13,188
Region 20.1	Nitrate_reductase	E-MGC	1	8,126	Nitrate reductase E. coli	NIR	60%
Region 84.1	Pyruvate2acetate-formate,Nitrate_reductase	E-MGC	1	34,212	Nitrate reductase E. coli	NIR	80%

No primary metabolite regions were found in these records:: NZ_JALS01000001 (original name was: NZ_JALS01000001.1); NZ_JALS01000002 (original name was: NZ_JALS01000002.1); NZ_JALS01000003 (original name was: NZ_JALS01000003.1); NZ_JALS01000004 (original name was: NZ_JALS01000004.1); NZ_JALS01000005 (original name was: NZ_JALS01000005.1); NZ_JALS01000006 (original name was: NZ_JALS01000006.1); NZ_JALS01000007 (original name was: NZ_JALS01000007.1); NZ_JALS01000008 (original name was: NZ_JALS01000008.1); NZ_JALS01000010 (original name was: NZ_JALS01000010.1); NZ_JALS01000011 (original name was: NZ_JALS01000011.1); NZ_JALS01000012 (original name was: NZ_JALS01000012.1); NZ_JALS01000015 (original name was: NZ_JALS01000015.1); NZ_JALS01000016 (original name was: NZ_JALS01000016.1); NZ_JALS01000017 (original name was: NZ_JALS01000017.1); NZ_JALS01000018 (original name was: NZ_JALS01000018.1); NZ_JALS01000019 (original name was: NZ_JALS01000019.1); NZ_JALS01000021 (original name was: NZ_JALS01000021.1); NZ_JALS01000022 (original name was: NZ_JALS01000022.1); NZ_JALS01000023 (original name was: NZ_JALS01000023.1); NZ_JALS01000024 (original name was: NZ_JALS01000024.1); NZ_JALS01000025 (original name was: NZ_JALS01000025.1); NZ_JALS01000026 (original name was: NZ_JALS01000026.1); NZ_JALS01000027 (original name was: NZ_JALS01000027.1); NZ_JALS01000028 (original name was: NZ_JALS01000028.1); NZ_JALS01000029 (original name was: NZ_JALS01000029.1); NZ_JALS01000030 (original name was: NZ_JALS01000030.1); NZ_JALS01000031 (original name was: NZ_JALS01000031.1); NZ_JALS01000032 (original name was: NZ_JALS01000032.1); NZ_JALS01000033 (original name was: NZ_JALS01000033.1); NZ_JALS01000034 (original name was: NZ_JALS01000034.1); NZ_JALS01000035 (original name was: NZ_JALS01000035.1); NZ_JALS01000036 (original name was: NZ_JALS01000036.1); NZ_JALS01000037 (original name was: NZ_JALS01000037.1); NZ_JALS01000038 (original name was: NZ_JALS01000038.1); NZ_JALS01000039 (original name was: NZ_JALS01000039.1); NZ_JALS01000040 (original name was: NZ_JALS01000040.1); NZ_JALS01000041 (original name was: NZ_JALS01000041.1); NZ_JALS01000042 (original name was: NZ_JALS01000042.1); NZ_JALS01000043 (original name was: NZ_JALS01000043.1); NZ_JALS01000044 (original name was: NZ_JALS01000044.1); NZ_JALS01000045 (original name was: NZ_JALS01000045.1); NZ_JALS01000046 (original name was: NZ_JALS01000046.1); NZ_JALS01000047 (original name was: NZ_JALS01000047.1); NZ_JALS01000048 (original name was: NZ_JALS01000048.1); NZ_JALS01000049 (original name was: NZ_JALS01000049.1); NZ_JALS01000050 (original name was: NZ_JALS01000050.1); NZ_JALS01000051 (original name was: NZ_JALS01000051.1); NZ_JALS01000052 (original name was: NZ_JALS01000052.1); NZ_JALS01000053 (original name was: NZ_JALS01000053.1); NZ_JALS01000054 (original name was: NZ_JALS01000054.1); NZ_JALS01000055 (original name was: NZ_JALS01000055.1); NZ_JALS01000056 (original name was: NZ_JALS01000056.1); NZ_JALS01000057 (original name was: NZ_JALS01000057.1); NZ_JALS01000058 (original name was: NZ_JALS01000058.1); NZ_JALS01000059 (original name was: NZ_JALS01000059.1); NZ_JALS01000060 (original name was: NZ_JALS01000060.1); NZ_JALS01000061 (original name was: NZ_JALS01000061.1); NZ_JALS01000062 (original name was: NZ_JALS01000062.1); NZ_JALS01000063 (original name was: NZ_JALS01000063.1); NZ_JALS01000064 (original name was: NZ_JALS01000064.1); NZ_JALS01000065 (original name was: NZ_JALS01000065.1); NZ_JALS01000066 (original name was: NZ_JALS01000066.1); NZ_JALS01000067 (original name was: NZ_JALS01000067.1); NZ_JALS01000068 (original name was: NZ_JALS01000068.1); NZ_JALS01000069 (original name was: NZ_JALS01000069.1); NZ_JALS01000070 (original name was: NZ_JALS01000070.1); NZ_JALS01000071 (original name was: NZ_JALS01000071.1); NZ_JALS01000072 (original name was: NZ_JALS01000072.1); NZ_JALS01000073 (original name was: NZ_JALS01000073.1); NZ_JALS01000074 (original name was: NZ_JALS01000074.1); NZ_JALS01000075 (original name was: NZ_JALS01000075.1); NZ_JALS01000076 (original name was: NZ_JALS01000076.1); NZ_JALS01000077 (original name was: NZ_JALS01000077.1); NZ_JALS01000078 (original name was: NZ_JALS01000078.1); NZ_JALS01000079 (original name was: NZ_JALS01000079.1); NZ_JALS01000080 (original name was: NZ_JALS01000080.1); NZ_JALS01000081 (original name was: NZ_JALS01000081.1); NZ_JALS01000082 (original name was: NZ_JALS01000082.1); NZ_JALS01000083 (original name was: NZ_JALS01000083.1); NZ_JALS01000085 (original name was: NZ_JALS01000085.1); NZ_JALS01000086 (original name was: NZ_JALS01000086.1); NZ_JALS01000087 (original name was: NZ_JALS01000087.1); NZ_JALS01000088 (original name was: NZ_JALS01000088.1); NZ_JALS01000089 (original name was: NZ_JALS01000089.1); NZ_JALS01000090 (original name was: NZ_JALS01000090.1); NZ_JALS01000091 (original name was: NZ_JALS01000091.1); NZ_JALS01000092 (original name was: NZ_JALS01000092.1); NZ_JALS01000093 (original name was: NZ_JALS01000093.1); NZ_JALS01000094 (original name was: NZ_JALS01000094.1); NZ_JALS01000095 (original name was: NZ_JALS01000095.1); NZ_JALS01000096 (original name was: NZ_JALS01000096.1); NZ_JALS01000097 (original name was: NZ_JALS01000097.1); NZ_JALS01000098 (original name was: NZ_JALS01000098.1); NZ_JALS01000099 (original name was: NZ_JALS01000099.1); NZ_JALS01000100 (original name was: NZ_JALS01000100.1); NZ_JALS01000101 (original name was: NZ_JALS01000101.1); NZ_JALS01000102 (original name was: NZ_JALS01000102.1); NZ_JALS01000103 (original name was: NZ_JALS01000103.1); NZ_JALS01000104 (original name was: NZ_JALS01000104.1); NZ_JALS01000105 (original name was: NZ_JALS01000105.1); NZ_JALS01000106 (original name was: NZ_JALS01000106.1); NZ_JALS01000107 (original name was: NZ_JALS01000107.1); NZ_JALS01000108 (original name was: NZ_JALS01000108.1); NZ_JALS01000109 (original name was: NZ_JALS01000109.1); NZ_JALS01000110 (original name was: NZ_JALS01000110.1); NZ_JALS01000111 (original name was: NZ_JALS01000111.1); NZ_JALS01000112 (original name was: NZ_JALS01000112.1); NZ_JALS01000113 (original name was: NZ_JALS01000113.1); NZ_JALS01000114 (original name was: NZ_JALS01000114.1); NZ_JALS01000115 (original name was: NZ_JALS01000115.1); NZ_JALS01000116 (original name was: NZ_JALS01000116.1); NZ_JALS01000117 (original name was: NZ_JALS01000117.1); NZ_JALS01000118 (original name was: NZ_JALS01000118.1); NZ_JALS01000119 (original name was: NZ_JALS01000119.1); NZ_JALS01000120 (original name was: NZ_JALS01000120.1); NZ_JALS01000121 (original name was: NZ_JALS01000121.1); NZ_JALS01000122 (original name was: NZ_JALS01000122.1); NZ_JALS01000123 (original name was: NZ_JALS01000123.1); NZ_JALS01000124 (original name was: NZ_JALS01000124.1); NZ_JALS01000125 (original name was: NZ_JALS01000125.1); NZ_JALS01000128 (original name was: NZ_JALS01000128.1); NZ_JALS01000129 (original name was: NZ_JALS01000129.1)

Compact view

c00009_NZ_JALS.. - Region 1 - Putrescine2spermidine

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Location: 35,950 - 56,843 nt. (total: 20,894 nt) Show pHMM detection rules used

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00013_NZ_JALS.. - Region 1 - TPP_AA_metabolism

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Location: 53,094 - 72,991 nt. (total: 19,898 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00014_NZ_JALS.. - Region 1 - Fumarate2succinate

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Location: 1 - 13,188 nt. (total: 13,188 nt) Show pHMM detection rules used

Region on contig edge.

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00020_NZ_JALS.. - Region 1 - Nitrate_reductase

Download region GenBank file

Location: 1 - 8,126 nt. (total: 8,126 nt) Show pHMM detection rules used

Region on contig edge.

Nitrate_reductase: (Nitr_red_bet_C and Nitrate_red_del and Nitrate_red_gam and Molybdopterin and minimum(2, [Fer4_11, Molybdopterin, Molydop_binding, Nitr_red_alph_N]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

c00084_NZ_JALS.. - Region 1 - Nitrate_reductase,Pyruvate2acetate-formate

Download region GenBank file

Location: 1 - 34,212 nt. (total: 34,212 nt) Show pHMM detection rules used

Region on contig edge.

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)
Nitrate_reductase: (Nitr_red_bet_C and Nitrate_red_del and Nitrate_red_gam and Molybdopterin and minimum(2, [Fer4_11, Molybdopterin, Molydop_binding, Nitr_red_alph_N]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters