GCF_022647425.1_ASM2264742v1_genomic - 14 region(s)

Identified primary metabolite regions

c00002_NZ_JALC.. (original name was: NZ_JALCKS010000002.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 2.1	succinate2propionate	SCFA	200,269	226,044	Succinate to propionate V. parvulla	PRO	66%

c00003_NZ_JALC.. (original name was: NZ_JALCKS010000003.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 3.1	EUT_pathway	SCFA-other	46,788	98,515	Ethanolamine degradation S. typhimurium	EUT	42%

c00004_NZ_JALC.. (original name was: NZ_JALCKS010000004.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 4.1	OD_AA_metabolism,porA	SCFA	107,206	144,560

c00007_NZ_JALC.. (original name was: NZ_JALCKS010000007.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 7.1	Putrescine2spermidine	Aliphatic_amine	1	13,228	Arginine degradation C. sticklandii	ARG	22%

c00009_NZ_JALC.. (original name was: NZ_JALCKS010000009.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 9.1	fatty_acids-unassigned	Putative	82,646	108,083	Acetate to butyrate C. sporogenes	BUT	33%

c00010_NZ_JALC.. (original name was: NZ_JALCKS010000010.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 10.1	Glycine_cleavage	Other	2,994	27,359	Glycine cleavage C. sticklandii	GLY	80%

c00011_NZ_JALC.. (original name was: NZ_JALCKS010000011.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 11.1	TPP_AA_metabolism	Putative	74,079	103,138

c00020_NZ_JALC.. (original name was: NZ_JALCKS010000020.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 20.1	NADH_dehydrogenase_I	E-MGC	3,653	33,952	NADH dehydrogenase I Bacteroides sp.	NADHD	38%

c00023_NZ_JALC.. (original name was: NZ_JALCKS010000023.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 23.1	TPP_AA_metabolism	Putative	1	24,870

c00029_NZ_JALC.. (original name was: NZ_JALCKS010000029.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 29.1	TPP_AA_metabolism	Putative	10,687	33,992

c00043_NZ_JALC.. (original name was: NZ_JALCKS010000043.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 43.1	acetate2butyrate	SCFA	1	15,086	Acetate to butyrate C. sporogenes	BUT	50%

c00069_NZ_JALC.. (original name was: NZ_JALCKS010000069.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 69.1	Putrescine2spermidine	Aliphatic_amine	1	14,707	Arginine degradation C. sticklandii	ARG	22%

c00072_NZ_JALC.. (original name was: NZ_JALCKS010000072.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 72.1	acetate2butyrate	SCFA	674	18,240	Acetate to butyrate C. sporogenes	BUT	50%

c00076_NZ_JALC.. (original name was: NZ_JALCKS010000076.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 76.1	Fumarate2succinate	SCFA	1	16,809

No primary metabolite regions were found in these records:: c00001_NZ_JALC.. (original name was: NZ_JALCKS010000001.1); c00005_NZ_JALC.. (original name was: NZ_JALCKS010000005.1); c00006_NZ_JALC.. (original name was: NZ_JALCKS010000006.1); c00008_NZ_JALC.. (original name was: NZ_JALCKS010000008.1); c00012_NZ_JALC.. (original name was: NZ_JALCKS010000012.1); c00013_NZ_JALC.. (original name was: NZ_JALCKS010000013.1); c00014_NZ_JALC.. (original name was: NZ_JALCKS010000014.1); c00015_NZ_JALC.. (original name was: NZ_JALCKS010000015.1); c00016_NZ_JALC.. (original name was: NZ_JALCKS010000016.1); c00017_NZ_JALC.. (original name was: NZ_JALCKS010000017.1); c00018_NZ_JALC.. (original name was: NZ_JALCKS010000018.1); c00019_NZ_JALC.. (original name was: NZ_JALCKS010000019.1); c00021_NZ_JALC.. (original name was: NZ_JALCKS010000021.1); c00022_NZ_JALC.. (original name was: NZ_JALCKS010000022.1); c00024_NZ_JALC.. (original name was: NZ_JALCKS010000024.1); c00025_NZ_JALC.. (original name was: NZ_JALCKS010000025.1); c00026_NZ_JALC.. (original name was: NZ_JALCKS010000026.1); c00027_NZ_JALC.. (original name was: NZ_JALCKS010000027.1); c00028_NZ_JALC.. (original name was: NZ_JALCKS010000028.1); c00030_NZ_JALC.. (original name was: NZ_JALCKS010000030.1); c00031_NZ_JALC.. (original name was: NZ_JALCKS010000031.1); c00032_NZ_JALC.. (original name was: NZ_JALCKS010000032.1); c00033_NZ_JALC.. (original name was: NZ_JALCKS010000033.1); c00034_NZ_JALC.. (original name was: NZ_JALCKS010000034.1); c00035_NZ_JALC.. (original name was: NZ_JALCKS010000035.1); c00036_NZ_JALC.. (original name was: NZ_JALCKS010000036.1); c00037_NZ_JALC.. (original name was: NZ_JALCKS010000037.1); c00038_NZ_JALC.. (original name was: NZ_JALCKS010000038.1); c00039_NZ_JALC.. (original name was: NZ_JALCKS010000039.1); c00040_NZ_JALC.. (original name was: NZ_JALCKS010000040.1); c00041_NZ_JALC.. (original name was: NZ_JALCKS010000041.1); c00042_NZ_JALC.. (original name was: NZ_JALCKS010000042.1); c00044_NZ_JALC.. (original name was: NZ_JALCKS010000044.1); c00045_NZ_JALC.. (original name was: NZ_JALCKS010000045.1); c00046_NZ_JALC.. (original name was: NZ_JALCKS010000046.1); c00047_NZ_JALC.. (original name was: NZ_JALCKS010000047.1); c00048_NZ_JALC.. (original name was: NZ_JALCKS010000048.1); c00049_NZ_JALC.. (original name was: NZ_JALCKS010000049.1); c00050_NZ_JALC.. (original name was: NZ_JALCKS010000050.1); c00051_NZ_JALC.. (original name was: NZ_JALCKS010000051.1); c00052_NZ_JALC.. (original name was: NZ_JALCKS010000052.1); c00053_NZ_JALC.. (original name was: NZ_JALCKS010000053.1); c00054_NZ_JALC.. (original name was: NZ_JALCKS010000054.1); c00055_NZ_JALC.. (original name was: NZ_JALCKS010000055.1); c00056_NZ_JALC.. (original name was: NZ_JALCKS010000056.1); c00057_NZ_JALC.. (original name was: NZ_JALCKS010000057.1); c00058_NZ_JALC.. (original name was: NZ_JALCKS010000058.1); c00059_NZ_JALC.. (original name was: NZ_JALCKS010000059.1); c00060_NZ_JALC.. (original name was: NZ_JALCKS010000060.1); c00061_NZ_JALC.. (original name was: NZ_JALCKS010000061.1); c00062_NZ_JALC.. (original name was: NZ_JALCKS010000062.1); c00063_NZ_JALC.. (original name was: NZ_JALCKS010000063.1); c00064_NZ_JALC.. (original name was: NZ_JALCKS010000064.1); c00065_NZ_JALC.. (original name was: NZ_JALCKS010000065.1); c00066_NZ_JALC.. (original name was: NZ_JALCKS010000066.1); c00067_NZ_JALC.. (original name was: NZ_JALCKS010000067.1); c00068_NZ_JALC.. (original name was: NZ_JALCKS010000068.1); c00070_NZ_JALC.. (original name was: NZ_JALCKS010000070.1); c00071_NZ_JALC.. (original name was: NZ_JALCKS010000071.1); c00073_NZ_JALC.. (original name was: NZ_JALCKS010000073.1); c00074_NZ_JALC.. (original name was: NZ_JALCKS010000074.1); c00075_NZ_JALC.. (original name was: NZ_JALCKS010000075.1); c00077_NZ_JALC.. (original name was: NZ_JALCKS010000077.1); c00078_NZ_JALC.. (original name was: NZ_JALCKS010000078.1); c00079_NZ_JALC.. (original name was: NZ_JALCKS010000079.1); c00080_NZ_JALC.. (original name was: NZ_JALCKS010000080.1); c00081_NZ_JALC.. (original name was: NZ_JALCKS010000081.1); c00082_NZ_JALC.. (original name was: NZ_JALCKS010000082.1); c00083_NZ_JALC.. (original name was: NZ_JALCKS010000083.1); c00084_NZ_JALC.. (original name was: NZ_JALCKS010000084.1); c00085_NZ_JALC.. (original name was: NZ_JALCKS010000085.1); c00086_NZ_JALC.. (original name was: NZ_JALCKS010000086.1); c00087_NZ_JALC.. (original name was: NZ_JALCKS010000087.1); c00088_NZ_JALC.. (original name was: NZ_JALCKS010000088.1); c00089_NZ_JALC.. (original name was: NZ_JALCKS010000089.1); c00090_NZ_JALC.. (original name was: NZ_JALCKS010000090.1); c00091_NZ_JALC.. (original name was: NZ_JALCKS010000091.1); c00092_NZ_JALC.. (original name was: NZ_JALCKS010000092.1); c00093_NZ_JALC.. (original name was: NZ_JALCKS010000093.1); c00094_NZ_JALC.. (original name was: NZ_JALCKS010000094.1)

Compact view

c00002_NZ_JALC.. - Region 1 - succinate2propionate

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Location: 200,269 - 226,044 nt. (total: 25,776 nt) Show pHMM detection rules used

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

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c00003_NZ_JALC.. - Region 1 - EUT_pathway

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Location: 46,788 - 98,515 nt. (total: 51,728 nt) Show pHMM detection rules used

EUT_pathway: (minimum(3, [Aldedh, BMC, Cob_adeno_trans, EutA, EutH, EutK_C, EutN_CcmL, EutQ, Fe-ADH, Fe-ADH_2, Malic_M, MreB_Mbl, PTA_PTB, PduV-EutP, malic]) and EutB and EutC)

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c00004_NZ_JALC.. - Region 1 - OD_AA_metabolism,porA

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Location: 107,206 - 144,560 nt. (total: 37,355 nt) Show pHMM detection rules used

OD_AA_metabolism: (minimum(1, [PFOR_II, POR, POR_N]) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (Gly_radical_scatole or Gly_radical or Gly_430_pcre or Gly_8-9_TMA))
porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

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c00007_NZ_JALC.. - Region 1 - Putrescine2spermidine

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Location: 1 - 13,228 nt. (total: 13,228 nt) Show pHMM detection rules used

Region on contig edge.

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

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c00009_NZ_JALC.. - Region 1 - fatty_acids-unassigned

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Location: 82,646 - 108,083 nt. (total: 25,438 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

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c00010_NZ_JALC.. - Region 1 - Glycine_cleavage

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Location: 2,994 - 27,359 nt. (total: 24,366 nt) Show pHMM detection rules used

Glycine_cleavage: (minimum(2, [Aminotran_5, GCV_H, GCV_T, GDC-P, SoxG]) and GCV_H and GCV_T_C)

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c00011_NZ_JALC.. - Region 1 - TPP_AA_metabolism

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Location: 74,079 - 103,138 nt. (total: 29,060 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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c00020_NZ_JALC.. - Region 1 - NADH_dehydrogenase_I

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Location: 3,653 - 33,952 nt. (total: 30,300 nt) Show pHMM detection rules used

NADH_dehydrogenase_I: (Oxidored_q4 and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and NADHdh and Oxidored_q3 and Oxidored_q2 and minimum(4, [Fe-2S_thioredx, Fer2_4, Fer4_7, Molybdop_Fe4S4, Molydop_binding, NADH-G_4Fe-4S_3, NADH_4Fe-4S, Proton_antipo_M, Proton_antipo_N, SLBB]))

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c00023_NZ_JALC.. - Region 1 - TPP_AA_metabolism

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Location: 1 - 24,870 nt. (total: 24,870 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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c00029_NZ_JALC.. - Region 1 - TPP_AA_metabolism

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Location: 10,687 - 33,992 nt. (total: 23,306 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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c00043_NZ_JALC.. - Region 1 - acetate2butyrate

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Location: 1 - 15,086 nt. (total: 15,086 nt) Show pHMM detection rules used

Region on contig edge.

acetate2butyrate: (not (POR or POR_N or PFOR_II) and minimum(4, [Acyl-CoA_dh_1, Acyl-CoA_dh_2, ECH_2, ETF, ETF_alpha, HCDH_N, Thiolase_N, ketoacyl-synt]) and HCDH and minimum(1, [EC1_2-faecali, ECH1_Enoyl_CoA_DH1, ECH1_Enoyl_CoA_DH2, ECH1_Enoyl_CoA_DH3, ECH1_Enoyl_CoA_DH4, Thiolase_C]))

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c00069_NZ_JALC.. - Region 1 - Putrescine2spermidine

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Location: 1 - 14,707 nt. (total: 14,707 nt) Show pHMM detection rules used

Region on contig edge.

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

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c00072_NZ_JALC.. - Region 1 - acetate2butyrate

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Location: 674 - 18,240 nt. (total: 17,567 nt) Show pHMM detection rules used

Region on contig edge.

acetate2butyrate: (not (POR or POR_N or PFOR_II) and minimum(4, [Acyl-CoA_dh_1, Acyl-CoA_dh_2, ECH_2, ETF, ETF_alpha, HCDH_N, Thiolase_N, ketoacyl-synt]) and HCDH and minimum(1, [EC1_2-faecali, ECH1_Enoyl_CoA_DH1, ECH1_Enoyl_CoA_DH2, ECH1_Enoyl_CoA_DH3, ECH1_Enoyl_CoA_DH4, Thiolase_C]))

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c00076_NZ_JALC.. - Region 1 - Fumarate2succinate

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Location: 1 - 16,809 nt. (total: 16,809 nt) Show pHMM detection rules used

Region on contig edge.

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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