GCF_003269955.1_ASM326995v1_genomic - 8 region(s)

Identified primary metabolite regions

NZ_LWAG01000007 (original name was: NZ_LWAG01000007.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 17.1	Glycine_cleavage	Other	1	30,788	Glycine cleavage C. sticklandii	GLY	80%

NZ_LWAG01000021 (original name was: NZ_LWAG01000021.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 31.1	TPP_AA_metabolism	Putative	75,510	98,821
Region 31.2	Fumarate2succinate	SCFA	102,578	125,141	Acetate to butyrate C. sporogenes	BUT	33%

NZ_LWAG01000031 (original name was: NZ_LWAG01000031.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 40.1	EUT_pathway	SCFA-other	40,169	94,769	Ethanolamine degradation S. typhimurium	EUT	21%

NZ_LWAG01000035 (original name was: NZ_LWAG01000035.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 44.1	Putrescine2spermidine,acetate2butyrate	SCFA	10,624	46,069	Acetate to butyrate C. sporogenes	BUT	50%

NZ_LWAG01000045 (original name was: NZ_LWAG01000045.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 53.1	TPP_fatty_acids	Putative	2,322	29,807

NZ_LWAG01000047 (original name was: NZ_LWAG01000047.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 55.1	TPP_fatty_acids	Putative	55,056	85,807	Carnitine caiTABCDE E. coli	CAR	33%

NZ_LWAG01000069 (original name was: NZ_LWAG01000069.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 72.1	OD_eut_pdu_related,OD_aldehydes_related	Putative	1,188	33,668

No primary metabolite regions were found in these records:: NZ_LWAG01000056 (original name was: NZ_LWAG01000056.1); NZ_LWAG01000065 (original name was: NZ_LWAG01000065.1); NZ_LWAG01000051 (original name was: NZ_LWAG01000051.1); NZ_LWAG01000098 (original name was: NZ_LWAG01000098.1); NZ_LWAG01000063 (original name was: NZ_LWAG01000063.1); NZ_LWAG01000039 (original name was: NZ_LWAG01000039.1); NZ_LWAG01000071 (original name was: NZ_LWAG01000071.1); NZ_LWAG01000090 (original name was: NZ_LWAG01000090.1); NZ_LWAG01000023 (original name was: NZ_LWAG01000023.1); NZ_LWAG01000068 (original name was: NZ_LWAG01000068.1); NZ_LWAG01000001 (original name was: NZ_LWAG01000001.1); NZ_LWAG01000002 (original name was: NZ_LWAG01000002.1); NZ_LWAG01000003 (original name was: NZ_LWAG01000003.1); NZ_LWAG01000004 (original name was: NZ_LWAG01000004.1); NZ_LWAG01000005 (original name was: NZ_LWAG01000005.1); NZ_LWAG01000006 (original name was: NZ_LWAG01000006.1); NZ_LWAG01000008 (original name was: NZ_LWAG01000008.1); NZ_LWAG01000009 (original name was: NZ_LWAG01000009.1); NZ_LWAG01000010 (original name was: NZ_LWAG01000010.1); NZ_LWAG01000011 (original name was: NZ_LWAG01000011.1); NZ_LWAG01000012 (original name was: NZ_LWAG01000012.1); NZ_LWAG01000013 (original name was: NZ_LWAG01000013.1); NZ_LWAG01000014 (original name was: NZ_LWAG01000014.1); NZ_LWAG01000015 (original name was: NZ_LWAG01000015.1); NZ_LWAG01000016 (original name was: NZ_LWAG01000016.1); NZ_LWAG01000017 (original name was: NZ_LWAG01000017.1); NZ_LWAG01000018 (original name was: NZ_LWAG01000018.1); NZ_LWAG01000019 (original name was: NZ_LWAG01000019.1); NZ_LWAG01000020 (original name was: NZ_LWAG01000020.1); NZ_LWAG01000022 (original name was: NZ_LWAG01000022.1); NZ_LWAG01000024 (original name was: NZ_LWAG01000024.1); NZ_LWAG01000025 (original name was: NZ_LWAG01000025.1); NZ_LWAG01000026 (original name was: NZ_LWAG01000026.1); NZ_LWAG01000027 (original name was: NZ_LWAG01000027.1); NZ_LWAG01000028 (original name was: NZ_LWAG01000028.1); NZ_LWAG01000029 (original name was: NZ_LWAG01000029.1); NZ_LWAG01000030 (original name was: NZ_LWAG01000030.1); NZ_LWAG01000032 (original name was: NZ_LWAG01000032.1); NZ_LWAG01000033 (original name was: NZ_LWAG01000033.1); NZ_LWAG01000034 (original name was: NZ_LWAG01000034.1); NZ_LWAG01000036 (original name was: NZ_LWAG01000036.1); NZ_LWAG01000037 (original name was: NZ_LWAG01000037.1); NZ_LWAG01000038 (original name was: NZ_LWAG01000038.1); NZ_LWAG01000040 (original name was: NZ_LWAG01000040.1); NZ_LWAG01000041 (original name was: NZ_LWAG01000041.1); NZ_LWAG01000042 (original name was: NZ_LWAG01000042.1); NZ_LWAG01000043 (original name was: NZ_LWAG01000043.1); NZ_LWAG01000044 (original name was: NZ_LWAG01000044.1); NZ_LWAG01000046 (original name was: NZ_LWAG01000046.1); NZ_LWAG01000048 (original name was: NZ_LWAG01000048.1); NZ_LWAG01000049 (original name was: NZ_LWAG01000049.1); NZ_LWAG01000050 (original name was: NZ_LWAG01000050.1); NZ_LWAG01000052 (original name was: NZ_LWAG01000052.1); NZ_LWAG01000053 (original name was: NZ_LWAG01000053.1); NZ_LWAG01000054 (original name was: NZ_LWAG01000054.1); NZ_LWAG01000055 (original name was: NZ_LWAG01000055.1); NZ_LWAG01000057 (original name was: NZ_LWAG01000057.1); NZ_LWAG01000058 (original name was: NZ_LWAG01000058.1); NZ_LWAG01000059 (original name was: NZ_LWAG01000059.1); NZ_LWAG01000060 (original name was: NZ_LWAG01000060.1); NZ_LWAG01000061 (original name was: NZ_LWAG01000061.1); NZ_LWAG01000062 (original name was: NZ_LWAG01000062.1); NZ_LWAG01000064 (original name was: NZ_LWAG01000064.1); NZ_LWAG01000066 (original name was: NZ_LWAG01000066.1); NZ_LWAG01000067 (original name was: NZ_LWAG01000067.1); NZ_LWAG01000070 (original name was: NZ_LWAG01000070.1); NZ_LWAG01000072 (original name was: NZ_LWAG01000072.1); NZ_LWAG01000073 (original name was: NZ_LWAG01000073.1); NZ_LWAG01000074 (original name was: NZ_LWAG01000074.1); NZ_LWAG01000075 (original name was: NZ_LWAG01000075.1); NZ_LWAG01000076 (original name was: NZ_LWAG01000076.1); NZ_LWAG01000077 (original name was: NZ_LWAG01000077.1); NZ_LWAG01000078 (original name was: NZ_LWAG01000078.1); NZ_LWAG01000079 (original name was: NZ_LWAG01000079.1); NZ_LWAG01000080 (original name was: NZ_LWAG01000080.1); NZ_LWAG01000081 (original name was: NZ_LWAG01000081.1); NZ_LWAG01000082 (original name was: NZ_LWAG01000082.1); NZ_LWAG01000083 (original name was: NZ_LWAG01000083.1); NZ_LWAG01000084 (original name was: NZ_LWAG01000084.1); NZ_LWAG01000085 (original name was: NZ_LWAG01000085.1); NZ_LWAG01000086 (original name was: NZ_LWAG01000086.1); NZ_LWAG01000087 (original name was: NZ_LWAG01000087.1); NZ_LWAG01000088 (original name was: NZ_LWAG01000088.1); NZ_LWAG01000089 (original name was: NZ_LWAG01000089.1); NZ_LWAG01000091 (original name was: NZ_LWAG01000091.1); NZ_LWAG01000092 (original name was: NZ_LWAG01000092.1); NZ_LWAG01000093 (original name was: NZ_LWAG01000093.1); NZ_LWAG01000094 (original name was: NZ_LWAG01000094.1); NZ_LWAG01000095 (original name was: NZ_LWAG01000095.1); NZ_LWAG01000096 (original name was: NZ_LWAG01000096.1); NZ_LWAG01000097 (original name was: NZ_LWAG01000097.1); NZ_LWAG01000099 (original name was: NZ_LWAG01000099.1)

Compact view

c00017_NZ_LWAG.. - Region 1 - Glycine_cleavage

Download region GenBank file

Location: 1 - 30,788 nt. (total: 30,788 nt) Show pHMM detection rules used

Region on contig edge.

Glycine_cleavage: (minimum(2, [Aminotran_5, GCV_H, GCV_T, GDC-P, SoxG]) and GCV_H and GCV_T_C)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

c00031_NZ_LWAG.. - Region 1 - TPP_AA_metabolism

Download region GenBank file

Location: 75,510 - 98,821 nt. (total: 23,312 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.

c00031_NZ_LWAG.. - Region 2 - Fumarate2succinate

Download region GenBank file

Location: 102,578 - 125,141 nt. (total: 22,564 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

c00040_NZ_LWAG.. - Region 1 - EUT_pathway

Download region GenBank file

Location: 40,169 - 94,769 nt. (total: 54,601 nt) Show pHMM detection rules used

EUT_pathway: (minimum(3, [Aldedh, BMC, Cob_adeno_trans, EutA, EutH, EutK_C, EutN_CcmL, EutQ, Fe-ADH, Fe-ADH_2, Malic_M, MreB_Mbl, PTA_PTB, PduV-EutP, malic]) and EutB and EutC)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

c00044_NZ_LWAG.. - Region 1 - Putrescine2spermidine,acetate2butyrate

Download region GenBank file

Location: 10,624 - 46,069 nt. (total: 35,446 nt) Show pHMM detection rules used

Region on contig edge.

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))
acetate2butyrate: (not (POR or POR_N or PFOR_II) and minimum(4, [Acyl-CoA_dh_1, Acyl-CoA_dh_2, ECH_2, ETF, ETF_alpha, HCDH_N, Thiolase_N, ketoacyl-synt]) and HCDH and minimum(1, [EC1_2-faecali, ECH1_Enoyl_CoA_DH1, ECH1_Enoyl_CoA_DH2, ECH1_Enoyl_CoA_DH3, ECH1_Enoyl_CoA_DH4, Thiolase_C]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

c00053_NZ_LWAG.. - Region 1 - TPP_fatty_acids

Download region GenBank file

Location: 2,322 - 29,807 nt. (total: 27,486 nt) Show pHMM detection rules used

TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.

c00055_NZ_LWAG.. - Region 1 - TPP_fatty_acids

Download region GenBank file

Location: 55,056 - 85,807 nt. (total: 30,752 nt) Show pHMM detection rules used

TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

c00072_NZ_LWAG.. - Region 1 - OD_aldehydes_related,OD_eut_pdu_related

Download region GenBank file

Location: 1,188 - 33,668 nt. (total: 32,481 nt) Show pHMM detection rules used

OD_eut_pdu_related: (minimum(1, [PFOR_II, POR, POR_N]) and minimum(2, [Aldedh, EutN_CcmL, EutQ, Fe-ADH, Fe-ADH_2, PTAC, PduV-EutP]) and not (Gly_radical or Gly_430_pcre or Gly_8-9_TMA))
OD_aldehydes_related: (minimum(1, [PFOR_II, POR, POR_N]) and minimum(1, [AFOR_C, AFOR_N, Aldedh]) and not (Gly_radical_scatole or Gly_radical or Gly_430_pcre or Gly_8-9_TMA))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.