GCF_000378385.1_ASM37838v1_genomic - 6 region(s)

Identified primary metabolite regions

NZ_KB899659.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 1.1	Fumarate2succinate	SCFA	1,231,734	1,254,261

NZ_KB899662.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 4.1	TPP_AA_metabolism	Putative	178,413	201,769

NZ_KB899663.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 5.1	Pyruvate2acetate-formate	SCFA	305,339	328,411	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

NZ_KB899664.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 6.1	Putrescine2spermidine	Aliphatic_amine	396,428	417,255	Arginine degradation C. sticklandii	ARG	22%

NZ_KB899665.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 7.1	Fumarate2succinate	SCFA	214,005	236,040

NZ_KB899667.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 9.1	Fumarate2succinate	SCFA	288,272	310,033

Region	Type	Class	From	To	Most similar known cluster	Similarity
Region 1.1	Fumarate2succinate	SCFA	1,231,734	1,254,261
Region 4.1	TPP_AA_metabolism	Putative	178,413	201,769
Region 5.1	Pyruvate2acetate-formate	SCFA	305,339	328,411	Pyruvate to acetate-formate E. coli	PFL_acetate	100%
Region 6.1	Putrescine2spermidine	Aliphatic_amine	396,428	417,255	Arginine degradation C. sticklandii	ARG	22%
Region 7.1	Fumarate2succinate	SCFA	214,005	236,040
Region 9.1	Fumarate2succinate	SCFA	288,272	310,033

No primary metabolite regions were found in these records:: NZ_KB899660.1; NZ_KB899661.1; NZ_KB899666.1; NZ_KB899668.1; NZ_KB899669.1; NZ_KB899670.1; NZ_KB899671.1; NZ_KB899672.1; NZ_KB899673.1; NZ_KB899674.1; NZ_KB899675.1; NZ_KB899676.1; NZ_KB899677.1; NZ_KB899678.1; NZ_KB899679.1; NZ_KB899680.1; NZ_KB899681.1; NZ_KB899682.1; NZ_KB899683.1; NZ_KB899684.1; NZ_KB899685.1; NZ_KB899686.1; NZ_KB899687.1; NZ_KB899688.1; NZ_KB899689.1; NZ_KB899690.1; NZ_KB899691.1; NZ_KB899692.1; NZ_KB899693.1; NZ_KB899694.1

Compact view

NZ_KB899659.1 - Region 1 - Fumarate2succinate

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Location: 1,231,734 - 1,254,261 nt. (total: 22,528 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

NZ_KB899662.1 - Region 1 - TPP_AA_metabolism

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Location: 178,413 - 201,769 nt. (total: 23,357 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

NZ_KB899663.1 - Region 1 - Pyruvate2acetate-formate

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Location: 305,339 - 328,411 nt. (total: 23,073 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

NZ_KB899664.1 - Region 1 - Putrescine2spermidine

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Location: 396,428 - 417,255 nt. (total: 20,828 nt) Show pHMM detection rules used

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

NZ_KB899665.1 - Region 1 - Fumarate2succinate

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Location: 214,005 - 236,040 nt. (total: 22,036 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.

NZ_KB899667.1 - Region 1 - Fumarate2succinate

Download region GenBank file

Location: 288,272 - 310,033 nt. (total: 21,762 nt) Show pHMM detection rules used

Region on contig edge.

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.