GCF_000482845.1_ASM48284v1_genomic - 6 region(s)

Identified primary metabolite regions

NZ_KI519512.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 4.1	Arginine2putrescine	Aliphatic_amine	34,617	57,465	Arginine2putrescine E. coli	PUTR	50%

NZ_AXWV01000016 (original name was: NZ_AXWV01000016.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 10.1	TPP_AA_metabolism	Putative	32,287	57,241

NZ_AXWV01000028 (original name was: NZ_AXWV01000028.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 22.1	Pyruvate2acetate-formate	SCFA	11,659	35,404	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

NZ_AXWV01000040 (original name was: NZ_AXWV01000040.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 34.1	Fumarate2succinate	SCFA	1	15,305	Fumarate2succinate fum red E. coli	SUC	100%

NZ_AXWV01000046 (original name was: NZ_AXWV01000046.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 39.1	Respiratory_glycerol	E-MGC	12,716	34,171

NZ_AXWV01000099 (original name was: NZ_AXWV01000099.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 91.1	Rnf_complex	E-MGC	1	9,339	Rnf complex C. sporogenes	RNF	66%

No primary metabolite regions were found in these records:: NZ_AXWV01000001 (original name was: NZ_AXWV01000001.1); NZ_KI519511.1; NZ_AXWV01000006 (original name was: NZ_AXWV01000006.1); NZ_KI519513.1; NZ_AXWV01000012 (original name was: NZ_AXWV01000012.1); NZ_AXWV01000013 (original name was: NZ_AXWV01000013.1); NZ_AXWV01000014 (original name was: NZ_AXWV01000014.1); NZ_AXWV01000015 (original name was: NZ_AXWV01000015.1); NZ_AXWV01000017 (original name was: NZ_AXWV01000017.1); NZ_AXWV01000018 (original name was: NZ_AXWV01000018.1); NZ_AXWV01000019 (original name was: NZ_AXWV01000019.1); NZ_AXWV01000020 (original name was: NZ_AXWV01000020.1); NZ_AXWV01000021 (original name was: NZ_AXWV01000021.1); NZ_AXWV01000022 (original name was: NZ_AXWV01000022.1); NZ_AXWV01000023 (original name was: NZ_AXWV01000023.1); NZ_AXWV01000024 (original name was: NZ_AXWV01000024.1); NZ_AXWV01000025 (original name was: NZ_AXWV01000025.1); NZ_AXWV01000026 (original name was: NZ_AXWV01000026.1); NZ_AXWV01000027 (original name was: NZ_AXWV01000027.1); NZ_AXWV01000029 (original name was: NZ_AXWV01000029.1); NZ_AXWV01000030 (original name was: NZ_AXWV01000030.1); NZ_AXWV01000031 (original name was: NZ_AXWV01000031.1); NZ_AXWV01000032 (original name was: NZ_AXWV01000032.1); NZ_AXWV01000033 (original name was: NZ_AXWV01000033.1); NZ_AXWV01000034 (original name was: NZ_AXWV01000034.1); NZ_AXWV01000035 (original name was: NZ_AXWV01000035.1); NZ_AXWV01000036 (original name was: NZ_AXWV01000036.1); NZ_AXWV01000037 (original name was: NZ_AXWV01000037.1); NZ_AXWV01000038 (original name was: NZ_AXWV01000038.1); NZ_AXWV01000039 (original name was: NZ_AXWV01000039.1); NZ_AXWV01000041 (original name was: NZ_AXWV01000041.1); NZ_AXWV01000042 (original name was: NZ_AXWV01000042.1); NZ_AXWV01000043 (original name was: NZ_AXWV01000043.1); NZ_KI519514.1; NZ_AXWV01000047 (original name was: NZ_AXWV01000047.1); NZ_AXWV01000048 (original name was: NZ_AXWV01000048.1); NZ_AXWV01000049 (original name was: NZ_AXWV01000049.1); NZ_AXWV01000050 (original name was: NZ_AXWV01000050.1); NZ_KI519515.1; NZ_AXWV01000053 (original name was: NZ_AXWV01000053.1); NZ_AXWV01000054 (original name was: NZ_AXWV01000054.1); NZ_AXWV01000055 (original name was: NZ_AXWV01000055.1); NZ_AXWV01000056 (original name was: NZ_AXWV01000056.1); NZ_AXWV01000057 (original name was: NZ_AXWV01000057.1); NZ_AXWV01000058 (original name was: NZ_AXWV01000058.1); NZ_AXWV01000059 (original name was: NZ_AXWV01000059.1); NZ_AXWV01000060 (original name was: NZ_AXWV01000060.1); NZ_AXWV01000061 (original name was: NZ_AXWV01000061.1); NZ_AXWV01000062 (original name was: NZ_AXWV01000062.1); NZ_AXWV01000063 (original name was: NZ_AXWV01000063.1); NZ_AXWV01000064 (original name was: NZ_AXWV01000064.1); NZ_AXWV01000065 (original name was: NZ_AXWV01000065.1); NZ_AXWV01000066 (original name was: NZ_AXWV01000066.1); NZ_AXWV01000067 (original name was: NZ_AXWV01000067.1); NZ_AXWV01000068 (original name was: NZ_AXWV01000068.1); NZ_AXWV01000069 (original name was: NZ_AXWV01000069.1); NZ_AXWV01000070 (original name was: NZ_AXWV01000070.1); NZ_AXWV01000071 (original name was: NZ_AXWV01000071.1); NZ_AXWV01000072 (original name was: NZ_AXWV01000072.1); NZ_AXWV01000073 (original name was: NZ_AXWV01000073.1); NZ_AXWV01000074 (original name was: NZ_AXWV01000074.1); NZ_AXWV01000075 (original name was: NZ_AXWV01000075.1); NZ_AXWV01000076 (original name was: NZ_AXWV01000076.1); NZ_AXWV01000077 (original name was: NZ_AXWV01000077.1); NZ_AXWV01000078 (original name was: NZ_AXWV01000078.1); NZ_AXWV01000079 (original name was: NZ_AXWV01000079.1); NZ_AXWV01000080 (original name was: NZ_AXWV01000080.1); NZ_AXWV01000081 (original name was: NZ_AXWV01000081.1); NZ_AXWV01000082 (original name was: NZ_AXWV01000082.1); NZ_AXWV01000083 (original name was: NZ_AXWV01000083.1); NZ_AXWV01000084 (original name was: NZ_AXWV01000084.1); NZ_AXWV01000085 (original name was: NZ_AXWV01000085.1); NZ_AXWV01000086 (original name was: NZ_AXWV01000086.1); NZ_AXWV01000087 (original name was: NZ_AXWV01000087.1); NZ_AXWV01000088 (original name was: NZ_AXWV01000088.1); NZ_AXWV01000089 (original name was: NZ_AXWV01000089.1); NZ_AXWV01000090 (original name was: NZ_AXWV01000090.1); NZ_AXWV01000091 (original name was: NZ_AXWV01000091.1); NZ_AXWV01000092 (original name was: NZ_AXWV01000092.1); NZ_AXWV01000093 (original name was: NZ_AXWV01000093.1); NZ_AXWV01000094 (original name was: NZ_AXWV01000094.1); NZ_AXWV01000095 (original name was: NZ_AXWV01000095.1); NZ_AXWV01000096 (original name was: NZ_AXWV01000096.1); NZ_AXWV01000097 (original name was: NZ_AXWV01000097.1); NZ_AXWV01000098 (original name was: NZ_AXWV01000098.1); NZ_AXWV01000100 (original name was: NZ_AXWV01000100.1); NZ_AXWV01000101 (original name was: NZ_AXWV01000101.1); NZ_AXWV01000102 (original name was: NZ_AXWV01000102.1); NZ_AXWV01000103 (original name was: NZ_AXWV01000103.1); NZ_AXWV01000104 (original name was: NZ_AXWV01000104.1); NZ_AXWV01000105 (original name was: NZ_AXWV01000105.1); NZ_AXWV01000106 (original name was: NZ_AXWV01000106.1); NZ_AXWV01000107 (original name was: NZ_AXWV01000107.1); NZ_AXWV01000108 (original name was: NZ_AXWV01000108.1); NZ_AXWV01000109 (original name was: NZ_AXWV01000109.1); NZ_AXWV01000110 (original name was: NZ_AXWV01000110.1); NZ_AXWV01000111 (original name was: NZ_AXWV01000111.1); NZ_AXWV01000112 (original name was: NZ_AXWV01000112.1); NZ_AXWV01000113 (original name was: NZ_AXWV01000113.1); NZ_AXWV01000114 (original name was: NZ_AXWV01000114.1); NZ_AXWV01000115 (original name was: NZ_AXWV01000115.1); NZ_AXWV01000116 (original name was: NZ_AXWV01000116.1); NZ_AXWV01000117 (original name was: NZ_AXWV01000117.1); NZ_AXWV01000118 (original name was: NZ_AXWV01000118.1); NZ_AXWV01000119 (original name was: NZ_AXWV01000119.1); NZ_AXWV01000120 (original name was: NZ_AXWV01000120.1); NZ_AXWV01000121 (original name was: NZ_AXWV01000121.1); NZ_AXWV01000122 (original name was: NZ_AXWV01000122.1); NZ_AXWV01000123 (original name was: NZ_AXWV01000123.1); NZ_AXWV01000124 (original name was: NZ_AXWV01000124.1); NZ_AXWV01000125 (original name was: NZ_AXWV01000125.1); NZ_AXWV01000126 (original name was: NZ_AXWV01000126.1); NZ_AXWV01000127 (original name was: NZ_AXWV01000127.1); NZ_AXWV01000128 (original name was: NZ_AXWV01000128.1); NZ_AXWV01000129 (original name was: NZ_AXWV01000129.1); NZ_AXWV01000130 (original name was: NZ_AXWV01000130.1); NZ_AXWV01000131 (original name was: NZ_AXWV01000131.1); NZ_AXWV01000132 (original name was: NZ_AXWV01000132.1); NZ_AXWV01000133 (original name was: NZ_AXWV01000133.1); NZ_AXWV01000134 (original name was: NZ_AXWV01000134.1); NZ_AXWV01000135 (original name was: NZ_AXWV01000135.1); NZ_AXWV01000136 (original name was: NZ_AXWV01000136.1); NZ_AXWV01000137 (original name was: NZ_AXWV01000137.1); NZ_AXWV01000138 (original name was: NZ_AXWV01000138.1); NZ_AXWV01000139 (original name was: NZ_AXWV01000139.1); NZ_AXWV01000140 (original name was: NZ_AXWV01000140.1); NZ_AXWV01000141 (original name was: NZ_AXWV01000141.1); NZ_AXWV01000142 (original name was: NZ_AXWV01000142.1); NZ_AXWV01000143 (original name was: NZ_AXWV01000143.1); NZ_AXWV01000144 (original name was: NZ_AXWV01000144.1); NZ_AXWV01000145 (original name was: NZ_AXWV01000145.1); NZ_AXWV01000146 (original name was: NZ_AXWV01000146.1); NZ_AXWV01000147 (original name was: NZ_AXWV01000147.1); NZ_AXWV01000148 (original name was: NZ_AXWV01000148.1); NZ_AXWV01000149 (original name was: NZ_AXWV01000149.1); NZ_AXWV01000150 (original name was: NZ_AXWV01000150.1); NZ_AXWV01000151 (original name was: NZ_AXWV01000151.1); NZ_AXWV01000152 (original name was: NZ_AXWV01000152.1); NZ_AXWV01000153 (original name was: NZ_AXWV01000153.1); NZ_AXWV01000154 (original name was: NZ_AXWV01000154.1); NZ_AXWV01000155 (original name was: NZ_AXWV01000155.1); NZ_AXWV01000156 (original name was: NZ_AXWV01000156.1); NZ_AXWV01000157 (original name was: NZ_AXWV01000157.1); NZ_AXWV01000158 (original name was: NZ_AXWV01000158.1); NZ_AXWV01000159 (original name was: NZ_AXWV01000159.1); NZ_AXWV01000160 (original name was: NZ_AXWV01000160.1); NZ_AXWV01000161 (original name was: NZ_AXWV01000161.1); NZ_AXWV01000162 (original name was: NZ_AXWV01000162.1); NZ_AXWV01000163 (original name was: NZ_AXWV01000163.1)

Compact view

NZ_KI519512.1 - Region 1 - Arginine2putrescine

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Location: 34,617 - 57,465 nt. (total: 22,849 nt) Show pHMM detection rules used

Arginine2putrescine: (minimum(3, [AdoMet_dc, Amidinotransf, Arginase, OKR_DC_1, OKR_DC_1_7_arginine, OTCace]) or ((OKR_DC_1_5_ornithine or OKR_DC_1 or Orn_Arg_deC_N) and minimum(1, [Arginase, OTCace, OTCace_N, PAD_porph])))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00010_NZ_AXWV.. - Region 1 - TPP_AA_metabolism

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Location: 32,287 - 57,241 nt. (total: 24,955 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00022_NZ_AXWV.. - Region 1 - Pyruvate2acetate-formate

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Location: 11,659 - 35,404 nt. (total: 23,746 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

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resistance genes

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KnownClusterBlast

Similar known gene clusters

c00034_NZ_AXWV.. - Region 1 - Fumarate2succinate

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Location: 1 - 15,305 nt. (total: 15,305 nt) Show pHMM detection rules used

Region on contig edge.

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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KnownClusterBlast

Similar known gene clusters

c00039_NZ_AXWV.. - Region 1 - Respiratory_glycerol

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Location: 12,716 - 34,171 nt. (total: 21,456 nt) Show pHMM detection rules used

Region on contig edge.

Respiratory_glycerol: (DAO and Fer2_BFD and FAD_binding_2 and Fer4_8)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

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c00091_NZ_AXWV.. - Region 1 - Rnf_complex

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Location: 1 - 9,339 nt. (total: 9,339 nt) Show pHMM detection rules used

Region on contig edge.

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters