GCF_003860075.1_ASM386007v1_genomic - 8 region(s)

Identified primary metabolite regions

NZ_RQZC01000001 (original name was: NZ_RQZC01000001.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 1.1	Fumarate2succinate	SCFA	161,577	185,079	Fumarate to succinate B. thetaiotaomicron	SUC	66%

NZ_RQZC01000002 (original name was: NZ_RQZC01000002.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 2.1	Nitrate_reductase	E-MGC	14,302	41,332	Nitrate reductase E. coli	NIR	40%

NZ_RQZC01000028 (original name was: NZ_RQZC01000028.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 21.1	Pyruvate2acetate-formate	SCFA	24,281	47,592	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

NZ_RQZC01000005 (original name was: NZ_RQZC01000005.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 35.1	Glycine_cleavage	Other	49,157	73,961	Glycine cleavage C. sticklandii	GLY	60%
Region 35.2	TPP_AA_metabolism	Putative	178,087	195,163

NZ_RQZC01000006 (original name was: NZ_RQZC01000006.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 44.1	NADH_dehydrogenase_I	E-MGC	1	30,846	NADH dehydrogenase I E. coli	NADHD	46%
Region 44.2	Fumarate2succinate	SCFA	34,507	57,373	Fumarate to succinate B. thetaiotaomicron	SUC	66%

NZ_RQZC01000009 (original name was: NZ_RQZC01000009.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 47.1	Putrescine2spermidine	Aliphatic_amine	16,371	39,384

No primary metabolite regions were found in these records:: NZ_RQZC01000011 (original name was: NZ_RQZC01000011.1); NZ_RQZC01000012 (original name was: NZ_RQZC01000012.1); NZ_RQZC01000013 (original name was: NZ_RQZC01000013.1); NZ_RQZC01000014 (original name was: NZ_RQZC01000014.1); NZ_RQZC01000015 (original name was: NZ_RQZC01000015.1); NZ_RQZC01000016 (original name was: NZ_RQZC01000016.1); NZ_RQZC01000017 (original name was: NZ_RQZC01000017.1); NZ_RQZC01000018 (original name was: NZ_RQZC01000018.1); NZ_RQZC01000019 (original name was: NZ_RQZC01000019.1); NZ_RQZC01000020 (original name was: NZ_RQZC01000020.1); NZ_RQZC01000003 (original name was: NZ_RQZC01000003.1); NZ_RQZC01000021 (original name was: NZ_RQZC01000021.1); NZ_RQZC01000022 (original name was: NZ_RQZC01000022.1); NZ_RQZC01000023 (original name was: NZ_RQZC01000023.1); NZ_RQZC01000024 (original name was: NZ_RQZC01000024.1); NZ_RQZC01000025 (original name was: NZ_RQZC01000025.1); NZ_RQZC01000026 (original name was: NZ_RQZC01000026.1); NZ_RQZC01000027 (original name was: NZ_RQZC01000027.1); NZ_RQZC01000029 (original name was: NZ_RQZC01000029.1); NZ_RQZC01000030 (original name was: NZ_RQZC01000030.1); NZ_RQZC01000004 (original name was: NZ_RQZC01000004.1); NZ_RQZC01000031 (original name was: NZ_RQZC01000031.1); NZ_RQZC01000032 (original name was: NZ_RQZC01000032.1); NZ_RQZC01000033 (original name was: NZ_RQZC01000033.1); NZ_RQZC01000034 (original name was: NZ_RQZC01000034.1); NZ_RQZC01000035 (original name was: NZ_RQZC01000035.1); NZ_RQZC01000036 (original name was: NZ_RQZC01000036.1); NZ_RQZC01000037 (original name was: NZ_RQZC01000037.1); NZ_RQZC01000038 (original name was: NZ_RQZC01000038.1); NZ_RQZC01000039 (original name was: NZ_RQZC01000039.1); NZ_RQZC01000040 (original name was: NZ_RQZC01000040.1); NZ_RQZC01000041 (original name was: NZ_RQZC01000041.1); NZ_RQZC01000042 (original name was: NZ_RQZC01000042.1); NZ_RQZC01000043 (original name was: NZ_RQZC01000043.1); NZ_RQZC01000044 (original name was: NZ_RQZC01000044.1); NZ_RQZC01000045 (original name was: NZ_RQZC01000045.1); NZ_RQZC01000046 (original name was: NZ_RQZC01000046.1); NZ_RQZC01000047 (original name was: NZ_RQZC01000047.1); NZ_RQZC01000048 (original name was: NZ_RQZC01000048.1); NZ_RQZC01000007 (original name was: NZ_RQZC01000007.1); NZ_RQZC01000008 (original name was: NZ_RQZC01000008.1); NZ_RQZC01000010 (original name was: NZ_RQZC01000010.1)

Compact view

c00001_NZ_RQZC.. - Region 1 - Fumarate2succinate

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Location: 161,577 - 185,079 nt. (total: 23,503 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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core biosynthetic genes

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c00002_NZ_RQZC.. - Region 1 - Nitrate_reductase

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Location: 14,302 - 41,332 nt. (total: 27,031 nt) Show pHMM detection rules used

Nitrate_reductase: (Nitr_red_bet_C and Nitrate_red_del and Nitrate_red_gam and Molybdopterin and minimum(2, [Fer4_11, Molybdopterin, Molydop_binding, Nitr_red_alph_N]))

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core biosynthetic genes

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regulatory genes

resistance genes

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c00021_NZ_RQZC.. - Region 1 - Pyruvate2acetate-formate

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Location: 24,281 - 47,592 nt. (total: 23,312 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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core biosynthetic genes

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c00035_NZ_RQZC.. - Region 1 - Glycine_cleavage

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Location: 49,157 - 73,961 nt. (total: 24,805 nt) Show pHMM detection rules used

Glycine_cleavage: (minimum(2, [Aminotran_5, GCV_H, GCV_T, GDC-P, SoxG]) and GCV_H and GCV_T_C)

Legend:

core biosynthetic genes

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regulatory genes

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c00035_NZ_RQZC.. - Region 2 - TPP_AA_metabolism

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Location: 178,087 - 195,163 nt. (total: 17,077 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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core biosynthetic genes

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resistance genes

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c00044_NZ_RQZC.. - Region 1 - NADH_dehydrogenase_I

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Location: 1 - 30,846 nt. (total: 30,846 nt) Show pHMM detection rules used

Region on contig edge.

NADH_dehydrogenase_I: (Oxidored_q4 and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and NADHdh and Oxidored_q3 and Oxidored_q2 and minimum(4, [Fe-2S_thioredx, Fer2_4, Fer4_7, Molybdop_Fe4S4, Molydop_binding, NADH-G_4Fe-4S_3, NADH_4Fe-4S, Proton_antipo_M, Proton_antipo_N, SLBB]))

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c00044_NZ_RQZC.. - Region 2 - Fumarate2succinate

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Location: 34,507 - 57,373 nt. (total: 22,867 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

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regulatory genes

resistance genes

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c00047_NZ_RQZC.. - Region 1 - Putrescine2spermidine

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Location: 16,371 - 39,384 nt. (total: 23,014 nt) Show pHMM detection rules used

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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