GCF_902860075.1_LMG_26846_genomic - 16 region(s)

Identified primary metabolite regions

c00001_NZ_CADI.. (original name was: NZ_CADIKT010000001.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 1.1	TPP_fatty_acids	Putative	24,104	51,407
Region 1.2	fatty_acids-unassigned	Putative	128,248	153,142
Region 1.3	OD_fatty_acids	Putative	204,654	234,676
Region 1.4	TPP_AA_metabolism	Putative	374,920	404,807
Region 1.5	NADH_dehydrogenase_I	E-MGC	492,275	526,973	NADH dehydrogenase I E. coli	NADHD	76%
Region 1.6	Fumarate2succinate	SCFA	666,311	688,824	Fumarate2succinate suc dh E. coli	SUC	100%

c00002_NZ_CADI.. (original name was: NZ_CADIKT010000002.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 2.1	Glycine_cleavage	Other	69,369	93,908	Glycine cleavage C. sticklandii	GLY	60%
Region 2.2	TPP_fatty_acids	Putative	685,179	721,395

c00003_NZ_CADI.. (original name was: NZ_CADIKT010000003.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 3.1	acetate2butyrate	SCFA	287,022	317,890	Acetate to butyrate C. sporogenes	BUT	33%
Region 3.2	Putrescine2spermidine	Aliphatic_amine	580,330	605,409

c00009_NZ_CADI.. (original name was: NZ_CADIKT010000009.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 9.1	Fumarate2succinate	SCFA	155,390	177,473

c00011_NZ_CADI.. (original name was: NZ_CADIKT010000011.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 11.1	fatty_acids-unassigned,Formate_dehydrogenase	E-MGC	58,394	105,388	Formate dehydrogenase E. coli	FORM	100%
Region 11.2	fatty_acids-unassigned	Putative	178,522	206,566

c00014_NZ_CADI.. (original name was: NZ_CADIKT010000014.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 14.1	acetate2butyrate	SCFA	13,857	39,535

c00015_NZ_CADI.. (original name was: NZ_CADIKT010000015.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 15.1	Nitrate_reductase	E-MGC	100,329	127,006	Nitrate reductase E. coli	NIR	80%

c00016_NZ_CADI.. (original name was: NZ_CADIKT010000016.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 16.1	fatty_acids-unassigned	Putative	59,555	96,912	Acetate to butyrate C. sporogenes	BUT	33%

Region	Type	Class	From	To	Most similar known cluster	Similarity
Region 1.1	TPP_fatty_acids	Putative	24,104	51,407
Region 1.2	fatty_acids-unassigned	Putative	128,248	153,142
Region 1.3	OD_fatty_acids	Putative	204,654	234,676
Region 1.4	TPP_AA_metabolism	Putative	374,920	404,807
Region 1.5	NADH_dehydrogenase_I	E-MGC	492,275	526,973	NADH dehydrogenase I E. coli	NADHD	76%
Region 1.6	Fumarate2succinate	SCFA	666,311	688,824	Fumarate2succinate suc dh E. coli	SUC	100%
Region 2.1	Glycine_cleavage	Other	69,369	93,908	Glycine cleavage C. sticklandii	GLY	60%
Region 2.2	TPP_fatty_acids	Putative	685,179	721,395
Region 3.1	acetate2butyrate	SCFA	287,022	317,890	Acetate to butyrate C. sporogenes	BUT	33%
Region 3.2	Putrescine2spermidine	Aliphatic_amine	580,330	605,409
Region 9.1	Fumarate2succinate	SCFA	155,390	177,473
Region 11.1	fatty_acids-unassigned,Formate_dehydrogenase	E-MGC	58,394	105,388	Formate dehydrogenase E. coli	FORM	100%
Region 11.2	fatty_acids-unassigned	Putative	178,522	206,566
Region 14.1	acetate2butyrate	SCFA	13,857	39,535
Region 15.1	Nitrate_reductase	E-MGC	100,329	127,006	Nitrate reductase E. coli	NIR	80%
Region 16.1	fatty_acids-unassigned	Putative	59,555	96,912	Acetate to butyrate C. sporogenes	BUT	33%

No primary metabolite regions were found in these records:: c00004_NZ_CADI.. (original name was: NZ_CADIKT010000004.1); c00005_NZ_CADI.. (original name was: NZ_CADIKT010000005.1); c00006_NZ_CADI.. (original name was: NZ_CADIKT010000006.1); c00007_NZ_CADI.. (original name was: NZ_CADIKT010000007.1); c00008_NZ_CADI.. (original name was: NZ_CADIKT010000008.1); c00010_NZ_CADI.. (original name was: NZ_CADIKT010000010.1); c00012_NZ_CADI.. (original name was: NZ_CADIKT010000012.1); c00013_NZ_CADI.. (original name was: NZ_CADIKT010000013.1); c00017_NZ_CADI.. (original name was: NZ_CADIKT010000017.1); c00018_NZ_CADI.. (original name was: NZ_CADIKT010000018.1); c00019_NZ_CADI.. (original name was: NZ_CADIKT010000019.1); c00020_NZ_CADI.. (original name was: NZ_CADIKT010000020.1); c00021_NZ_CADI.. (original name was: NZ_CADIKT010000021.1); c00022_NZ_CADI.. (original name was: NZ_CADIKT010000022.1); c00023_NZ_CADI.. (original name was: NZ_CADIKT010000023.1); c00024_NZ_CADI.. (original name was: NZ_CADIKT010000024.1); c00025_NZ_CADI.. (original name was: NZ_CADIKT010000025.1); c00026_NZ_CADI.. (original name was: NZ_CADIKT010000026.1); c00027_NZ_CADI.. (original name was: NZ_CADIKT010000027.1); c00028_NZ_CADI.. (original name was: NZ_CADIKT010000028.1); c00029_NZ_CADI.. (original name was: NZ_CADIKT010000029.1); c00030_NZ_CADI.. (original name was: NZ_CADIKT010000030.1); c00031_NZ_CADI.. (original name was: NZ_CADIKT010000031.1); c00032_NZ_CADI.. (original name was: NZ_CADIKT010000032.1); c00033_NZ_CADI.. (original name was: NZ_CADIKT010000033.1); c00034_NZ_CADI.. (original name was: NZ_CADIKT010000034.1); c00035_NZ_CADI.. (original name was: NZ_CADIKT010000035.1); c00036_NZ_CADI.. (original name was: NZ_CADIKT010000036.1); c00037_NZ_CADI.. (original name was: NZ_CADIKT010000037.1); c00038_NZ_CADI.. (original name was: NZ_CADIKT010000038.1); c00039_NZ_CADI.. (original name was: NZ_CADIKT010000039.1); c00040_NZ_CADI.. (original name was: NZ_CADIKT010000040.1); c00041_NZ_CADI.. (original name was: NZ_CADIKT010000041.1); c00042_NZ_CADI.. (original name was: NZ_CADIKT010000042.1); c00043_NZ_CADI.. (original name was: NZ_CADIKT010000043.1); c00044_NZ_CADI.. (original name was: NZ_CADIKT010000044.1); c00045_NZ_CADI.. (original name was: NZ_CADIKT010000045.1); c00046_NZ_CADI.. (original name was: NZ_CADIKT010000046.1); c00047_NZ_CADI.. (original name was: NZ_CADIKT010000047.1); c00048_NZ_CADI.. (original name was: NZ_CADIKT010000048.1)

Compact view

c00001_NZ_CADI.. - Region 1 - TPP_fatty_acids

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Location: 24,104 - 51,407 nt. (total: 27,304 nt) Show pHMM detection rules used

TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))

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c00001_NZ_CADI.. - Region 2 - fatty_acids-unassigned

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Location: 128,248 - 153,142 nt. (total: 24,895 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

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c00001_NZ_CADI.. - Region 3 - OD_fatty_acids

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Location: 204,654 - 234,676 nt. (total: 30,023 nt) Show pHMM detection rules used

OD_fatty_acids: (minimum(1, [PFOR_II, POR, POR_N]) and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (Gly_radical_scatole or Gly_radical or Gly_430_pcre or Gly_8-9_TMA))

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c00001_NZ_CADI.. - Region 4 - TPP_AA_metabolism

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Location: 374,920 - 404,807 nt. (total: 29,888 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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c00001_NZ_CADI.. - Region 5 - NADH_dehydrogenase_I

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Location: 492,275 - 526,973 nt. (total: 34,699 nt) Show pHMM detection rules used

NADH_dehydrogenase_I: (Oxidored_q4 and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and NADHdh and Oxidored_q3 and Oxidored_q2 and minimum(4, [Fe-2S_thioredx, Fer2_4, Fer4_7, Molybdop_Fe4S4, Molydop_binding, NADH-G_4Fe-4S_3, NADH_4Fe-4S, Proton_antipo_M, Proton_antipo_N, SLBB]))

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c00001_NZ_CADI.. - Region 6 - Fumarate2succinate

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Location: 666,311 - 688,824 nt. (total: 22,514 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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c00002_NZ_CADI.. - Region 1 - Glycine_cleavage

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Location: 69,369 - 93,908 nt. (total: 24,540 nt) Show pHMM detection rules used

Glycine_cleavage: (minimum(2, [Aminotran_5, GCV_H, GCV_T, GDC-P, SoxG]) and GCV_H and GCV_T_C)

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c00002_NZ_CADI.. - Region 2 - TPP_fatty_acids

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Location: 685,179 - 721,395 nt. (total: 36,217 nt) Show pHMM detection rules used

TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))

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core biosynthetic genes

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c00003_NZ_CADI.. - Region 1 - acetate2butyrate

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Location: 287,022 - 317,890 nt. (total: 30,869 nt) Show pHMM detection rules used

acetate2butyrate: (not (POR or POR_N or PFOR_II) and minimum(4, [Acyl-CoA_dh_1, Acyl-CoA_dh_2, ECH_2, ETF, ETF_alpha, HCDH_N, Thiolase_N, ketoacyl-synt]) and HCDH and minimum(1, [EC1_2-faecali, ECH1_Enoyl_CoA_DH1, ECH1_Enoyl_CoA_DH2, ECH1_Enoyl_CoA_DH3, ECH1_Enoyl_CoA_DH4, Thiolase_C]))

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c00003_NZ_CADI.. - Region 2 - Putrescine2spermidine

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Location: 580,330 - 605,409 nt. (total: 25,080 nt) Show pHMM detection rules used

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

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c00009_NZ_CADI.. - Region 1 - Fumarate2succinate

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Location: 155,390 - 177,473 nt. (total: 22,084 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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c00011_NZ_CADI.. - Region 1 - Formate_dehydrogenase,fatty_acids-unassigned

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Location: 58,394 - 105,388 nt. (total: 46,995 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))
Formate_dehydrogenase: (Molybdopterin and Form-deh_trans and not (Nitr_red_bet_C or Nitr_red_alph_N) and minimum(3, [Fer4_11, Fer4_4, Molybdop_Fe4S4, Molydop_binding, Ni_hydr_CYTB]))

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c00011_NZ_CADI.. - Region 2 - fatty_acids-unassigned

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Location: 178,522 - 206,566 nt. (total: 28,045 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

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core biosynthetic genes

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c00014_NZ_CADI.. - Region 1 - acetate2butyrate

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Location: 13,857 - 39,535 nt. (total: 25,679 nt) Show pHMM detection rules used

acetate2butyrate: (not (POR or POR_N or PFOR_II) and minimum(4, [Acyl-CoA_dh_1, Acyl-CoA_dh_2, ECH_2, ETF, ETF_alpha, HCDH_N, Thiolase_N, ketoacyl-synt]) and HCDH and minimum(1, [EC1_2-faecali, ECH1_Enoyl_CoA_DH1, ECH1_Enoyl_CoA_DH2, ECH1_Enoyl_CoA_DH3, ECH1_Enoyl_CoA_DH4, Thiolase_C]))

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core biosynthetic genes

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c00015_NZ_CADI.. - Region 1 - Nitrate_reductase

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Location: 100,329 - 127,006 nt. (total: 26,678 nt) Show pHMM detection rules used

Nitrate_reductase: (Nitr_red_bet_C and Nitrate_red_del and Nitrate_red_gam and Molybdopterin and minimum(2, [Fer4_11, Molybdopterin, Molydop_binding, Nitr_red_alph_N]))

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c00016_NZ_CADI.. - Region 1 - fatty_acids-unassigned

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Location: 59,555 - 96,912 nt. (total: 37,358 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

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core biosynthetic genes

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