GCF_000321165.1_ASM32116v1_genomic - 4 region(s)

Identified primary metabolite regions

NZ_CAPF01000089 (original name was: NZ_CAPF01000089.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 22.1	Arginine2putrescine	Aliphatic_amine	1	22,073

NZ_CAPF01000074 (original name was: NZ_CAPF01000074.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 37.1	Others_HGD_unassigned	Putative	27,447	43,023

NZ_CAPF01000072 (original name was: NZ_CAPF01000072.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 39.1	TPP_AA_metabolism	Putative	1	8,777

NZ_CAPF01000050 (original name was: NZ_CAPF01000050.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 61.1	Pyruvate2acetate-formate	SCFA	57,046	70,750	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

Region	Type	Class	From	To	Most similar known cluster	Similarity
Region 22.1	Arginine2putrescine	Aliphatic_amine	1	22,073
Region 37.1	Others_HGD_unassigned	Putative	27,447	43,023
Region 39.1	TPP_AA_metabolism	Putative	1	8,777
Region 61.1	Pyruvate2acetate-formate	SCFA	57,046	70,750	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

No primary metabolite regions were found in these records:: NZ_CAPF01000110 (original name was: NZ_CAPF01000110.1); NZ_CAPF01000109 (original name was: NZ_CAPF01000109.1); NZ_CAPF01000108 (original name was: NZ_CAPF01000108.1); NZ_CAPF01000107 (original name was: NZ_CAPF01000107.1); NZ_CAPF01000106 (original name was: NZ_CAPF01000106.1); NZ_CAPF01000105 (original name was: NZ_CAPF01000105.1); NZ_CAPF01000104 (original name was: NZ_CAPF01000104.1); NZ_CAPF01000103 (original name was: NZ_CAPF01000103.1); NZ_CAPF01000102 (original name was: NZ_CAPF01000102.1); NZ_CAPF01000101 (original name was: NZ_CAPF01000101.1); NZ_CAPF01000100 (original name was: NZ_CAPF01000100.1); NZ_CAPF01000099 (original name was: NZ_CAPF01000099.1); NZ_CAPF01000098 (original name was: NZ_CAPF01000098.1); NZ_CAPF01000097 (original name was: NZ_CAPF01000097.1); NZ_CAPF01000096 (original name was: NZ_CAPF01000096.1); NZ_CAPF01000095 (original name was: NZ_CAPF01000095.1); NZ_CAPF01000094 (original name was: NZ_CAPF01000094.1); NZ_CAPF01000093 (original name was: NZ_CAPF01000093.1); NZ_CAPF01000092 (original name was: NZ_CAPF01000092.1); NZ_CAPF01000091 (original name was: NZ_CAPF01000091.1); NZ_CAPF01000090 (original name was: NZ_CAPF01000090.1); NZ_CAPF01000088 (original name was: NZ_CAPF01000088.1); NZ_CAPF01000087 (original name was: NZ_CAPF01000087.1); NZ_CAPF01000086 (original name was: NZ_CAPF01000086.1); NZ_CAPF01000085 (original name was: NZ_CAPF01000085.1); NZ_CAPF01000084 (original name was: NZ_CAPF01000084.1); NZ_CAPF01000083 (original name was: NZ_CAPF01000083.1); NZ_CAPF01000082 (original name was: NZ_CAPF01000082.1); NZ_CAPF01000081 (original name was: NZ_CAPF01000081.1); NZ_CAPF01000080 (original name was: NZ_CAPF01000080.1); NZ_CAPF01000079 (original name was: NZ_CAPF01000079.1); NZ_CAPF01000078 (original name was: NZ_CAPF01000078.1); NZ_CAPF01000077 (original name was: NZ_CAPF01000077.1); NZ_CAPF01000076 (original name was: NZ_CAPF01000076.1); NZ_CAPF01000075 (original name was: NZ_CAPF01000075.1); NZ_CAPF01000073 (original name was: NZ_CAPF01000073.1); NZ_CAPF01000071 (original name was: NZ_CAPF01000071.1); NZ_CAPF01000070 (original name was: NZ_CAPF01000070.1); NZ_CAPF01000069 (original name was: NZ_CAPF01000069.1); NZ_CAPF01000068 (original name was: NZ_CAPF01000068.1); NZ_CAPF01000067 (original name was: NZ_CAPF01000067.1); NZ_CAPF01000066 (original name was: NZ_CAPF01000066.1); NZ_CAPF01000065 (original name was: NZ_CAPF01000065.1); NZ_CAPF01000064 (original name was: NZ_CAPF01000064.1); NZ_CAPF01000063 (original name was: NZ_CAPF01000063.1); NZ_CAPF01000062 (original name was: NZ_CAPF01000062.1); NZ_CAPF01000061 (original name was: NZ_CAPF01000061.1); NZ_CAPF01000060 (original name was: NZ_CAPF01000060.1); NZ_CAPF01000059 (original name was: NZ_CAPF01000059.1); NZ_CAPF01000058 (original name was: NZ_CAPF01000058.1); NZ_CAPF01000057 (original name was: NZ_CAPF01000057.1); NZ_CAPF01000056 (original name was: NZ_CAPF01000056.1); NZ_CAPF01000055 (original name was: NZ_CAPF01000055.1); NZ_CAPF01000054 (original name was: NZ_CAPF01000054.1); NZ_CAPF01000053 (original name was: NZ_CAPF01000053.1); NZ_CAPF01000052 (original name was: NZ_CAPF01000052.1); NZ_CAPF01000051 (original name was: NZ_CAPF01000051.1); NZ_CAPF01000049 (original name was: NZ_CAPF01000049.1); NZ_CAPF01000048 (original name was: NZ_CAPF01000048.1); NZ_CAPF01000047 (original name was: NZ_CAPF01000047.1); NZ_CAPF01000046 (original name was: NZ_CAPF01000046.1); NZ_CAPF01000045 (original name was: NZ_CAPF01000045.1); NZ_CAPF01000044 (original name was: NZ_CAPF01000044.1); NZ_CAPF01000043 (original name was: NZ_CAPF01000043.1); NZ_CAPF01000042 (original name was: NZ_CAPF01000042.1); NZ_CAPF01000041 (original name was: NZ_CAPF01000041.1); NZ_CAPF01000040 (original name was: NZ_CAPF01000040.1); NZ_CAPF01000039 (original name was: NZ_CAPF01000039.1); NZ_CAPF01000038 (original name was: NZ_CAPF01000038.1); NZ_CAPF01000037 (original name was: NZ_CAPF01000037.1); NZ_CAPF01000036 (original name was: NZ_CAPF01000036.1); NZ_CAPF01000035 (original name was: NZ_CAPF01000035.1); NZ_CAPF01000034 (original name was: NZ_CAPF01000034.1); NZ_CAPF01000033 (original name was: NZ_CAPF01000033.1); NZ_CAPF01000032 (original name was: NZ_CAPF01000032.1); NZ_CAPF01000031 (original name was: NZ_CAPF01000031.1); NZ_CAPF01000030 (original name was: NZ_CAPF01000030.1); NZ_CAPF01000029 (original name was: NZ_CAPF01000029.1); NZ_CAPF01000028 (original name was: NZ_CAPF01000028.1); NZ_CAPF01000027 (original name was: NZ_CAPF01000027.1); NZ_CAPF01000026 (original name was: NZ_CAPF01000026.1); NZ_CAPF01000025 (original name was: NZ_CAPF01000025.1); NZ_CAPF01000024 (original name was: NZ_CAPF01000024.1); NZ_CAPF01000023 (original name was: NZ_CAPF01000023.1); NZ_CAPF01000022 (original name was: NZ_CAPF01000022.1); NZ_CAPF01000021 (original name was: NZ_CAPF01000021.1); NZ_CAPF01000020 (original name was: NZ_CAPF01000020.1); NZ_CAPF01000019 (original name was: NZ_CAPF01000019.1); NZ_CAPF01000018 (original name was: NZ_CAPF01000018.1); NZ_CAPF01000017 (original name was: NZ_CAPF01000017.1); NZ_CAPF01000016 (original name was: NZ_CAPF01000016.1); NZ_CAPF01000015 (original name was: NZ_CAPF01000015.1); NZ_CAPF01000014 (original name was: NZ_CAPF01000014.1); NZ_CAPF01000013 (original name was: NZ_CAPF01000013.1); NZ_CAPF01000012 (original name was: NZ_CAPF01000012.1); NZ_CAPF01000011 (original name was: NZ_CAPF01000011.1); NZ_CAPF01000010 (original name was: NZ_CAPF01000010.1); NZ_CAPF01000009 (original name was: NZ_CAPF01000009.1); NZ_CAPF01000008 (original name was: NZ_CAPF01000008.1); NZ_CAPF01000007 (original name was: NZ_CAPF01000007.1); NZ_CAPF01000006 (original name was: NZ_CAPF01000006.1); NZ_CAPF01000005 (original name was: NZ_CAPF01000005.1); NZ_CAPF01000004 (original name was: NZ_CAPF01000004.1); NZ_CAPF01000003 (original name was: NZ_CAPF01000003.1); NZ_CAPF01000002 (original name was: NZ_CAPF01000002.1); NZ_CAPF01000001 (original name was: NZ_CAPF01000001.1)

Compact view

c00022_NZ_CAPF.. - Region 1 - Arginine2putrescine

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Location: 1 - 22,073 nt. (total: 22,073 nt) Show pHMM detection rules used

Region on contig edge.

Arginine2putrescine: (minimum(3, [AdoMet_dc, Amidinotransf, Arginase, OKR_DC_1, OKR_DC_1_7_arginine, OTCace]) or ((OKR_DC_1_5_ornithine or OKR_DC_1 or Orn_Arg_deC_N) and minimum(1, [Arginase, OTCace, OTCace_N, PAD_porph])))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00037_NZ_CAPF.. - Region 1 - Others_HGD_unassigned

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Location: 27,447 - 43,023 nt. (total: 15,577 nt) Show pHMM detection rules used

Region on contig edge.

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00039_NZ_CAPF.. - Region 1 - TPP_AA_metabolism

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Location: 1 - 8,777 nt. (total: 8,777 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

TTA codons

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00061_NZ_CAPF.. - Region 1 - Pyruvate2acetate-formate

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Location: 57,046 - 70,750 nt. (total: 13,705 nt) Show pHMM detection rules used

Region on contig edge.

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

TTA codons

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zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters