GCF_029167075.1_ASM2916707v1_genomic - 15 region(s)

Identified primary metabolite regions

c00001_NZ_JARF.. (original name was: NZ_JARFMK010000010.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 1.1	histidine2glutamate_hutHGIU_operon	Other	193,415	219,312	Histidine to glutamate K. pneumoniae	GLU	80%

c00002_NZ_JARF.. (original name was: NZ_JARFMK010000011.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 2.1	TPP_AA_metabolism,Fumarate2succinate	SCFA	30,553	79,816

c00003_NZ_JARF.. (original name was: NZ_JARFMK010000012.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 3.1	fatty_acids-unassigned	Putative	131,407	156,694

c00005_NZ_JARF.. (original name was: NZ_JARFMK010000014.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 5.1	Fumarate2succinate	SCFA	1	19,279	Fumarate2succinate suc dh E. coli	SUC	100%

c00007_NZ_JARF.. (original name was: NZ_JARFMK010000016.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 7.1	Glycine_cleavage	Other	62,389	86,931	Glycine cleavage C. sticklandii	GLY	80%

c00009_NZ_JARF.. (original name was: NZ_JARFMK010000018.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 9.1	TPP_fatty_acids	Putative	87,661	139,610

c00010_NZ_JARF.. (original name was: NZ_JARFMK010000019.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 10.1	TPP_fatty_acids	Putative	86,576	126,741

c00011_NZ_JARF.. (original name was: NZ_JARFMK010000001.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 11.1	TPP_fatty_acids,fatty_acids-unassigned	Putative	205,589	247,605

c00021_NZ_JARF.. (original name was: NZ_JARFMK010000029.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 21.1	fatty_acids-unassigned	Putative	4,991	28,363

c00022_NZ_JARF.. (original name was: NZ_JARFMK010000002.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 22.1	TPP_AA_metabolism	Putative	594,633	621,337

c00028_NZ_JARF.. (original name was: NZ_JARFMK010000035.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 28.1	fatty_acids-unassigned	Putative	1	19,086

c00033_NZ_JARF.. (original name was: NZ_JARFMK010000003.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 33.1	TPP_fatty_acids	Putative	77,730	116,379

c00044_NZ_JARF.. (original name was: NZ_JARFMK010000004.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 44.1	fatty_acids-unassigned	Putative	80,875	111,796

c00055_NZ_JARF.. (original name was: NZ_JARFMK010000005.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 55.1	OD_fatty_acids	Putative	252,949	292,398

c00059_NZ_JARF.. (original name was: NZ_JARFMK010000007.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 59.1	NADH_dehydrogenase_I	E-MGC	268,539	304,211	NADH dehydrogenase I E. coli	NADHD	76%

No primary metabolite regions were found in these records:: c00004_NZ_JARF.. (original name was: NZ_JARFMK010000013.1); c00006_NZ_JARF.. (original name was: NZ_JARFMK010000015.1); c00008_NZ_JARF.. (original name was: NZ_JARFMK010000017.1); c00012_NZ_JARF.. (original name was: NZ_JARFMK010000020.1); c00013_NZ_JARF.. (original name was: NZ_JARFMK010000021.1); c00014_NZ_JARF.. (original name was: NZ_JARFMK010000022.1); c00015_NZ_JARF.. (original name was: NZ_JARFMK010000023.1); c00016_NZ_JARF.. (original name was: NZ_JARFMK010000024.1); c00017_NZ_JARF.. (original name was: NZ_JARFMK010000025.1); c00018_NZ_JARF.. (original name was: NZ_JARFMK010000026.1); c00019_NZ_JARF.. (original name was: NZ_JARFMK010000027.1); c00020_NZ_JARF.. (original name was: NZ_JARFMK010000028.1); c00023_NZ_JARF.. (original name was: NZ_JARFMK010000030.1); c00024_NZ_JARF.. (original name was: NZ_JARFMK010000031.1); c00025_NZ_JARF.. (original name was: NZ_JARFMK010000032.1); c00026_NZ_JARF.. (original name was: NZ_JARFMK010000033.1); c00027_NZ_JARF.. (original name was: NZ_JARFMK010000034.1); c00029_NZ_JARF.. (original name was: NZ_JARFMK010000036.1); c00030_NZ_JARF.. (original name was: NZ_JARFMK010000037.1); c00031_NZ_JARF.. (original name was: NZ_JARFMK010000038.1); c00032_NZ_JARF.. (original name was: NZ_JARFMK010000039.1); c00034_NZ_JARF.. (original name was: NZ_JARFMK010000040.1); c00035_NZ_JARF.. (original name was: NZ_JARFMK010000041.1); c00036_NZ_JARF.. (original name was: NZ_JARFMK010000042.1); c00037_NZ_JARF.. (original name was: NZ_JARFMK010000043.1); c00038_NZ_JARF.. (original name was: NZ_JARFMK010000044.1); c00039_NZ_JARF.. (original name was: NZ_JARFMK010000045.1); c00040_NZ_JARF.. (original name was: NZ_JARFMK010000046.1); c00041_NZ_JARF.. (original name was: NZ_JARFMK010000047.1); c00042_NZ_JARF.. (original name was: NZ_JARFMK010000048.1); c00043_NZ_JARF.. (original name was: NZ_JARFMK010000049.1); c00045_NZ_JARF.. (original name was: NZ_JARFMK010000050.1); c00046_NZ_JARF.. (original name was: NZ_JARFMK010000051.1); c00047_NZ_JARF.. (original name was: NZ_JARFMK010000052.1); c00048_NZ_JARF.. (original name was: NZ_JARFMK010000053.1); c00049_NZ_JARF.. (original name was: NZ_JARFMK010000054.1); c00050_NZ_JARF.. (original name was: NZ_JARFMK010000055.1); c00051_NZ_JARF.. (original name was: NZ_JARFMK010000056.1); c00052_NZ_JARF.. (original name was: NZ_JARFMK010000057.1); c00053_NZ_JARF.. (original name was: NZ_JARFMK010000058.1); c00054_NZ_JARF.. (original name was: NZ_JARFMK010000059.1); c00056_NZ_JARF.. (original name was: NZ_JARFMK010000060.1); c00057_NZ_JARF.. (original name was: NZ_JARFMK010000061.1); c00058_NZ_JARF.. (original name was: NZ_JARFMK010000006.1); c00060_NZ_JARF.. (original name was: NZ_JARFMK010000008.1); c00061_NZ_JARF.. (original name was: NZ_JARFMK010000009.1)

Compact view

c00001_NZ_JARF.. - Region 1 - histidine2glutamate_hutHGIU_operon

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Location: 193,415 - 219,312 nt. (total: 25,898 nt) Show pHMM detection rules used

histidine2glutamate_hutHGIU_operon: (minimum(3, [Amidohydro_1, Amidohydro_3, Arginase, FGase, Urocanase]) and Lyase_aromatic and Urocanase_C)

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c00002_NZ_JARF.. - Region 1 - Fumarate2succinate,TPP_AA_metabolism

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Location: 30,553 - 79,816 nt. (total: 49,264 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))
Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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core biosynthetic genes

additional biosynthetic genes

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resistance genes

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No matches found.

c00003_NZ_JARF.. - Region 1 - fatty_acids-unassigned

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Location: 131,407 - 156,694 nt. (total: 25,288 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

TTA codons

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No matches found.

c00005_NZ_JARF.. - Region 1 - Fumarate2succinate

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Location: 1 - 19,279 nt. (total: 19,279 nt) Show pHMM detection rules used

Region on contig edge.

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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core biosynthetic genes

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transport-related genes

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c00007_NZ_JARF.. - Region 1 - Glycine_cleavage

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Location: 62,389 - 86,931 nt. (total: 24,543 nt) Show pHMM detection rules used

Glycine_cleavage: (minimum(2, [Aminotran_5, GCV_H, GCV_T, GDC-P, SoxG]) and GCV_H and GCV_T_C)

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core biosynthetic genes

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c00009_NZ_JARF.. - Region 1 - TPP_fatty_acids

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Location: 87,661 - 139,610 nt. (total: 51,950 nt) Show pHMM detection rules used

TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))

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core biosynthetic genes

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resistance genes

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c00010_NZ_JARF.. - Region 1 - TPP_fatty_acids

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Location: 86,576 - 126,741 nt. (total: 40,166 nt) Show pHMM detection rules used

TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))

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core biosynthetic genes

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c00011_NZ_JARF.. - Region 1 - TPP_fatty_acids,fatty_acids-unassigned

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Location: 205,589 - 247,605 nt. (total: 42,017 nt) Show pHMM detection rules used

TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))
fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

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core biosynthetic genes

additional biosynthetic genes

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resistance genes

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c00021_NZ_JARF.. - Region 1 - fatty_acids-unassigned

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Location: 4,991 - 28,363 nt. (total: 23,373 nt) Show pHMM detection rules used

Region on contig edge.

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

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core biosynthetic genes

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c00022_NZ_JARF.. - Region 1 - TPP_AA_metabolism

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Location: 594,633 - 621,337 nt. (total: 26,705 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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core biosynthetic genes

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c00028_NZ_JARF.. - Region 1 - fatty_acids-unassigned

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Location: 1 - 19,086 nt. (total: 19,086 nt) Show pHMM detection rules used

Region on contig edge.

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

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core biosynthetic genes

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c00033_NZ_JARF.. - Region 1 - TPP_fatty_acids

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Location: 77,730 - 116,379 nt. (total: 38,650 nt) Show pHMM detection rules used

TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))

Legend:

core biosynthetic genes

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c00044_NZ_JARF.. - Region 1 - fatty_acids-unassigned

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Location: 80,875 - 111,796 nt. (total: 30,922 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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c00055_NZ_JARF.. - Region 1 - OD_fatty_acids

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Location: 252,949 - 292,398 nt. (total: 39,450 nt) Show pHMM detection rules used

OD_fatty_acids: (minimum(1, [PFOR_II, POR, POR_N]) and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (Gly_radical_scatole or Gly_radical or Gly_430_pcre or Gly_8-9_TMA))

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c00059_NZ_JARF.. - Region 1 - NADH_dehydrogenase_I

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Location: 268,539 - 304,211 nt. (total: 35,673 nt) Show pHMM detection rules used

NADH_dehydrogenase_I: (Oxidored_q4 and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and NADHdh and Oxidored_q3 and Oxidored_q2 and minimum(4, [Fe-2S_thioredx, Fer2_4, Fer4_7, Molybdop_Fe4S4, Molydop_binding, NADH-G_4Fe-4S_3, NADH_4Fe-4S, Proton_antipo_M, Proton_antipo_N, SLBB]))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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