GCF_000425005.1_ASM42500v1_genomic - 4 region(s)

Identified primary metabolite regions

NZ_AUKY01000004 (original name was: NZ_AUKY01000004.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 4.1	Pyruvate2acetate-formate	SCFA	28,371	51,444	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

NZ_AUKY01000031 (original name was: NZ_AUKY01000031.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 31.1	Others_HGD_unassigned	Putative	709	23,329

NZ_KE384293.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 32.1	Rnf_complex	E-MGC	371	21,940	Rnf complex C. sporogenes	RNF	50%

NZ_AUKY01000040 (original name was: NZ_AUKY01000040.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 39.1	Arginine2_Hcarbonate	Other	1	19,743	Arginine to hydrogen carbonate P. aeruginosa	ARG	66%

No primary metabolite regions were found in these records:: NZ_AUKY01000001 (original name was: NZ_AUKY01000001.1); NZ_AUKY01000002 (original name was: NZ_AUKY01000002.1); NZ_AUKY01000003 (original name was: NZ_AUKY01000003.1); NZ_AUKY01000005 (original name was: NZ_AUKY01000005.1); NZ_AUKY01000006 (original name was: NZ_AUKY01000006.1); NZ_AUKY01000007 (original name was: NZ_AUKY01000007.1); NZ_AUKY01000008 (original name was: NZ_AUKY01000008.1); NZ_AUKY01000009 (original name was: NZ_AUKY01000009.1); NZ_AUKY01000010 (original name was: NZ_AUKY01000010.1); NZ_AUKY01000011 (original name was: NZ_AUKY01000011.1); NZ_AUKY01000012 (original name was: NZ_AUKY01000012.1); NZ_AUKY01000013 (original name was: NZ_AUKY01000013.1); NZ_AUKY01000014 (original name was: NZ_AUKY01000014.1); NZ_AUKY01000015 (original name was: NZ_AUKY01000015.1); NZ_AUKY01000016 (original name was: NZ_AUKY01000016.1); NZ_AUKY01000017 (original name was: NZ_AUKY01000017.1); NZ_AUKY01000018 (original name was: NZ_AUKY01000018.1); NZ_AUKY01000019 (original name was: NZ_AUKY01000019.1); NZ_AUKY01000020 (original name was: NZ_AUKY01000020.1); NZ_AUKY01000021 (original name was: NZ_AUKY01000021.1); NZ_AUKY01000022 (original name was: NZ_AUKY01000022.1); NZ_AUKY01000023 (original name was: NZ_AUKY01000023.1); NZ_AUKY01000024 (original name was: NZ_AUKY01000024.1); NZ_AUKY01000025 (original name was: NZ_AUKY01000025.1); NZ_AUKY01000026 (original name was: NZ_AUKY01000026.1); NZ_AUKY01000027 (original name was: NZ_AUKY01000027.1); NZ_AUKY01000028 (original name was: NZ_AUKY01000028.1); NZ_AUKY01000029 (original name was: NZ_AUKY01000029.1); NZ_AUKY01000030 (original name was: NZ_AUKY01000030.1); NZ_AUKY01000034 (original name was: NZ_AUKY01000034.1); NZ_AUKY01000035 (original name was: NZ_AUKY01000035.1); NZ_AUKY01000036 (original name was: NZ_AUKY01000036.1); NZ_AUKY01000037 (original name was: NZ_AUKY01000037.1); NZ_AUKY01000038 (original name was: NZ_AUKY01000038.1); NZ_AUKY01000039 (original name was: NZ_AUKY01000039.1); NZ_AUKY01000041 (original name was: NZ_AUKY01000041.1); NZ_AUKY01000042 (original name was: NZ_AUKY01000042.1); NZ_AUKY01000043 (original name was: NZ_AUKY01000043.1); NZ_AUKY01000044 (original name was: NZ_AUKY01000044.1); NZ_AUKY01000045 (original name was: NZ_AUKY01000045.1); NZ_AUKY01000046 (original name was: NZ_AUKY01000046.1); NZ_AUKY01000047 (original name was: NZ_AUKY01000047.1); NZ_AUKY01000048 (original name was: NZ_AUKY01000048.1); NZ_AUKY01000049 (original name was: NZ_AUKY01000049.1); NZ_AUKY01000050 (original name was: NZ_AUKY01000050.1); NZ_AUKY01000051 (original name was: NZ_AUKY01000051.1); NZ_AUKY01000052 (original name was: NZ_AUKY01000052.1); NZ_AUKY01000053 (original name was: NZ_AUKY01000053.1); NZ_AUKY01000054 (original name was: NZ_AUKY01000054.1); NZ_AUKY01000055 (original name was: NZ_AUKY01000055.1); NZ_AUKY01000056 (original name was: NZ_AUKY01000056.1); NZ_AUKY01000057 (original name was: NZ_AUKY01000057.1); NZ_AUKY01000058 (original name was: NZ_AUKY01000058.1); NZ_AUKY01000059 (original name was: NZ_AUKY01000059.1); NZ_AUKY01000060 (original name was: NZ_AUKY01000060.1); NZ_AUKY01000061 (original name was: NZ_AUKY01000061.1); NZ_AUKY01000062 (original name was: NZ_AUKY01000062.1); NZ_AUKY01000063 (original name was: NZ_AUKY01000063.1); NZ_AUKY01000064 (original name was: NZ_AUKY01000064.1); NZ_AUKY01000065 (original name was: NZ_AUKY01000065.1); NZ_AUKY01000066 (original name was: NZ_AUKY01000066.1); NZ_AUKY01000067 (original name was: NZ_AUKY01000067.1); NZ_AUKY01000068 (original name was: NZ_AUKY01000068.1); NZ_AUKY01000069 (original name was: NZ_AUKY01000069.1); NZ_AUKY01000070 (original name was: NZ_AUKY01000070.1); NZ_AUKY01000071 (original name was: NZ_AUKY01000071.1); NZ_AUKY01000072 (original name was: NZ_AUKY01000072.1); NZ_AUKY01000073 (original name was: NZ_AUKY01000073.1); NZ_AUKY01000074 (original name was: NZ_AUKY01000074.1); NZ_AUKY01000075 (original name was: NZ_AUKY01000075.1); NZ_AUKY01000076 (original name was: NZ_AUKY01000076.1); NZ_AUKY01000077 (original name was: NZ_AUKY01000077.1); NZ_AUKY01000078 (original name was: NZ_AUKY01000078.1); NZ_AUKY01000079 (original name was: NZ_AUKY01000079.1); NZ_AUKY01000080 (original name was: NZ_AUKY01000080.1); NZ_AUKY01000081 (original name was: NZ_AUKY01000081.1); NZ_AUKY01000082 (original name was: NZ_AUKY01000082.1); NZ_AUKY01000083 (original name was: NZ_AUKY01000083.1); NZ_AUKY01000084 (original name was: NZ_AUKY01000084.1); NZ_AUKY01000085 (original name was: NZ_AUKY01000085.1); NZ_AUKY01000086 (original name was: NZ_AUKY01000086.1); NZ_AUKY01000087 (original name was: NZ_AUKY01000087.1); NZ_AUKY01000088 (original name was: NZ_AUKY01000088.1); NZ_AUKY01000089 (original name was: NZ_AUKY01000089.1); NZ_AUKY01000090 (original name was: NZ_AUKY01000090.1); NZ_AUKY01000091 (original name was: NZ_AUKY01000091.1); NZ_AUKY01000092 (original name was: NZ_AUKY01000092.1); NZ_AUKY01000093 (original name was: NZ_AUKY01000093.1); NZ_AUKY01000094 (original name was: NZ_AUKY01000094.1); NZ_AUKY01000095 (original name was: NZ_AUKY01000095.1); NZ_AUKY01000096 (original name was: NZ_AUKY01000096.1); NZ_AUKY01000097 (original name was: NZ_AUKY01000097.1); NZ_AUKY01000098 (original name was: NZ_AUKY01000098.1); NZ_AUKY01000099 (original name was: NZ_AUKY01000099.1); NZ_AUKY01000100 (original name was: NZ_AUKY01000100.1); NZ_AUKY01000101 (original name was: NZ_AUKY01000101.1); NZ_AUKY01000102 (original name was: NZ_AUKY01000102.1); NZ_AUKY01000103 (original name was: NZ_AUKY01000103.1); NZ_AUKY01000104 (original name was: NZ_AUKY01000104.1); NZ_AUKY01000105 (original name was: NZ_AUKY01000105.1); NZ_AUKY01000106 (original name was: NZ_AUKY01000106.1); NZ_AUKY01000107 (original name was: NZ_AUKY01000107.1); NZ_AUKY01000108 (original name was: NZ_AUKY01000108.1); NZ_AUKY01000109 (original name was: NZ_AUKY01000109.1); NZ_AUKY01000110 (original name was: NZ_AUKY01000110.1); NZ_AUKY01000111 (original name was: NZ_AUKY01000111.1); NZ_AUKY01000112 (original name was: NZ_AUKY01000112.1); NZ_AUKY01000113 (original name was: NZ_AUKY01000113.1); NZ_AUKY01000114 (original name was: NZ_AUKY01000114.1); NZ_AUKY01000115 (original name was: NZ_AUKY01000115.1); NZ_AUKY01000116 (original name was: NZ_AUKY01000116.1); NZ_AUKY01000117 (original name was: NZ_AUKY01000117.1); NZ_AUKY01000118 (original name was: NZ_AUKY01000118.1); NZ_AUKY01000119 (original name was: NZ_AUKY01000119.1); NZ_AUKY01000120 (original name was: NZ_AUKY01000120.1); NZ_AUKY01000121 (original name was: NZ_AUKY01000121.1); NZ_AUKY01000122 (original name was: NZ_AUKY01000122.1); NZ_AUKY01000123 (original name was: NZ_AUKY01000123.1); NZ_AUKY01000124 (original name was: NZ_AUKY01000124.1); NZ_AUKY01000125 (original name was: NZ_AUKY01000125.1); NZ_AUKY01000126 (original name was: NZ_AUKY01000126.1); NZ_AUKY01000127 (original name was: NZ_AUKY01000127.1); NZ_AUKY01000128 (original name was: NZ_AUKY01000128.1); NZ_AUKY01000129 (original name was: NZ_AUKY01000129.1); NZ_AUKY01000130 (original name was: NZ_AUKY01000130.1); NZ_AUKY01000131 (original name was: NZ_AUKY01000131.1); NZ_AUKY01000132 (original name was: NZ_AUKY01000132.1); NZ_AUKY01000133 (original name was: NZ_AUKY01000133.1); NZ_AUKY01000134 (original name was: NZ_AUKY01000134.1); NZ_AUKY01000135 (original name was: NZ_AUKY01000135.1); NZ_AUKY01000136 (original name was: NZ_AUKY01000136.1); NZ_AUKY01000137 (original name was: NZ_AUKY01000137.1); NZ_AUKY01000138 (original name was: NZ_AUKY01000138.1); NZ_AUKY01000139 (original name was: NZ_AUKY01000139.1); NZ_AUKY01000140 (original name was: NZ_AUKY01000140.1); NZ_AUKY01000141 (original name was: NZ_AUKY01000141.1); NZ_AUKY01000142 (original name was: NZ_AUKY01000142.1); NZ_AUKY01000143 (original name was: NZ_AUKY01000143.1); NZ_AUKY01000144 (original name was: NZ_AUKY01000144.1); NZ_AUKY01000145 (original name was: NZ_AUKY01000145.1); NZ_AUKY01000146 (original name was: NZ_AUKY01000146.1); NZ_AUKY01000147 (original name was: NZ_AUKY01000147.1); NZ_AUKY01000148 (original name was: NZ_AUKY01000148.1); NZ_AUKY01000149 (original name was: NZ_AUKY01000149.1); NZ_AUKY01000150 (original name was: NZ_AUKY01000150.1); NZ_AUKY01000151 (original name was: NZ_AUKY01000151.1); NZ_AUKY01000152 (original name was: NZ_AUKY01000152.1); NZ_AUKY01000153 (original name was: NZ_AUKY01000153.1); NZ_AUKY01000154 (original name was: NZ_AUKY01000154.1); NZ_AUKY01000155 (original name was: NZ_AUKY01000155.1); NZ_AUKY01000156 (original name was: NZ_AUKY01000156.1); NZ_AUKY01000157 (original name was: NZ_AUKY01000157.1); NZ_AUKY01000158 (original name was: NZ_AUKY01000158.1); NZ_AUKY01000159 (original name was: NZ_AUKY01000159.1); NZ_AUKY01000160 (original name was: NZ_AUKY01000160.1); NZ_AUKY01000161 (original name was: NZ_AUKY01000161.1); NZ_AUKY01000162 (original name was: NZ_AUKY01000162.1); NZ_AUKY01000163 (original name was: NZ_AUKY01000163.1); NZ_AUKY01000164 (original name was: NZ_AUKY01000164.1); NZ_AUKY01000165 (original name was: NZ_AUKY01000165.1); NZ_AUKY01000166 (original name was: NZ_AUKY01000166.1); NZ_AUKY01000167 (original name was: NZ_AUKY01000167.1); NZ_AUKY01000168 (original name was: NZ_AUKY01000168.1); NZ_AUKY01000169 (original name was: NZ_AUKY01000169.1); NZ_AUKY01000170 (original name was: NZ_AUKY01000170.1)

Compact view

c00004_NZ_AUKY.. - Region 1 - Pyruvate2acetate-formate

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Location: 28,371 - 51,444 nt. (total: 23,074 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00031_NZ_AUKY.. - Region 1 - Others_HGD_unassigned

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Location: 709 - 23,329 nt. (total: 22,621 nt) Show pHMM detection rules used

Region on contig edge.

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

NZ_KE384293.1 - Region 1 - Rnf_complex

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Location: 371 - 21,940 nt. (total: 21,570 nt) Show pHMM detection rules used

Region on contig edge.

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00039_NZ_AUKY.. - Region 1 - Arginine2_Hcarbonate

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Location: 1 - 19,743 nt. (total: 19,743 nt) Show pHMM detection rules used

Region on contig edge.

Arginine2_Hcarbonate: (Amidinotransf and OTCace and OTCace_N and AA_kinase)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters